G194142


Basic Information

Item Value
gene id G194142
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 32081508 ~ 32083630 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU263433
CGCGGCAGAAAACACATGACGTGACTTACGCGACCAGGGAAAAACTGTAGTCCAAACAACTATAGGCGAGGCACTAATATTATAACGACTAGTGAACAACCTCAGCTGTACATCACTTCCCTACACTCATATAGAGAGAACAGGAGGAAGAGCAGAATCAGAGCTTTATTCTGAGtctgagagacagatacagatctACAGAAGCTGTAAagactcaaaactacaaaacaccggTCGCGGACGTGACGAGAAAACCCCGCCTGTTATCAGCAGGCGACGCTCCGCGGCGGCAGCAGCACAACGCAAACACAAGTGGCCAGCGAAAATCGCGTTTGGTGTGTAAGAAAACTCAACCAGGAAACTTACCATATCAGCTGTGCCAGAGATCCTCTAGAACGGAGATCACCCTCTTAAAAGTCTCTTCCGATATTGTTAACTACAAAAATAGGTCGAGTAGGCAAGAAGTCCTGAGTGCaagttttgctatagcagcatggtAGTGTGAATGAAGAGCAGTAACACGATAAAGTGTCTCTGTGCGGTTAAAGAgacagtgttgttttaaataagtaattgtccttgtaaagtgtcagtgcagtgtgtttggcTAGGCGGagtttaaagtggcagtccgtattgttttgtttccaaaccaaaagcagaagcatttctgattggaaaagggacaaaatattgtgtttaatggtgccagtgtgctggaacgaccatgccTGCTaagtctaatatattcatttaatatatacacttaagaaGTAGTGATGGCAAATCGAGACTTTCTGAAGCACTGAAGACTTTTTCCAGCTGTATCGGGAAAAAAAGGTACAGTCCACTGAGCTTCATAATTCAGTGGACATTAGCGACATCTGATGGCAAAAACCTGAAAGTGCTTTGTGTATTTAGTGGACGAGCTTGTAAAACTGTTCCAGTGCATTAATAAGACTGTTgaggttttaaataaaaactgataaaacGAAATGGCAGAATACTTTGATGTCTggataatgtaatgtattaaattaagACATTCcgtaatctattttaaattaatatataatacactcAGAATGTAAATTAAGATTTAAAGCTATGTTTAAATGCCCTCtctaattgtaattttaagcaACATCTCACCAACTAGTCTTCACACAGTAGCAGCACTGCTAGCGCCTTAAACGCGTTGGCTGTCGAAAAATGTAAATCTATACCTaagttttctttgatttttgagGAAAACACGATATtctgatttttaaaattaaatgaatatccTGTACAAGTAGTTTGTAACtaattttatttgagtttttaaCACATTAGCACCATTCACCTCCATTCATTGATGACTTACTCGCTGGCGTCCTCTAGCGgttaacagtcatttactgatataagTGAGTAGGCTCGCCATTAACCAGCTGTGGCGTTGCGTTCTTAGCAACGAGATAGCTAACTACGCTAGGTAGGACCAGGCCCAGCTAaacgtttaaaataaaataaaaaaactaccaTAAAGGACTCTAAAGTAATGTTATATGCTGGTTTGTGggtatattttctgttttaagcCTGCTGTTTGTGGGGGACCCAATGCCGCTTTTGTCTCCCCACAGAGACGCAGACAGACCCCGCCGCCGCCGCTCACTACAGCCCGGGGACTCGCATGTAAACAAGGCCGCTTTAGTGTCgttcacaaaaataaatacagtcgAGCGAGTCAGAACCCgccaattaaattaaatatccgCGCCTGTAGGTTAAATCATGTATTGCCTTTTATGTTAACTGCCTTAGAGCGTTCATTTTTTAGTGGGGAACgtagttagttaactaggttaacgACATCAGCGACTGCGAATGAGGGTTAAATGTGTTCAATGGATTTTATTCACTGTTTGTTAGATTCATTCACCGTGCTTGGTGCTCGTCAGTAGACGGTTCTTTTTATAGATTAAAACCATCAAAAAAGCGAATCATATCTATTCACAAGTGTAATtttagtgtcttttttttttatttagtttgaatCACTTTTCCAAGAGTCGAATCTTTTGAAAAGTAGTTAGAATCAGTTTTCAAAAAGATTCAAATATTTTTGCAAGTAG

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU263433 True 2123 lncRNA 0.39 1 32081508 32083630

Neighbor

gene id symbol gene type direction distance location
prickle2 prickle2,LOC107590162,LOC107728631,LOC107656034,LOC107739290,LOC107551119,LOC107696846 coding downstream 796 31929726 ~ 32080712 (-)
LOC111195428 kdm1b coding downstream 173703 31904235 ~ 31907805 (-)
psmd6 psmd6,LOC107656032,LOC107696848 coding downstream 236517 31841108 ~ 31844991 (-)
thoc7 thoc7,LOC107739288 coding downstream 296488 31778357 ~ 31785020 (-)
LOC107197084 NA coding downstream 334338 31739871 ~ 31747170 (-)
adamts9 adamts9 coding upstream 15836 32099466 ~ 32196761 (-)
magi1 magi1 coding upstream 196172 32279802 ~ 32481485 (-)
G194153 NA non-coding downstream 137 32081015 ~ 32081371 (-)
G194105 NA non-coding downstream 179436 31901808 ~ 31902072 (-)
LOC111195341 NA non-coding downstream 181518 31894502 ~ 31899990 (-)
G194046 NA non-coding downstream 379256 31597364 ~ 31702252 (-)
G194055 LOC108435731,LOC108255025,LOC107696850,LOC107550476,LOC107739284 non-coding downstream 383738 31696272 ~ 31697770 (-)
G194234 NA non-coding upstream 246696 32330326 ~ 32334659 (-)
G194244 NA non-coding upstream 398301 32481931 ~ 32482201 (-)
cadps cadps,LOC107549847 other downstream 427298 31450803 ~ 31654210 (-)
LOC103037496 mustn1,LOC103037496,LOC103359875,LOC107091502 other downstream 887459 31170298 ~ 31194049 (-)
trnae-cuc_20 NA other downstream 906630 31174807 ~ 31174878 (-)
spcs1 spcs1,LOC107680421,LOC107744856 other downstream 1250551 30809794 ~ 30830957 (-)
G193737 NA other downstream 1901382 30165761 ~ 30180126 (-)

Expression


Co-expression Network