LOC111195341


Basic Information

Item Value
gene id LOC111195341
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 31894502 ~ 31899990 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU263404
ATTGGCAAATTATTGAGCTATTTgtaatggaaataaataaacagtatattttttattttaggtaaacGGGAAACAAGGAAAACGGCATCAGCACCACCTAAAAAAAGAGGTGTGCTAAACAAAAGGACACACAGAGACAAGCGCCCTCTTGTGACAGCTCTGATAATGAGCCTTTGGTTGAGCTGGTGAAGAAGAAGAGGCAGCCGGAGATGAAGCGGGCGGTGGTGCTGCTGAAGCGGATGTCTAACAGAGACATTATTAACATGATTACACAGGGACACGAATGCAGCCAAGTGCAGAAGAGCACAGTCAAAGTGGGTAAGAACCACAGCAGCTCC
>XR_002651582.1
ttacttacttaatgGGAGATGGCCAAGGAGGACACCATTGTTGAAAACAAGACATAACTGGAATTTTCCAAACTACATTTTGACAAGCCACAAAGCTTGTGGGAGAATGTCATATGgacaaatgaaacaaaaacttTTTGCCAAGGCGCATCAGCTCCCTGTTTACAGACGGAAGAATTAAGCAAAGCAAGAAAAGAACACTGTCCGtatactgtgaagcatggaTGAGGCTCTGTTATGTTCtcgggctgctttgctgcataTGGCACAGGGAGTCTTGAAACTGTGCAGGGTTCAATGAAATGTCAAGATTATCAAGGGATTGTAGAGAGAAATTTGATGCCCAGTGTCAAAAAGCTTGGTCGCAGGTCATGGGTCTTGCATCATGACAATGACTTGAAACACACAGCTATAAAAACACCCAATGGCTAAGAGGAAAACATCAGACTATTCTGAAGTGGTCTTCTATGAGccctgacctaaatcctattGAGCAACCTGAGAGAGCTGAAGCAGTTTGATCATGAGGAGTGGGAAAAAATACCTGCAGAAGTTTTGTTGACAGTTACAGAAATCGTTTGATTGCAGTGATTGCCTCAAAAGGTTGTGcaacaaaatcaaaaacaaatgtaaaaataatcaaataaatgtattttttttttaccagataaAAAAGAGCTCTCCAAATCAGAGGATGATGAATCGCTCCTGACGCTGATGAAGaggaagaacaaaaaaacaggcaCAGAGGAGACAGCAGTGCTAGATTCCAACAAGACAAGAAGTCCAAGAAAGCAAAAAACAGAAGTAAAGACCGAAAAGCACAGACAGGCATCACCATCACAAAAGACCTCCcaaaaaagagcaagaaaaggtaaacGGGAAACAAGGAAAACGGCATCAGCACCACCTAAAAAAAGAGGTGTGCTAAACAAAAGGACACACAGAGACAAGCGCCCTCTTGTGACAGCTCTGATAATGAGCCTTTGGTTGAGCTGGTGAAGAAGAAGAGGCAGCCGGAGATGAAGCGGGCGGTGGTGCTGCTGAAGCGGATGTCTAACAGAGACATTATTAACATGATTACACAGGGACACGAATGCAGCCAAGTGCAGAAGAGCACAGTCAAAGTGGATGAGAAGAGTAAAGCAAGAA

Function

GO: NA

KEGG:

id description
ko05032 Morphine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU263404 False 338 lncRNA 0.44 2 31897591 31898384
XR_002651582.1 True 1152 lncRNA 0.42 5 31894502 31899990

Neighbor

gene id symbol gene type direction distance location
psmd6 psmd6,LOC107656032,LOC107696848 coding downstream 49511 31841108 ~ 31844991 (-)
thoc7 thoc7,LOC107739288 coding downstream 109482 31778357 ~ 31785020 (-)
LOC107197084 NA coding downstream 147332 31739871 ~ 31747170 (-)
fezf2 fezf2,fezf1,LOC108247338,LOC106530279 coding downstream 459015 31430891 ~ 31435487 (-)
LOC103035852 LOC108435806 coding downstream 523956 31305567 ~ 31370546 (-)
LOC111195428 kdm1b coding upstream 4245 31904235 ~ 31907805 (-)
prickle2 prickle2,LOC107590162,LOC107728631,LOC107656034,LOC107739290,LOC107551119,LOC107696846 coding upstream 29736 31929726 ~ 32080712 (-)
adamts9 adamts9 coding upstream 199476 32099466 ~ 32196761 (-)
magi1 magi1 coding upstream 379812 32279802 ~ 32481485 (-)
G194046 NA non-coding downstream 192250 31597364 ~ 31702252 (-)
G194055 LOC108435731,LOC108255025,LOC107696850,LOC107550476,LOC107739284 non-coding downstream 196732 31696272 ~ 31697770 (-)
G194040 NA non-coding downstream 323214 31546553 ~ 31571288 (-)
G194038 NA non-coding downstream 370699 31522742 ~ 31523803 (-)
G194034 NA non-coding downstream 397266 31496002 ~ 31497236 (-)
G194105 NA non-coding upstream 1818 31901808 ~ 31902072 (-)
G194153 NA non-coding upstream 181025 32081015 ~ 32081371 (-)
G194142 NA non-coding upstream 181518 32081508 ~ 32083630 (-)
G194234 NA non-coding upstream 430336 32330326 ~ 32334659 (-)
G194244 NA non-coding upstream 581941 32481931 ~ 32482201 (-)
cadps cadps,LOC107549847 other downstream 240292 31450803 ~ 31654210 (-)
LOC103037496 mustn1,LOC103037496,LOC103359875,LOC107091502 other downstream 700453 31170298 ~ 31194049 (-)
trnae-cuc_20 NA other downstream 719624 31174807 ~ 31174878 (-)
spcs1 spcs1,LOC107680421,LOC107744856 other downstream 1063545 30809794 ~ 30830957 (-)
G193737 NA other downstream 1714376 30165761 ~ 30180126 (-)

Expression


Co-expression Network