G193980


Basic Information

Item Value
gene id G193980
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 31417749 ~ 31418526 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU263226
TGAcgatgtggagcagtggaactgtattctctggaatgatggttgGTGCTCCATTCAGTACTTAGGAATATTTTGGGGACTGGTGGGGGTTGATGAGGTAAAGGAGGGTggtgacctcactaatgcttgACTTGTCATtcaaatcaaatcctcacagcaaagcAAGAGAGTTACCACAACAAAatagaataaactcttttttatttccattgatttcacaagaaatttaaatatatgtgtcTAAATGCTTTTGTCCACAGAGTGTATTTTTTCAGAGTACAAACATAAGCCAATCAAATCTCAAATCCACACATGTTTAACTAATAGGAATGAGAAGTTTGAATTGGTACTAGTGATACTAGTGCACCACCTTGTGGAGACAGTCATAAAGTCAATCAGTTGAGCCTACAAATATAAAGCATAGCTAAATGATCAAATTTACACTAAATAATATTGGAAAAGCATGGTGCATTAAAGTGTTTCACACTTCataaccttgtatctccaaaatggcatttacaggagaaggaaaaatcattaactttcaataaaagtgaatgtaaaaagattttggagcatttctgttggcCAATTCATCTTGAAATGGTGATACAATGTTAAAACTGCCAGATTtatattatgtcaaaaagtaaacatgtcaaaaatggagattcAAGGTTTTTGCATCTCAGATTTTACAAATAATTGAAAATACTTATGTATGAGAGTTTTCATTCACAAGATTGGAAAACAACAAATCTGATGTAATACCAATCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU263226 True 778 lncRNA 0.33 1 31417749 31418526

Neighbor

gene id symbol gene type direction distance location
LOC103035852 LOC108435806 coding downstream 47203 31305567 ~ 31370546 (-)
LOC103036366 prkcd,prkcdb,LOC108435819,LOC107696837,LOC107728641,LOC107656045,LOC107600299 coding downstream 130645 31238471 ~ 31287104 (-)
sfmbt1 sfmbt1 coding downstream 186920 31195822 ~ 31230829 (-)
gnl3 NA coding downstream 561200 30847297 ~ 30856549 (-)
LOC103040946 LOC108435972,LOC107714490,LOC107566450,LOC108254900 coding downstream 615241 30729235 ~ 30802508 (-)
fezf2 fezf2,fezf1,LOC108247338,LOC106530279 coding upstream 12365 31430891 ~ 31435487 (-)
LOC107197084 NA coding upstream 321345 31739871 ~ 31747170 (-)
thoc7 thoc7,LOC107739288 coding upstream 359831 31778357 ~ 31785020 (-)
psmd6 psmd6,LOC107656032,LOC107696848 coding upstream 422582 31841108 ~ 31844991 (-)
LOC111195428 kdm1b coding upstream 485709 31904235 ~ 31907805 (-)
G193978 NA non-coding downstream 3282 31411919 ~ 31414467 (-)
G193968 NA non-coding downstream 113439 31301480 ~ 31304310 (-)
G193964 NA non-coding downstream 222911 31194164 ~ 31194838 (-)
G193959 itih3,LOC108435863,LOC105912272,LOC101062864,LOC101070262 non-coding downstream 248866 31137974 ~ 31168883 (-)
G194034 NA non-coding upstream 77476 31496002 ~ 31497236 (-)
G194038 NA non-coding upstream 104216 31522742 ~ 31523803 (-)
G194040 NA non-coding upstream 128027 31546553 ~ 31571288 (-)
G194046 NA non-coding upstream 178838 31597364 ~ 31702252 (-)
G194055 LOC108435731,LOC108255025,LOC107696850,LOC107550476,LOC107739284 non-coding upstream 277746 31696272 ~ 31697770 (-)
LOC103037496 mustn1,LOC103037496,LOC103359875,LOC107091502 other downstream 223700 31170298 ~ 31194049 (-)
trnae-cuc_20 NA other downstream 242871 31174807 ~ 31174878 (-)
spcs1 spcs1,LOC107680421,LOC107744856 other downstream 586792 30809794 ~ 30830957 (-)
G193737 NA other downstream 1237623 30165761 ~ 30180126 (-)
G193541 NA other downstream 2819111 28597555 ~ 28598638 (-)
cadps cadps,LOC107549847 other upstream 32277 31450803 ~ 31654210 (-)

Expression


Co-expression Network