LOC103047485 (rpl22,LOC103047485,LOC108414460,LOC107737211,LOC107555851)


Basic Information

Item Value
gene id LOC103047485
gene name rpl22,LOC103047485,LOC108414460,LOC107737211,LOC107555851
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 8332182 ~ 8343347 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228499.2
TCGATTTCAGTCTGGCTCAAAGCGCATGCGCAGCCTCTGCTCTCCCTTTCTGCCTGATCTATCCGCCATGGCTCTGTTTAGGAAGCCAGCTGCTAAGGGTGGCAAAAAGAAGAAGCAGGTCCTGAAATTCACCCTGGACTGCACCCACCCTGTTGAGGATGGCATCATGGATGCTGCCAACTTTgagcagttcctgcaagagcGCATCAAGGTGAATGGGAAAGCTGGTAATTTGGGCGGTGGCGTGGTTTCCATCGAAAGGAGCAAGAGCAAAATCACAGTAACTTCAGAGGTCCCATTCTCCAAGAGGTACCTGAAATATCTCACCAAGAAGTACCTAAAGAAGAACAACCTGCGTGACTGGCTGCGCGTTGTGGCGAACACCAAGGAGAGTTACGAATTGCGCTACTTCCAGATCAACcaggatgaagaggaggaagaggatgacGATTAAATCCTTGCACACTGCTCTTATGGAAGTCAATAAAATTTTCAAAAGAGCCGA

Function

symbol description
rpl22 Enables RNA binding activity. Acts upstream of or within T cell differentiation in thymus. Predicted to be located in ribosome. Is expressed in intermediate cell mass of mesoderm. Orthologous to human RPL22 (ribosomal protein L22).

NR:

description
60S ribosomal protein L22

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02891 RP-L22e, RPL22; large subunit ribosomal protein L22e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228499.2 True 505 mRNA 0.49 4 8332182 8343347

Neighbor

gene id symbol gene type direction distance location
LOC103024538 draxin,LOC108413332,LOC106565906 coding upstream 87185 8193011 ~ 8244997 (+)
pank4 pank4,LOC107742899 coding upstream 157012 8141553 ~ 8175170 (+)
LOC103023171 LOC103023171,LOC108438613 coding upstream 283365 8025007 ~ 8048817 (+)
LOC103023694 LOC103023694,LOC108438614,LOC108280988 coding upstream 321622 7828510 ~ 8010560 (+)
LOC103021633 LOC108438615 coding upstream 591352 7515747 ~ 7740830 (+)
LOC103046266 chd5,LOC107555845,LOC107691315 coding downstream 2725 8346072 ~ 8431062 (+)
LOC103024232 arhgef10la,LOC108438575,LOC107695083,LOC106565901 coding downstream 95366 8438713 ~ 8733125 (+)
klhdc7a LOC108438577 coding downstream 1492752 9836099 ~ 9839322 (+)
dhrs3 dhrs3,LOC108439496,LOC107555693,LOC107685629,LOC107749419,LOC107703071,LOC103042050,LOC106582983 coding downstream 1680645 10023992 ~ 10041141 (+)
LOC103039471 NA coding downstream 1776686 10120033 ~ 10132709 (+)
G188063 rap1aa,LOC106582744,LOC107751450,LOC101070080 non-coding upstream 192677 8121744 ~ 8139505 (+)
G188062 NA non-coding upstream 211554 8120330 ~ 8120628 (+)
G188051 NA non-coding upstream 282070 8049638 ~ 8050112 (+)
G188009 NA non-coding upstream 330805 8000834 ~ 8001377 (+)
G187904 NA non-coding upstream 953594 7377151 ~ 7378588 (+)
G188149 NA non-coding downstream 156817 8500164 ~ 8501035 (+)
G188178 NA non-coding downstream 426961 8770308 ~ 8771086 (+)
LOC111195453 NA non-coding downstream 475809 8819156 ~ 8820096 (+)
G188185 NA non-coding downstream 505959 8849306 ~ 8849567 (+)
G188186 NA non-coding downstream 512159 8855506 ~ 8891767 (+)
agtrap agtrap other upstream 60470 8256796 ~ 8271712 (+)
LOC111195452 NA other upstream 218940 8112003 ~ 8113242 (+)
trnaq-uug_4 NA other upstream 1139956 7192154 ~ 7192226 (+)
LOC103029365 NA other upstream 1233510 7077165 ~ 7098672 (+)
p3h1 NA other upstream 2533203 5779891 ~ 5798979 (+)
LOC103032765 igsf21,igsf21a,LOC108438574,LOC107749415,LOC107727841,LOC107685626 other downstream 940448 9283795 ~ 9819955 (+)
G188325 NA other downstream 1510960 9854307 ~ 9856995 (+)
LOC111195371 NA other downstream 1758408 10101755 ~ 10106530 (+)
G188624 NA other downstream 1960013 10303360 ~ 10303665 (+)
G188771 NA other downstream 2504724 10848071 ~ 10852736 (+)

Expression


Co-expression Network