G193652


Basic Information

Item Value
gene id G193652
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 29379747 ~ 29380489 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU262798
TCACATCATCCACAGCTGTACCCCGTTAGCATTCTCTGCACATCCTGTTTCCATAGGAGGAACTCACGCTGTGTACATCTGTATGCAAATGAGTTGAGGCGCACACTCCGCCAAAACCGTAACGTTTTTAACAAATATGCTGTAGCATatttgaataaatcatttatttgcaggtactttaaaaaaaaagtctattttcacgccttgtgtccgcgctgttaagatatgaacacgccaaagtcagagcacccCTGGTTCTTAAAACGATTGACCAACAAGTGGCGCAtcgattggtttatttcacattataaaTAAACCAACTTAGTATGCCCGAAACAGCTACCAAAGAGACCATACCAATAACCTGGACACTATGTAGACCATATAggctgcctagcaacacctttgcaactaATAAGCAATAAGCAACATAGCAACTTTACTATAGCACACGACAATAGAACTATAGAACCCAACTGTGACATTTTAGCAACCATATCAACTGCATAGCAATCACCAAAACAAACACCCTAGTATCCACCTTTTACATCTTAGCCACCACCTAGCataccaaagcaaccacctagcaaccacctagcagccatTGCTTTGAAAACTGACACAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU262798 True 626 lncRNA 0.41 2 29379747 29380489

Neighbor

gene id symbol gene type direction distance location
cse1l cse1l,LOC107750990,LOC107699361 coding downstream 88144 29280150 ~ 29291603 (-)
LOC103040276 NA coding downstream 101183 29269921 ~ 29278564 (-)
LOC103042113 LOC103042113,LOC108435091 coding downstream 124918 29233512 ~ 29254829 (-)
LOC103040895 LOC108436021 coding downstream 160739 29177346 ~ 29219008 (-)
LOC103042433 taf4,LOC108436032 coding downstream 206252 29151721 ~ 29173495 (-)
LOC103043315 NA coding upstream 1338487 30718976 ~ 30720245 (-)
LOC103040946 LOC108435972,LOC107714490,LOC107566450,LOC108254900 coding upstream 1348746 30729235 ~ 30802508 (-)
gnl3 NA coding upstream 1466808 30847297 ~ 30856549 (-)
sfmbt1 sfmbt1 coding upstream 1815333 31195822 ~ 31230829 (-)
LOC103036366 prkcd,prkcdb,LOC108435819,LOC107696837,LOC107728641,LOC107656045,LOC107600299 coding upstream 1857982 31238471 ~ 31287104 (-)
G193649 NA non-coding downstream 82663 29296801 ~ 29297084 (-)
G193642 NA non-coding downstream 113358 29263974 ~ 29266389 (-)
LOC111195426 NA non-coding downstream 146780 29227704 ~ 29232967 (-)
G193638 NA non-coding downstream 202882 29176455 ~ 29176865 (-)
G193637 NA non-coding downstream 203623 29175914 ~ 29176124 (-)
G193662 NA non-coding upstream 203963 29584452 ~ 29584846 (-)
G193678 NA non-coding upstream 352083 29732572 ~ 29733272 (-)
G193723 NA non-coding upstream 423993 29804482 ~ 29805915 (-)
G193736 NA non-coding upstream 775649 30156138 ~ 30208978 (-)
G193764 NA non-coding upstream 1056396 30436885 ~ 30505037 (-)
G193541 NA other downstream 781109 28597555 ~ 28598638 (-)
LOC111195343 LOC108434908 other downstream 793525 28576107 ~ 28586222 (-)
LOC111195422 si:dkey-33m11.6,LOC108411515,LOC108255079,LOC107572850,LOC107714486,LOC107680422 other downstream 1166677 28194379 ~ 28213070 (-)
tmem167b tmem167b other downstream 1364135 28010991 ~ 28015612 (-)
LOC103046149 LOC102777140,LOC108436414,LOC102208887,LOC105027122,LOC108280970,LOC103144351,LOC107751002 other downstream 1678416 27425042 ~ 27701331 (-)
G193737 NA other upstream 785272 30165761 ~ 30180126 (-)
spcs1 spcs1,LOC107680421,LOC107744856 other upstream 1429305 30809794 ~ 30830957 (-)
LOC103037496 mustn1,LOC103037496,LOC103359875,LOC107091502 other upstream 1789809 31170298 ~ 31194049 (-)
trnae-cuc_20 NA other upstream 1794318 31174807 ~ 31174878 (-)
cadps cadps,LOC107549847 other upstream 2070314 31450803 ~ 31654210 (-)

Expression


Co-expression Network