G193818


Basic Information

Item Value
gene id G193818
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 30724432 ~ 30728862 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU263014
ttttttttttttttaaatacgtcATCAGACATTCATCATCTGCAGTGCCTTCACGGTTGCAGTATCCTGTTCTTTTTTCCAGTATGATTATTAGTGTTCTTGTTTCTTTTGTAAACGTCAAAAATGTCTGTCTCTTCGGTTCATACTAATTTGAAAGCTGTAAATGTCGAAGTGTAGGTTTTTTATCTTGTGTTCACCTACAGGGCGTATCTTTCCATGTCAGCTATGCGCTGTTagtggaacttttttttttttttttctaatacaaAAACGTCTAACGTCTACTGCCATCCATCATTCTACCATGTTTGTAAATGCTATGGTATTTTATTATTCCTGTTTTCTGAGGCCCTTTCTTTCCATAaagaaaccacaaaaaaaatgatgcttTAACTCAGGGGAGGACGACTGATTAAGGTCAGAGTTTGGGGATTTTAAATGATAGTTGTGTTGCAGAGCATACGATATaagatttaaatatatatacacagatatatatagatatatatatagatatagatatatatagatatatatatgaTAGGGATattgaactatatatatatatatggagctATATCACCAGAGGGAGGGAAGTTTCCCGGTCATTTTAGGTTCTGCTGTAACATTCATATTGCTTTGCACCATTAAACCTGTACAGAAGTGaattaattaaagaattttGTTgacaaaaaaaaaaaaaaaaaaacaacaaagcgATATATAGATCTGTGTGGTATGATATTCTGATTTTGTTGATTGAGGagtgattttgtttatttgtttatgttttgctTGCCCTGTTGTCTATTTGCTTGAATTTTCACGATGACCTGtgggtttgattttttttgtgagaaattaaaaaaagaagcttCTTTTTGCTTTAATCTACAGTTAATCACCAGTGTATCCTGCAGCATTGTTTATTGCAAAATATCCCATTTATTGATCAAACTTCCACTGCGGCTTTTACAGGTCAAAAGGGGAATGACGTCTTTATTGACTGACTGCTTTTATGGTGAATGTGGTGTTttttccaaaataataattgtcaGCTGTTTTGTGAGGCGTAGGTGGTGAGCTATACACTGTTTGTCTGAAAGTGGTTCTGCACAGAAAACTCAACTGAAAAGAAATATAGGTATTTCTGTAATAAGTACAGTCATTGTCGGCTcagtagaataaaataaaaaaaatctaataataatgaatatatcTAAAATTCATCAGAAGATTCTATCATTTAAAGATTTTCAGTTagtccaattaaaaatattttctatgaatttcaaataattttatCTGAAATCTTTGAAATTGAACTGAAATTTCTGACATTCAAATTAATTCAatgcttgtttgtttttcaatttaaatgaaatttatctgaactttaaatatgttttctaaAATTCCTCTTatgtatttctaatattttttttctgaaatgcagTAGAAATTCCATATATTTctcttaaatttaaataataaaaaactcatGTAGATTTTCTTCTAAAACTTctcataaatatgttttaaatatagcGCTGAAATTCCAAAGATATCttgtaaatacaaaatattggaCTAGATTTTCTTCTAAATCTTTTCagaaatatttctaaaatatagtGCTGAAATTCCAGATAtattgcataaataaaaaaaaaacactcaagtAGATTTCCTTCTAAAACTTCtcaaatatttctaaaatatagtACTGAAATTCCAGATATTTCTCTTCAGTTTACATGCAATTTCTCTGACATGCTAATAAGATTCTTGACATTGCACAAAAaattcaattttttaaaaattccaATAACATGTCTGAATTctcttaaaatcattaataatctttaAAATTTCTCTAAAATAACTAAGACGTCATGTTTGAAATAAGGGATTGTATACATTGATGCTAATATCTATTATTCTGTATGCTTTTCCTGAGTTAATGCTATGatatgcttcttttttttatcaaaatagatgtacaaaaaaagttcaagattttcaatattttacttaaaaaaataaaaaacaaaaccaatgGACTGGTTAAATTGTAAATTTTGACAATCGATAAATTATAACTtctggtcattttttttttttttttttaattgtacaaggttttttattttactgcaccaTTAAGATCAGTCTTGATGGCTGCCTCTCAGTTGCCTAATGCATAGGATGCACAATGTCTGCTGGCCTgtttatacaatattttccaAGGTTTTTcaagtttaaaatgaaaaatatatagtaaaaacaTTTAGTAATTCACATAGGTACTCAGGACAGTAATGTGATTGATGCTGATGTTGTGTAAAAATCATAGAAAAAGGGCATGCCCTTCGTAACCCAAGAAAGTAGTATTCGCACACAAAGGATTAGTACAAAATTAGCATTATTGGCATTGATAAGCGGTTGCAATTTTATATGCAAGAAGAATTTGAAGGGCTTGATTTTATTAAAAGCAGCAGGGCTTTCCAACATGTATGCTGTAATTACAATTGTTAAACATAATTGACTAGTTAATTGATTTGCCCAattctgatctgaaattaaatttatttttttgtggtttgAAAATTCCTATTGTATTTCAATTCCTCCCTTTGTACTTTTGGACAGTTGAATTGTACTGATAGACTGAAATCTTACTGTGTAACACCTATTTACCCAGGCAGAGCTGAATGTTaaccttatttattattttatttctagtttatttttTGGAAACTTGTAAAAGCTGTTTTGAGCTATTCATTTGTATGGATGCAATGCATCAGGGGTAATGCCTGGATATTATTGTACGTAATGGAGTAACGCTCAGTATTCAAGCTAAcaatttgtacttttaaaaGATTTGTAAATGTAAAGCTTATTAAATCTTTCTTGTCTATGCATTGTGTGTCTGTGCCATGTGTACCGAGAGCGAGAGAACCggaggagaaaggctgtggagaagAGGATAACGGTAGGTTGAATAACTTGGTTTGTGGCTTTCTGTGCAAAAcaaatttctttttatatagaaaaaaaaacaaaaacatgtatt

Function

GO: NA

KEGG:

id description
ko04911 Insulin secretion

RNA

RNA id representative length rna type GC content exon number start site end site
TU263014 True 3079 lncRNA 0.30 2 30724432 30728862

Neighbor

gene id symbol gene type direction distance location
LOC103043315 NA coding downstream 4187 30718976 ~ 30720245 (-)
ptprg ptprg,ptprga,LOC107752167,LOC106583020 coding downstream 964807 29302534 ~ 29759625 (-)
cse1l cse1l,LOC107750990,LOC107699361 coding downstream 1432829 29280150 ~ 29291603 (-)
LOC103040276 NA coding downstream 1445868 29269921 ~ 29278564 (-)
LOC103042113 LOC103042113,LOC108435091 coding downstream 1469603 29233512 ~ 29254829 (-)
LOC103040946 LOC108435972,LOC107714490,LOC107566450,LOC108254900 coding upstream 373 30729235 ~ 30802508 (-)
gnl3 NA coding upstream 118435 30847297 ~ 30856549 (-)
sfmbt1 sfmbt1 coding upstream 466960 31195822 ~ 31230829 (-)
LOC103036366 prkcd,prkcdb,LOC108435819,LOC107696837,LOC107728641,LOC107656045,LOC107600299 coding upstream 509609 31238471 ~ 31287104 (-)
LOC103035852 LOC108435806 coding upstream 576705 31305567 ~ 31370546 (-)
G193770 NA non-coding downstream 123534 30537778 ~ 30600898 (-)
G193764 NA non-coding downstream 219395 30436885 ~ 30505037 (-)
G193736 NA non-coding downstream 515454 30156138 ~ 30208978 (-)
G193723 NA non-coding downstream 918517 29804482 ~ 29805915 (-)
G193678 NA non-coding downstream 991160 29732572 ~ 29733272 (-)
G193846 NA non-coding upstream 115193 30844055 ~ 30845956 (-)
G193866 NA non-coding upstream 164765 30893627 ~ 30911740 (-)
G193886 NA non-coding upstream 239457 30968319 ~ 30983362 (-)
G193889 NA non-coding upstream 282425 31011287 ~ 31011543 (-)
G193891 NA non-coding upstream 289885 31018747 ~ 31019226 (-)
G193737 NA other downstream 544306 30165761 ~ 30180126 (-)
G193541 NA other downstream 2125794 28597555 ~ 28598638 (-)
LOC111195343 LOC108434908 other downstream 2138210 28576107 ~ 28586222 (-)
LOC111195422 si:dkey-33m11.6,LOC108411515,LOC108255079,LOC107572850,LOC107714486,LOC107680422 other downstream 2511362 28194379 ~ 28213070 (-)
tmem167b tmem167b other downstream 2708820 28010991 ~ 28015612 (-)
spcs1 spcs1,LOC107680421,LOC107744856 other upstream 80932 30809794 ~ 30830957 (-)
LOC103037496 mustn1,LOC103037496,LOC103359875,LOC107091502 other upstream 441436 31170298 ~ 31194049 (-)
trnae-cuc_20 NA other upstream 445945 31174807 ~ 31174878 (-)
cadps cadps,LOC107549847 other upstream 721941 31450803 ~ 31654210 (-)

Expression


Co-expression Network