G193540


Basic Information

Item Value
gene id G193540
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 28595651 ~ 28596007 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU262660
ACCTATGGTGGTAATGACGGTGAGGGAGAAATAGAAGGAGCCGGGGAAGCTCCACTGCCGCCCGGCTCGGTGAGGGCTGGACCGGAGCAGCACGCGCTCCAGCGCGCGGTAATCCTCCTCCGTAAATCCGTACTTCTGCCTCATCTCAGCGCATCTCCGCTCCACCCTGCGCCCCCCCGTAGCGCTCGCTCTCCGCCTCGAGCGCCTCGAACACGGCGGCTCCCGCCAGCAGGTAGGCGAGCACGCAGAGCACGAGCACGAGCGCGCGGACACTCGGCGCCTTCATCCGAGGAGTGAACACCTGAAGTTCCTGAAGTTCCAGCGAACTGAACCGCAGCGCTGCCTGAGAGATCTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU262660 True 357 lncRNA 0.65 1 28595651 28596007

Neighbor

gene id symbol gene type direction distance location
LOC103046446 LOC108436063,LOC107728611,LOC107656039,LOC107600301 coding downstream 24709 28546579 ~ 28570942 (-)
LOC103043100 ncoa3,LOC108436109,LOC108255004,LOC107717960 coding downstream 88095 28459080 ~ 28507556 (-)
LOC103024327 NA coding downstream 266363 28323355 ~ 28329288 (-)
LOC111195424 NA coding downstream 287603 28302568 ~ 28308048 (-)
LOC111195423 NA coding downstream 294643 28296305 ~ 28301008 (-)
LOC103042433 taf4,LOC108436032 coding upstream 555714 29151721 ~ 29173495 (-)
LOC103040895 LOC108436021 coding upstream 581339 29177346 ~ 29219008 (-)
LOC103042113 LOC103042113,LOC108435091 coding upstream 637505 29233512 ~ 29254829 (-)
LOC103040276 NA coding upstream 673914 29269921 ~ 29278564 (-)
cse1l cse1l,LOC107750990,LOC107699361 coding upstream 684143 29280150 ~ 29291603 (-)
G193477 NA non-coding downstream 126043 28395697 ~ 28469608 (-)
G193435 qrich1,LOC107729405,LOC107558890 non-coding downstream 276947 28317344 ~ 28318704 (-)
G193426 NA non-coding downstream 350949 28243808 ~ 28244702 (-)
G193424 NA non-coding downstream 359182 28235165 ~ 28236469 (-)
G193411 NA non-coding downstream 429570 28165841 ~ 28166081 (-)
G193568 NA non-coding upstream 279910 28875917 ~ 28930921 (-)
G193637 NA non-coding upstream 579907 29175914 ~ 29176124 (-)
G193638 NA non-coding upstream 580448 29176455 ~ 29176865 (-)
LOC111195426 NA non-coding upstream 631697 29227704 ~ 29232967 (-)
G193642 NA non-coding upstream 667967 29263974 ~ 29266389 (-)
LOC111195343 LOC108434908 other downstream 9429 28576107 ~ 28586222 (-)
LOC111195422 si:dkey-33m11.6,LOC108411515,LOC108255079,LOC107572850,LOC107714486,LOC107680422 other downstream 382581 28194379 ~ 28213070 (-)
tmem167b tmem167b other downstream 580039 28010991 ~ 28015612 (-)
LOC103046149 LOC102777140,LOC108436414,LOC102208887,LOC105027122,LOC108280970,LOC103144351,LOC107751002 other downstream 894320 27425042 ~ 27701331 (-)
LOC111195340 NA other downstream 1204080 27390794 ~ 27391571 (-)
G193541 NA other upstream 1548 28597555 ~ 28598638 (-)
G193737 NA other upstream 1569754 30165761 ~ 30180126 (-)
spcs1 spcs1,LOC107680421,LOC107744856 other upstream 2213787 30809794 ~ 30830957 (-)
LOC103037496 mustn1,LOC103037496,LOC103359875,LOC107091502 other upstream 2574291 31170298 ~ 31194049 (-)
trnae-cuc_20 NA other upstream 2578800 31174807 ~ 31174878 (-)

Expression


Co-expression Network