LOC111195343 (LOC108434908)


Basic Information

Item Value
gene id LOC111195343
gene name LOC108434908
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 28576107 ~ 28586222 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU262651
AGATTAGGTGTTCActtcaacatttaaaacaagattagtatattatttttgttttgtgtagtTTAAGAATGAAAATGAGAAAGGAGCATCATGCAAAAGTGTAGACACAGGGTTTAAATTCTgatatttgatgttttttgcagCTTTTCCGTGAAGATGTGGAGGTGAAGAAAAGACTGGTGAAGTCTTATAAGCTCATGCTGGATTTTTATGGGATTAGACTGCTTGATGAGAAAACAGGCAAAGTATGTCGTATAAAACTAAAGTGGAAAGAGCGATTTGACAACTTAAACAGaaacacacacaacaacctGCGCATCACACGCATTCTGAAATGTCTGGGAATTCTGGGATTTCAGCACTACCAGGCTCCACTGGTCAAGTTCTTCCTCCATCAGACTCTGGTGAAGGAAAAGGCTTCCCAGAGTGAAGCAGAGCGCTCTAGACTACTTCCTGTTCTCTGTGGTGGATAAAAAAGA
>TU262654
AGATTAGGTGTTCActtcaacatttaaaacaagattagtatattatttttgttttgtgtagtTTAAGAATGAAAATGAGAAAGGAGCATCATGCAAAAGTGTAGACACAGGGTTTAAATTCTgatatttgatgttttttgcagCTTTTCCGTGAAGATGTGGAGGTGAAGAAAAGACTGGTGAAAAGCTCATGCTGGATTTCTATGGCATTCAACTGCTTGATGAGAAAACAGGCAAAGTATGTCGTATAAAATTAAAGTGGAAAGAGCGATTTGAGAACTTAAACAGaaacacacacaacaacctGCGCATCACACGCATTCTGAAATGTCTGGGAATTCTGGGATTTCAGCACTACCAGGCTCCACTGGTCAAGTTCTTCCTCCATCAGACTCTGGTGAAGGAAAAGGCTTCCCAGAGTGAAGCAGAGCGCTCTAGACTACTTCCTGTTCTCTGTGGTGGATAAAAAAGA
>XM_022682150.1
ATGTTCAGGTTTAGACAAATCAGTAATAAATCTTCTGAGGATGGTCTCGGCAACAAAACGAGAAAAGAAAGGGATGACTTAGAAACAGATTATGATTCTACGTGGGAGGACAATGATCACATTACAGAAAGTGAAGAGAACTTCTTCCAGTGGGGATTCTGGGCAGAGAGAAACAAATATGCTGCAAAAGACATGCAGGATTTTAGGCACATTCTGAGGTTGGGCTTTCAGGATTTTGCCAACCTGCTGTTTTACCAGAATAAGTGGCCGTCTGAGCCTGATGGGGCGTTCATTGAGAAATTTCATGATGAGTGGTTTGGTGATTACAAAAGACTGGAATATGCAGACTCCTACATTAAGTGGTTGTTTCCTAATCAACAGAAAGGATTAAACTGGGATTCACGTGTACTTACCGAAAAAGAAATCAAGCTTTTCCGTGAAGATGTGGAGGTGAAGAAAAGACTGGTGAAGTCTTATAAGCTCATGCTGGATTTTTATGGGATTAGACTGCTTGATGAGAAAACAGGCAAAGTATGTCGTATAAAACTAAAGTGGAAAGAGCGATTTGACAACTTAAACAGaaacacacacaacagcCTGCGCATCACACGCATTCTGAAGTGTCTGGGAATTCTGGGATTTCAGCACTACCAGGCTCCACTGGTCAAGTTCTTCCTCCATCAGACTCTGGTGAAGGAAAGGCTTCCCAGTGTGAAGCAGAGCGCTCTAGACTACTACCTGTTCTCTGTGGTGGATAAAAAAGAGCGGAGGAAACTGATCAAGTATGCTTTCCAGAAATTCCAGCCAAGAGAGGATTTTGTGTGGTGTCCAAAGAGGATCCAAAGGAGATTTCTGAAAGAGATCAATCAACAGATAACAGAGGACGACGACTCTGATCTCTCAGAGCCAGAATCTGATGCTGAAGCTGAAGAAAATTTCCCTGAGAATATCCCTGAGTACGAAttataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU262651 False 479 TUCP 0.39 2 28576107 28583747
TU262654 False 472 TUCP 0.39 3 28576107 28583747
XM_022682150.1 True 969 mRNA 0.42 7 28582978 28586222

Neighbor

gene id symbol gene type direction distance location
LOC103046446 LOC108436063,LOC107728611,LOC107656039,LOC107600301 coding downstream 5165 28546579 ~ 28570942 (-)
LOC103043100 ncoa3,LOC108436109,LOC108255004,LOC107717960 coding downstream 68551 28459080 ~ 28507556 (-)
LOC103024327 NA coding downstream 246819 28323355 ~ 28329288 (-)
LOC111195424 NA coding downstream 268059 28302568 ~ 28308048 (-)
LOC111195423 NA coding downstream 275099 28296305 ~ 28301008 (-)
LOC103042433 taf4,LOC108436032 coding upstream 565499 29151721 ~ 29173495 (-)
LOC103040895 LOC108436021 coding upstream 591124 29177346 ~ 29219008 (-)
LOC103042113 LOC103042113,LOC108435091 coding upstream 647290 29233512 ~ 29254829 (-)
LOC103040276 NA coding upstream 683699 29269921 ~ 29278564 (-)
cse1l cse1l,LOC107750990,LOC107699361 coding upstream 693928 29280150 ~ 29291603 (-)
G193477 NA non-coding downstream 106499 28395697 ~ 28469608 (-)
G193435 qrich1,LOC107729405,LOC107558890 non-coding downstream 257403 28317344 ~ 28318704 (-)
G193426 NA non-coding downstream 331405 28243808 ~ 28244702 (-)
G193424 NA non-coding downstream 339638 28235165 ~ 28236469 (-)
G193411 NA non-coding downstream 410026 28165841 ~ 28166081 (-)
G193540 NA non-coding upstream 9429 28595651 ~ 28596007 (-)
G193568 NA non-coding upstream 289695 28875917 ~ 28930921 (-)
G193637 NA non-coding upstream 589692 29175914 ~ 29176124 (-)
G193638 NA non-coding upstream 590233 29176455 ~ 29176865 (-)
LOC111195426 NA non-coding upstream 641482 29227704 ~ 29232967 (-)
LOC111195422 si:dkey-33m11.6,LOC108411515,LOC108255079,LOC107572850,LOC107714486,LOC107680422 other downstream 363037 28194379 ~ 28213070 (-)
tmem167b tmem167b other downstream 560495 28010991 ~ 28015612 (-)
LOC103046149 LOC102777140,LOC108436414,LOC102208887,LOC105027122,LOC108280970,LOC103144351,LOC107751002 other downstream 874776 27425042 ~ 27701331 (-)
LOC111195340 NA other downstream 1184536 27390794 ~ 27391571 (-)
G193097 NA other downstream 1543018 27031663 ~ 27033089 (-)
G193541 NA other upstream 11333 28597555 ~ 28598638 (-)
G193737 NA other upstream 1579539 30165761 ~ 30180126 (-)
spcs1 spcs1,LOC107680421,LOC107744856 other upstream 2223572 30809794 ~ 30830957 (-)
LOC103037496 mustn1,LOC103037496,LOC103359875,LOC107091502 other upstream 2584076 31170298 ~ 31194049 (-)
trnae-cuc_20 NA other upstream 2588585 31174807 ~ 31174878 (-)

Expression


Co-expression Network