G193367


Basic Information

Item Value
gene id G193367
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 27723860 ~ 27724105 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU262406
AATCGACTCTTTTTGTAGGAGTCGGCACACAGAGCTAGCCTAACTGAACCGGTCTGTGGAAAGATGGCGGCGTGTGTGATACGCAGGGGGCTGCTGTCCGCCGTTAATAAGTACAGTAAACCCAGCTCGCTGCGGGCGCTGAGCGCGGAGCTGAGCCGCGGGGCGGAGGCGGGCCGGCGGCGGGGTGTGCCGTGCTGTGTGTGCGGGGGAGCGGGTCTCCAGCAGCAGCGCTTCATGTCCTCCCGG

Function

GO:

id name namespace
GO:0006310 DNA recombination biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU262406 True 246 lncRNA 0.65 1 27723860 27724105

Neighbor

gene id symbol gene type direction distance location
bcl2l15 NA coding downstream 270484 27445479 ~ 27453376 (-)
LOC103029919 NA coding downstream 419920 27301296 ~ 27303940 (-)
LOC103046766 LOC108436454 coding downstream 424289 27296666 ~ 27299571 (-)
LOC107197599 NA coding downstream 431051 27287220 ~ 27292809 (-)
LOC103031188 chia,LOC108435172,LOC108255197,LOC108255198 coding downstream 433541 27274657 ~ 27290319 (-)
kif21b kif21b coding upstream 33122 27757227 ~ 27874978 (-)
LOC103045240 LOC108436365,LOC107592563,LOC107699336,LOC107680449,LOC107751004,LOC108254807 coding upstream 187570 27911675 ~ 27955052 (-)
LOC103028137 LOC103028137,LOC108436315,LOC104939458,LOC108254806,LOC103386138 coding upstream 238262 27962367 ~ 28008609 (-)
b3galt6 b3galt6,LOC107592565,LOC107680432,LOC107699339,LOC107555998 coding upstream 300232 28024337 ~ 28028670 (-)
LOC103026702 hipk1,si:ch211-160o17.4,LOC108254861,LOC107680439 coding upstream 306581 28030686 ~ 28048695 (-)
G193223 NA non-coding downstream 217331 27488865 ~ 27506529 (-)
G193226 NA non-coding downstream 228937 27493050 ~ 27494923 (-)
G193200 NA non-coding downstream 322218 27400837 ~ 27401642 (-)
G193198 NA non-coding downstream 333712 27389723 ~ 27390148 (-)
LOC111195418 NA non-coding downstream 336956 27384262 ~ 27386904 (-)
G193369 NA non-coding upstream 6898 27731003 ~ 27731662 (-)
G193370 NA non-coding upstream 11797 27735902 ~ 27736111 (-)
G193386 NA non-coding upstream 343369 28067474 ~ 28067681 (-)
G193411 NA non-coding upstream 441736 28165841 ~ 28166081 (-)
G193424 NA non-coding upstream 511060 28235165 ~ 28236469 (-)
LOC103046149 LOC102777140,LOC108436414,LOC102208887,LOC105027122,LOC108280970,LOC103144351,LOC107751002 other downstream 22529 27425042 ~ 27701331 (-)
LOC111195340 NA other downstream 332289 27390794 ~ 27391571 (-)
G193097 NA other downstream 690771 27031663 ~ 27033089 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other downstream 999754 26711253 ~ 26724106 (-)
LOC111195415 tfeb other downstream 1845207 25874910 ~ 25878653 (-)
tmem167b tmem167b other upstream 286886 28010991 ~ 28015612 (-)
LOC111195422 si:dkey-33m11.6,LOC108411515,LOC108255079,LOC107572850,LOC107714486,LOC107680422 other upstream 470274 28194379 ~ 28213070 (-)
LOC111195343 LOC108434908 other upstream 852002 28576107 ~ 28586222 (-)
G193541 NA other upstream 873450 28597555 ~ 28598638 (-)
G193737 NA other upstream 2441656 30165761 ~ 30180126 (-)

Expression


Co-expression Network