G193426


Basic Information

Item Value
gene id G193426
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 28243808 ~ 28244702 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU262486
atatatatatatatatatatatatatatatatatatatatatatgcctataaggaaacttcgaacccagaacactctaaaaaaaccttggagtaatctttttttttcaaacaaccttaaatttcaaaatgacatttactgactatttcttcactcagcctcgcccgagagccctaaatgcgagtttagggtaaaattctgtttacattcctccaagtcataaacctcggagttaatgtaaacatttggaacatttgcaACACATTTGCAACATTTGCATCACTAGGACGGGACTGCGGACTTAAGAGAGtgtcaaaacttaattaatgccttggaaattgttaattcaccaaatgttgtaccaatttaggggtttgtgcctagttatttctgcaatcacttagaaataagattaatgaaattaagagaaatgttctaagcttGGAAATTCCATTGACCGTTTGTAAGTGAGACTCTCTGCTCTCTGTTCACCAACCTCCCCCACCGTCGTAAATTCCGATGCCAGCCGCTTATCTAAGCATTCAGCAAAGGGGAGGAATTTCTCACTcagaagattttgcttaaaatacatatatattgactatataaaaaaggtgttttatagaatgtttactaaataatggtatatgtgtctggtatatggtatatgtgtttggatgtgtcctgattgaattctcctacacattcaagtctgaatcaacaaggtttaattagcatttgataatttagctttatttggttatcagtggtttaaccatgtattatcttttaagtgatttaattgggtttaaataataacatgactcttgatctctttctgacagagtaccatccatcgttgtatttctaagattatcttgaatattacatgtttg

Function

NR:

description
uncharacterized protein LOC101886882

GO:

id name namespace
GO:0048736 appendage development biological_process
GO:0033333 fin development biological_process
GO:0019825 oxygen binding molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU262486 True 895 lncRNA 0.33 1 28243808 28244702

Neighbor

gene id symbol gene type direction distance location
LOC103026411 LOC107680412,LOC107751023,LOC107555990,LOC107714481,LOC107699319 coding downstream 19144 28217461 ~ 28224664 (-)
LOC111195421 ddx19,LOC108411521,LOC108255077,LOC107680447,LOC107699345,LOC107572851,LOC107556002,LOC105931731 coding downstream 42586 28190720 ~ 28201222 (-)
LOC103044609 acap3b,LOC108254862,LOC107680440,LOC107714502 coding downstream 81446 28065882 ~ 28162362 (-)
LOC103026702 hipk1,si:ch211-160o17.4,LOC108254861,LOC107680439 coding downstream 195113 28030686 ~ 28048695 (-)
b3galt6 b3galt6,LOC107592565,LOC107680432,LOC107699339,LOC107555998 coding downstream 215138 28024337 ~ 28028670 (-)
LOC103044024 LOC108436218 coding upstream 9082 28253784 ~ 28267940 (-)
LOC103025279 tmcc1b,LOC108436190,LOC107746889,LOC107755185,LOC107696833,LOC107656050 coding upstream 25255 28269957 ~ 28294968 (-)
LOC111195423 NA coding upstream 51603 28296305 ~ 28301008 (-)
LOC111195424 NA coding upstream 57866 28302568 ~ 28308048 (-)
LOC103024327 NA coding upstream 78653 28323355 ~ 28329288 (-)
G193424 NA non-coding downstream 7339 28235165 ~ 28236469 (-)
G193411 NA non-coding downstream 77727 28165841 ~ 28166081 (-)
G193386 NA non-coding downstream 176127 28067474 ~ 28067681 (-)
G193370 NA non-coding downstream 507697 27735902 ~ 27736111 (-)
G193369 NA non-coding downstream 512146 27731003 ~ 27731662 (-)
G193435 qrich1,LOC107729405,LOC107558890 non-coding upstream 72642 28317344 ~ 28318704 (-)
G193477 NA non-coding upstream 150995 28395697 ~ 28469608 (-)
G193540 NA non-coding upstream 350949 28595651 ~ 28596007 (-)
G193568 NA non-coding upstream 631215 28875917 ~ 28930921 (-)
G193637 NA non-coding upstream 931212 29175914 ~ 29176124 (-)
LOC111195422 si:dkey-33m11.6,LOC108411515,LOC108255079,LOC107572850,LOC107714486,LOC107680422 other downstream 30738 28194379 ~ 28213070 (-)
tmem167b tmem167b other downstream 228196 28010991 ~ 28015612 (-)
LOC103046149 LOC102777140,LOC108436414,LOC102208887,LOC105027122,LOC108280970,LOC103144351,LOC107751002 other downstream 542477 27425042 ~ 27701331 (-)
LOC111195340 NA other downstream 852237 27390794 ~ 27391571 (-)
G193097 NA other downstream 1210719 27031663 ~ 27033089 (-)
LOC111195343 LOC108434908 other upstream 331405 28576107 ~ 28586222 (-)
G193541 NA other upstream 352853 28597555 ~ 28598638 (-)
G193737 NA other upstream 1921059 30165761 ~ 30180126 (-)
spcs1 spcs1,LOC107680421,LOC107744856 other upstream 2565092 30809794 ~ 30830957 (-)
LOC103037496 mustn1,LOC103037496,LOC103359875,LOC107091502 other upstream 2925596 31170298 ~ 31194049 (-)

Expression


Co-expression Network