spcs1 (spcs1,LOC107680421,LOC107744856)


Basic Information

Item Value
gene id spcs1
gene name spcs1,LOC107680421,LOC107744856
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 30809794 ~ 30830957 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU263040
CCGAAATCTACGTGCACCTTTTTGAAACAGGAAATCACACATTCATATTAACTGCAGataagtttatgtttaaatCGGATTAATTCGGATATTTCAGCATGCTGTCTATGTTCAAATCGATTCCGACGCATATGGATTACAAAGGACAGAAACTTGCAGAGCAGATTTTCCAGGGCATCATCCTCGTCTCTGCGgtCATTGGATTCATTTATGGTCTTATAATTGAGCAGTTTGGATGGACTGTTTATATAATGTTAGCTGGATTCACTGTCTCTTGTTTGCTCACACTGCCTCCATGGCCCATGTACAGACAGAACCCCCTCACCTGGCAGCCTGCTTTACCCGAGGCCCCCGTAGAGAGCCGTGAAAAGCCTCAGGAGAatttaaagaagaagaaacacaAGTAGAACACCATCTGCTTATCACCTGAACCCCTCTGCCTATGGCCCCACCCGCCCCATGTTTCACAGACATTGTGGACTTGCCAAAATTGGATAAAACTGTACGGATTGCTCTCGTTTCATGTTAAATTACAAATCTGTTTAATAAAGAAGATTCATCATTCTTAaaaaaaaaaaaaaaaaaaaaaaaa
>TU263041
CCGAAATCTACGTGCACCTTTTTGAAACAGGAAATCACACATTCATATTAACTGCAGataagtttatgtttaaatCGGATTAATTCGGATATTTCAGCATGCTGTCTATGTTCAAATCGATTCCGACGCATATGGATTACAAAGGACAGAAACTTGCAGAGCAGATTTTCCAGGGCATCATCCTCGTCTCTGCGgtCATTGGATTCATTTATGGTCTTATAATTGAGCAGTTTGGATGGACTGTTTATATAATGTTAGCTGGATTCACTGTCTCTTGTTTGCTCACACTGCCTCCATGGCCCATGTACAGACAGAACCCCCTCACCTGGCAGCCTGCTTTACCCGAGGCCCCCGTAGAGAGCCGTGAAAAGCCTCAGGAGAatttaaagaagaagaaacacaAGTAGAACACCATCTGCTTATCACCTGAACCCCTCTGCCTATGGCCCCACCCGCCCCATGTTTCACAGACATTGTGGACTTGCCAAAATTGGATAAAACTGTACGGATTGCTCTCGTTTCATGTTAAATTACAAATCTGTTTAATAAAGAAGATTCATCATTCTTAaaaaaaaaaaaaaaaaaaaaaaa
>XM_007228731.2
TCTGGGTCCTTCCGAAATCTACGTGCACCTTTTTGAAACAGGAAATCACACATTCATATTAACTGCAGataagtttatgtttaaatCGGATTAATTCGGATATTTCAGCATGCTGTCTATGTTCAAATCGATTCCGACGCATATGGATTACAAAGGACAGAAACTTGCAGAGCAGATTTTCCAGGGCATCATCCTCGTCTCTGCGgtCATTGGATTCATTTATGGTCTTATAATTGAGCAGTTTGGATGGACTGTTTATATAATGTTAGCTGGATTCACTGTCTCTTGTTTGCTCACACTGCCTCCATGGCCCATGTACAGACAGAACCCCCTCACCTGGCAGCCTGCTTTACCCGAGGCCCCCGTAGAGAGCCGTGAAAAGCCTCAGGAGAatttaaagaagaagaaacacaAGTAGAACACCATCTGCTTATCACCTGAACCCCTCTGCCTATGGCCCCACCCGCCCCATGTTTCACAGACATTGTGGACTTGCCAAAATTGGATAAAACTGTACGGATTGCTCTCGTTTCATGTTAAATTACAAATCTGTTTAATAAAGAAGATTCATCATTCTTA

Function

symbol description
spcs1 Predicted to be involved in protein targeting to ER and signal peptide processing. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of signal peptidase complex. Predicted to be integral component of endoplasmic reticulum membrane. Orthologous to human SPCS1 (signal peptidase complex subunit 1).

NR:

description
signal peptidase complex subunit 1-like

GO:

id name namespace
GO:0006465 signal peptide processing biological_process
GO:0005787 signal peptidase complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008233 peptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU263040 True 592 TUCP 0.41 5 30809794 30830946
TU263041 False 591 TUCP 0.41 5 30809794 30830946
XM_007228731.2 False 579 mRNA 0.43 4 30828732 30830957

Neighbor

gene id symbol gene type direction distance location
LOC103040946 LOC108435972,LOC107714490,LOC107566450,LOC108254900 coding downstream 7286 30729235 ~ 30802508 (-)
LOC103043315 NA coding downstream 89549 30718976 ~ 30720245 (-)
ptprg ptprg,ptprga,LOC107752167,LOC106583020 coding downstream 1050169 29302534 ~ 29759625 (-)
cse1l cse1l,LOC107750990,LOC107699361 coding downstream 1518191 29280150 ~ 29291603 (-)
LOC103040276 NA coding downstream 1531230 29269921 ~ 29278564 (-)
gnl3 NA coding upstream 16340 30847297 ~ 30856549 (-)
sfmbt1 sfmbt1 coding upstream 364865 31195822 ~ 31230829 (-)
LOC103036366 prkcd,prkcdb,LOC108435819,LOC107696837,LOC107728641,LOC107656045,LOC107600299 coding upstream 407514 31238471 ~ 31287104 (-)
LOC103035852 LOC108435806 coding upstream 474610 31305567 ~ 31370546 (-)
fezf2 fezf2,fezf1,LOC108247338,LOC106530279 coding upstream 599934 31430891 ~ 31435487 (-)
G193818 NA non-coding downstream 80932 30724432 ~ 30728862 (-)
G193770 NA non-coding downstream 208896 30537778 ~ 30600898 (-)
G193764 NA non-coding downstream 304757 30436885 ~ 30505037 (-)
G193736 NA non-coding downstream 600816 30156138 ~ 30208978 (-)
G193723 NA non-coding downstream 1003879 29804482 ~ 29805915 (-)
G193846 NA non-coding upstream 13098 30844055 ~ 30845956 (-)
G193866 NA non-coding upstream 62670 30893627 ~ 30911740 (-)
G193886 NA non-coding upstream 137362 30968319 ~ 30983362 (-)
G193889 NA non-coding upstream 180330 31011287 ~ 31011543 (-)
G193891 NA non-coding upstream 187790 31018747 ~ 31019226 (-)
G193737 NA other downstream 629668 30165761 ~ 30180126 (-)
G193541 NA other downstream 2211156 28597555 ~ 28598638 (-)
LOC111195343 LOC108434908 other downstream 2223572 28576107 ~ 28586222 (-)
LOC111195422 si:dkey-33m11.6,LOC108411515,LOC108255079,LOC107572850,LOC107714486,LOC107680422 other downstream 2596724 28194379 ~ 28213070 (-)
tmem167b tmem167b other downstream 2794182 28010991 ~ 28015612 (-)
LOC103037496 mustn1,LOC103037496,LOC103359875,LOC107091502 other upstream 339341 31170298 ~ 31194049 (-)
trnae-cuc_20 NA other upstream 343850 31174807 ~ 31174878 (-)
cadps cadps,LOC107549847 other upstream 619846 31450803 ~ 31654210 (-)

Expression


Co-expression Network