G194038


Basic Information

Item Value
gene id G194038
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 31522742 ~ 31523803 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU263308
TGACTTGCAGCGTTATCTCAGTGCTTCAGTGTAGTTCTctagcaccaaggctggagcagtattagcattagccactaaccacgctaagcgctagctcttttgccgttcagaggtgagtattatcggactgtagcctgctgataaccccagctagcactgctggagcagcattagcattagccgctaaccgtgctaagcgctagctctttcgtaatatcaccctggcttaccagaaaattcagggtttctcagtgtagcactgtcgggcggTTAACTGCtaaggctgctgctgctgctgctccagccttagtaaaaatctggaaatctaagattactaaaaataaacagtagtgctttactcacccaaataaacagttttaggagtaaaatctgtgtagattaacatccagcactcgtttgactttaaaatatatatatttttttaaggatcACAGTTTTGTTACCTAGTTTAGCCTTAATTTAAGTTAGTTACCCTGAATAGGCTGCATTTGAGTCACATAATGCCCCTTATAATCTGGCTTATAGTGCAACAAATATGGTACATTGAGATGTTATTGCaaacagataaagataaagGACTTAAACTAACTGAATGCATTAATTCAGAaatggtgtccacaaacatttggacatatagtgtacatTACTCTGGTAGATACTGCTAGTATACATACAGTAATACTCCGGAAGATACTTTCAGCACTGGATCAATGAACAACCAACACTCTGCACCATGCAACCCCTTCCCCATCAAAACACACAACATAGACTGGTACCCTCTGTTTTACAGTATTCATTCTGTTCACTAACAGTTTAATATCTCAGATTTCTTCCCTGTCACTCAAAGAATGCCACAGATTCCTTAACCCACTGTAATGCTCTTTAACTGCACAGCCGTAGCTGTGAGCTGGTAACCAAACTAACTCTTGTCGAAAAGACTAAACTTAACTGGTATGTTTGAAACTTGCATTT

Function

GO:

id name namespace
GO:0005102 signaling receptor binding molecular_function
GO:0005515 protein binding molecular_function
GO:0005179 hormone activity molecular_function
GO:0030545 receptor regulator activity molecular_function
GO:0048018 receptor ligand activity molecular_function
GO:0098772 molecular function regulator molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU263308 True 993 lncRNA 0.40 2 31522742 31523803

Neighbor

gene id symbol gene type direction distance location
fezf2 fezf2,fezf1,LOC108247338,LOC106530279 coding downstream 87255 31430891 ~ 31435487 (-)
LOC103035852 LOC108435806 coding downstream 152196 31305567 ~ 31370546 (-)
LOC103036366 prkcd,prkcdb,LOC108435819,LOC107696837,LOC107728641,LOC107656045,LOC107600299 coding downstream 235638 31238471 ~ 31287104 (-)
sfmbt1 sfmbt1 coding downstream 291913 31195822 ~ 31230829 (-)
gnl3 NA coding downstream 666193 30847297 ~ 30856549 (-)
LOC107197084 NA coding upstream 216068 31739871 ~ 31747170 (-)
thoc7 thoc7,LOC107739288 coding upstream 254554 31778357 ~ 31785020 (-)
psmd6 psmd6,LOC107656032,LOC107696848 coding upstream 317305 31841108 ~ 31844991 (-)
LOC111195428 kdm1b coding upstream 380432 31904235 ~ 31907805 (-)
prickle2 prickle2,LOC107590162,LOC107728631,LOC107656034,LOC107739290,LOC107551119,LOC107696846 coding upstream 405923 31929726 ~ 32080712 (-)
G194034 NA non-coding downstream 25506 31496002 ~ 31497236 (-)
G193980 NA non-coding downstream 104216 31417749 ~ 31418526 (-)
G193978 NA non-coding downstream 108275 31411919 ~ 31414467 (-)
G193968 NA non-coding downstream 218432 31301480 ~ 31304310 (-)
G193964 NA non-coding downstream 327904 31194164 ~ 31194838 (-)
G194040 NA non-coding upstream 22750 31546553 ~ 31571288 (-)
G194046 NA non-coding upstream 73561 31597364 ~ 31702252 (-)
G194055 LOC108435731,LOC108255025,LOC107696850,LOC107550476,LOC107739284 non-coding upstream 172469 31696272 ~ 31697770 (-)
LOC111195341 NA non-coding upstream 370699 31894502 ~ 31899990 (-)
G194105 NA non-coding upstream 378005 31901808 ~ 31902072 (-)
LOC103037496 mustn1,LOC103037496,LOC103359875,LOC107091502 other downstream 328693 31170298 ~ 31194049 (-)
trnae-cuc_20 NA other downstream 347864 31174807 ~ 31174878 (-)
spcs1 spcs1,LOC107680421,LOC107744856 other downstream 691785 30809794 ~ 30830957 (-)
G193737 NA other downstream 1342616 30165761 ~ 30180126 (-)
G193541 NA other downstream 2924104 28597555 ~ 28598638 (-)

Expression


Co-expression Network