G193638


Basic Information

Item Value
gene id G193638
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 29176455 ~ 29176865 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU262779
aaactgagcctgggtcagtgtctgatcaacaactgttgtaaacgtccgttttactgccaagttggtatataaccagatagaggggatttatttctgagtctggttttaacacatgaaaaacaggcacgtcagaatttgaaaattaacgcatgtaaatgaatggcgtctttcacatccagtccggcgagcacctttacacggacacgtgaatccgtcgtagcacgcacttcacgcctgtacctgcgtgcccaaatttcggataactcagcgcttttgcgggcgcttaccgcatgggttgtgcacgactacaaagagattttatttatgttcagattaaaattataaactaaacacatactttgcgctgcacggcggggtggtgttcttggagatgggagaacaggtttgacg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU262779 True 411 lncRNA 0.45 1 29176455 29176865

Neighbor

gene id symbol gene type direction distance location
LOC103042433 taf4,LOC108436032 coding downstream 2960 29151721 ~ 29173495 (-)
LOC103046446 LOC108436063,LOC107728611,LOC107656039,LOC107600301 coding downstream 605513 28546579 ~ 28570942 (-)
LOC103043100 ncoa3,LOC108436109,LOC108255004,LOC107717960 coding downstream 668899 28459080 ~ 28507556 (-)
LOC103024327 NA coding downstream 847167 28323355 ~ 28329288 (-)
LOC111195424 NA coding downstream 868407 28302568 ~ 28308048 (-)
LOC103040895 LOC108436021 coding upstream 481 29177346 ~ 29219008 (-)
LOC103042113 LOC103042113,LOC108435091 coding upstream 56647 29233512 ~ 29254829 (-)
LOC103040276 NA coding upstream 93056 29269921 ~ 29278564 (-)
cse1l cse1l,LOC107750990,LOC107699361 coding upstream 103285 29280150 ~ 29291603 (-)
ptprg ptprg,ptprga,LOC107752167,LOC106583020 coding upstream 125669 29302534 ~ 29759625 (-)
G193637 NA non-coding downstream 331 29175914 ~ 29176124 (-)
G193568 NA non-coding downstream 245534 28875917 ~ 28930921 (-)
G193540 NA non-coding downstream 580448 28595651 ~ 28596007 (-)
G193477 NA non-coding downstream 706847 28395697 ~ 28469608 (-)
G193435 qrich1,LOC107729405,LOC107558890 non-coding downstream 857751 28317344 ~ 28318704 (-)
LOC111195426 NA non-coding upstream 50839 29227704 ~ 29232967 (-)
G193642 NA non-coding upstream 87109 29263974 ~ 29266389 (-)
G193649 NA non-coding upstream 119936 29296801 ~ 29297084 (-)
G193652 NA non-coding upstream 202882 29379747 ~ 29380489 (-)
G193662 NA non-coding upstream 407587 29584452 ~ 29584846 (-)
G193541 NA other downstream 577817 28597555 ~ 28598638 (-)
LOC111195343 LOC108434908 other downstream 590233 28576107 ~ 28586222 (-)
LOC111195422 si:dkey-33m11.6,LOC108411515,LOC108255079,LOC107572850,LOC107714486,LOC107680422 other downstream 963385 28194379 ~ 28213070 (-)
tmem167b tmem167b other downstream 1160843 28010991 ~ 28015612 (-)
LOC103046149 LOC102777140,LOC108436414,LOC102208887,LOC105027122,LOC108280970,LOC103144351,LOC107751002 other downstream 1475124 27425042 ~ 27701331 (-)
G193737 NA other upstream 988896 30165761 ~ 30180126 (-)
spcs1 spcs1,LOC107680421,LOC107744856 other upstream 1632929 30809794 ~ 30830957 (-)
LOC103037496 mustn1,LOC103037496,LOC103359875,LOC107091502 other upstream 1993433 31170298 ~ 31194049 (-)
trnae-cuc_20 NA other upstream 1997942 31174807 ~ 31174878 (-)
cadps cadps,LOC107549847 other upstream 2273938 31450803 ~ 31654210 (-)

Expression


Co-expression Network