G193968


Basic Information

Item Value
gene id G193968
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 31301480 ~ 31304310 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU263212
tatttaaattacaaaaattgcAGAAatgattgactgaagttcagtttaattatttactctatttagtcttgaaaccgagttgaagttacttaaattcatctgaaattaaatgtaattaaaaaaaagcaaatgcagaaagttgcgaaacattttttaaaagtaaattttactcatcttttttttttttttacattgccttccattgaaagtttagaaggttttatctGTCCCCTGTAAAGCTGTTGCTGTATATTTACATGGATACACATGTTTTCggacagtgatgatatttttaattttggagGCCAGTAACAAATTAGCCTTTTGATTGGTTCATATGTGTTACTTCATAAGAATTGTTATTGACTTATCATACAGTCATACAAATTAACATGAGGTCCATCAGTTTTGCTCATTTCAATATtgctgtgtgtatttaagctgctcaaaccacacacacagtacagatttactgctgctgttgtctttcacactgtttaatCAAGGGATACACGGCAATCTGTAACGTCTAGCTCGATTAAAAATATGTCAGCAGTCAAATATTCTATCCTATCTGACTCAAACTCAACCAGAGCTGCTGTTaaatcaaatcattaataacaataattcttgggacaatatattgtccattaaaaaactgttattGTGACTAACTGTAGCCAAGGCCTCATAACAAAACGATCTAGTGTGGTCTATTAAAGCTCTGTGGATGCCTGTTGATGCAAGGTGTAAAAAACTTcattgaaaaaaatgtgaaaaattaattGACAGGGATTTATTTGATTCAGTTTATTTcgtttacatttaaaacagtgtaTTGCTAATCAActcttttttaaccatttttgagAGTGAATCCAATGCCACATTAGCTGCCCTTCAGCTTCATTTGGAGGTTTTACCACAAATgtcttttaaaaacaaaacaagaggcATAATATCCAAGTCATGCAGAAGCAGAAATAAAGTTGAGTACAAAACTGTTAGATTTATTCCAGGAAAAATGACCGGGCCTGTAGTAAAGTTCTGAAGTTCTGAAGTGCAGTATCAGTAGTGTATCAGGTTGAATATCAGCCGGCTGTATTTTGATAGACGATATGTAAACATATTGCGTTATTGAAAGAAATATATTCATTCACACAGTTTTTTCAACAAACGCTTTGATACGAGACTGTATATTGTAAGTGAAGTTAGCTGTACATTTATTTCATCGGGAGTTTTTCGAGTAATtaaggtggggggggggggggtgtaataTAATTTGATTTGTATGGGGGTGCTGTAACTGTGCCATGATCTTCCAGCAGCTTGCATtacagtttatatacagtatttaacttCACTTTTCTTACTGTAGGCCAATCTGAAGTGCACTtactgaagctgaagctgatgtttttttatttttgtttggttATATTTGTTGTACTATCAGCTGTCCGTATATTTTGAGGCCTGACATTAGCCTAGAGTTCTTTGAACACTCAATACATTAAACTTAGTACACCATGGGGCACTTTGGggtttcccagacaggaatTACAGTAGGTCTAGTAgtcctagtcttggactacacagcattttttttcctgaagaGTGCATTAATTGaattagtgtgccttataatccagtgcaccatATGTTTTAAtcctaccagtcaggtattaagacgCGTTtacttctggccacgtcacgcgtacAGAATCTAAAAGAGGATTCGGCTCAGTTTAACTgaacgtgagcggctggtggagcaatggagacttcagaagggaaactcagagctcagtagctcattcacccatagtaaaaccaagtaggagaaacaaaataattaagcaAGCTCCAAAGCCAAAAAGGAACACGGTAGAGTCCACgctaaaaccaggattaatatCGTATTGGCATTTAAACAGTGGGGAGAGCTACGTGACCTGAAAGGGCTctctggaatcggattcatcaaAACACTACTTTTctttattcaaattttctatACTGTCTATCCAACTGAATTGGGGTTGGTGCTGGACTAAAAACAGACTATAAACACTGATGTCGTGCACTGCTTTGTCTCTGTACTGGATTTCCAATGAAAAACGACCTTATAAGCCCACATTTTGATATAACCGGGGTTAACTCACTCCAACCCCATATAAATCTAAACACTAAATACTGCTGTATTTACTCCTAAACACTGaataacatgaaacactggGAGGACTGAAAGGAAGACTAGAGGGAACAGGTGTTTACAGATACACTGTATAAGGCCTGTCAGTGGCTGCGGCAGAGCCTACTACATCAACTGAGCCTTTTTACTGTAGACCTTAATGAATGGGACGTCCTGTAACTGGCTTCTGTTTTGAGCGTCATCCGCTTACTGTTCCTTCTCTCTGAACGTGCAGTTGAGGTTTCttatacaatgcaaaaaaaacacacgtttgttctgccttttttttgtatacgtatatatataatcGAGATTAAAACAGAAGCACAGTCTCtaatcttaaaaaagaaaaaaaactttttttgttaccaAAACAGCATAAGGTCAGAGGTCCTATACTGTACTGCATTGTGATTATAGCATATACCTGTATCTCGCCTATACATATAAGTGGAATCTCgaacaatgtaaatgtaaatgtatatatatatatataaatataaaaaaagaatctcCACgaccttttgtttttttttctgtttgcactgatatctgatattaagaaagaaaaaaagaattatgATATGTCAGCAGTTttatctccatgtttttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU263212 True 2811 lncRNA 0.36 2 31301480 31304310

Neighbor

gene id symbol gene type direction distance location
LOC103036366 prkcd,prkcdb,LOC108435819,LOC107696837,LOC107728641,LOC107656045,LOC107600299 coding downstream 14376 31238471 ~ 31287104 (-)
sfmbt1 sfmbt1 coding downstream 70651 31195822 ~ 31230829 (-)
gnl3 NA coding downstream 444931 30847297 ~ 30856549 (-)
LOC103040946 LOC108435972,LOC107714490,LOC107566450,LOC108254900 coding downstream 498972 30729235 ~ 30802508 (-)
LOC103043315 NA coding downstream 581235 30718976 ~ 30720245 (-)
LOC103035852 LOC108435806 coding upstream 1257 31305567 ~ 31370546 (-)
fezf2 fezf2,fezf1,LOC108247338,LOC106530279 coding upstream 126581 31430891 ~ 31435487 (-)
LOC107197084 NA coding upstream 435561 31739871 ~ 31747170 (-)
thoc7 thoc7,LOC107739288 coding upstream 474047 31778357 ~ 31785020 (-)
psmd6 psmd6,LOC107656032,LOC107696848 coding upstream 536798 31841108 ~ 31844991 (-)
G193964 NA non-coding downstream 106642 31194164 ~ 31194838 (-)
G193959 itih3,LOC108435863,LOC105912272,LOC101062864,LOC101070262 non-coding downstream 132597 31137974 ~ 31168883 (-)
G193962 NA non-coding downstream 150238 31148645 ~ 31151242 (-)
G193961 itih3a,itih3,LOC108435863,LOC108435869 non-coding downstream 155543 31144331 ~ 31145937 (-)
G193891 NA non-coding downstream 282254 31018747 ~ 31019226 (-)
G193978 NA non-coding upstream 107609 31411919 ~ 31414467 (-)
G193980 NA non-coding upstream 113439 31417749 ~ 31418526 (-)
G194034 NA non-coding upstream 191692 31496002 ~ 31497236 (-)
G194038 NA non-coding upstream 218432 31522742 ~ 31523803 (-)
G194040 NA non-coding upstream 242243 31546553 ~ 31571288 (-)
LOC103037496 mustn1,LOC103037496,LOC103359875,LOC107091502 other downstream 107431 31170298 ~ 31194049 (-)
trnae-cuc_20 NA other downstream 126602 31174807 ~ 31174878 (-)
spcs1 spcs1,LOC107680421,LOC107744856 other downstream 470523 30809794 ~ 30830957 (-)
G193737 NA other downstream 1121354 30165761 ~ 30180126 (-)
G193541 NA other downstream 2702842 28597555 ~ 28598638 (-)
cadps cadps,LOC107549847 other upstream 146493 31450803 ~ 31654210 (-)

Expression


Co-expression Network