G194055 (LOC108435731,LOC108255025,LOC107696850,LOC107550476,LOC107739284)


Basic Information

Item Value
gene id G194055
gene name LOC108435731,LOC108255025,LOC107696850,LOC107550476,LOC107739284
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 31696272 ~ 31697770 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU263328
tgaaataccACCTTGTTAATTACGGTTCCTTCGACTCGACTTCAACTACTGCAAGAACACTGCAGTACGTCCAGGTTCAGATAGTAGCTCATTTAATAGTTCATTTGTGTGGgggaataaataaaaagatgatTTTATGACTGGCTAAGAGATCAGCCACAATACGGTCGTTTAATTTTGTGAAGGATGGACCGCATGCATGTCTGCTCTGAACGTATGAACACAGACGGCATAGTGAGAACAGGGTAAGGCCCGGGAGTCAGTTGGTCCGTTGATATGGGGGGTGGGGGGCAGTGTTATTAGAAGATCAGTGCACCCCGTTCATGATGTGTTTCTGGTGGATCTCCAGAGGTGTGGGGTGGTCCTGGTTATGCTGGGCGGGACTCAGGTCCTCCTCCCACAGCCGGGCGTTCTTCCGGATCTCGTCCAGCGCGTACTCCTGCAGAATGGTCCCGTTCTCAAACACCGTCACCAGCATGTCCTCCTCAGGTTTGCCGACACCCCTCTCCACTGTCTCTATAAACCCGTCAGAGTTTCTCCTCAGAGAAAGACGACCTCGCTTTGATCCTTTAGACGGGTCCGTCACTGGCTGCTTATAGACGTCCA

Function

NR:

description
PREDICTED: nicotinamide phosphoribosyltransferase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU263328 True 606 lncRNA 0.51 2 31696272 31697770

Neighbor

gene id symbol gene type direction distance location
fezf2 fezf2,fezf1,LOC108247338,LOC106530279 coding downstream 260785 31430891 ~ 31435487 (-)
LOC103035852 LOC108435806 coding downstream 325726 31305567 ~ 31370546 (-)
LOC103036366 prkcd,prkcdb,LOC108435819,LOC107696837,LOC107728641,LOC107656045,LOC107600299 coding downstream 409168 31238471 ~ 31287104 (-)
sfmbt1 sfmbt1 coding downstream 465443 31195822 ~ 31230829 (-)
gnl3 NA coding downstream 839723 30847297 ~ 30856549 (-)
LOC107197084 NA coding upstream 42101 31739871 ~ 31747170 (-)
thoc7 thoc7,LOC107739288 coding upstream 80587 31778357 ~ 31785020 (-)
psmd6 psmd6,LOC107656032,LOC107696848 coding upstream 143338 31841108 ~ 31844991 (-)
LOC111195428 kdm1b coding upstream 206465 31904235 ~ 31907805 (-)
prickle2 prickle2,LOC107590162,LOC107728631,LOC107656034,LOC107739290,LOC107551119,LOC107696846 coding upstream 231956 31929726 ~ 32080712 (-)
G194040 NA non-coding downstream 124984 31546553 ~ 31571288 (-)
G194038 NA non-coding downstream 172469 31522742 ~ 31523803 (-)
G194034 NA non-coding downstream 199036 31496002 ~ 31497236 (-)
G193980 NA non-coding downstream 277746 31417749 ~ 31418526 (-)
G193978 NA non-coding downstream 281805 31411919 ~ 31414467 (-)
LOC111195341 NA non-coding upstream 196732 31894502 ~ 31899990 (-)
G194105 NA non-coding upstream 204038 31901808 ~ 31902072 (-)
G194153 NA non-coding upstream 383245 32081015 ~ 32081371 (-)
G194142 NA non-coding upstream 383738 32081508 ~ 32083630 (-)
G194234 NA non-coding upstream 632556 32330326 ~ 32334659 (-)
cadps cadps,LOC107549847 other downstream 42062 31450803 ~ 31654210 (-)
LOC103037496 mustn1,LOC103037496,LOC103359875,LOC107091502 other downstream 502223 31170298 ~ 31194049 (-)
trnae-cuc_20 NA other downstream 521394 31174807 ~ 31174878 (-)
spcs1 spcs1,LOC107680421,LOC107744856 other downstream 865315 30809794 ~ 30830957 (-)
G193737 NA other downstream 1516146 30165761 ~ 30180126 (-)

Expression


Co-expression Network