agtrap (agtrap)


Basic Information

Item Value
gene id agtrap
gene name agtrap
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 8256796 ~ 8271712 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228501.3
GCTGCAGTCACATGGCTGAGTCCGgcagtgcagcagcagcacagtgcTGGACTTCACTAACTTTTCCCCCAGTCTCAATCTGAAGTGCTGAGGACAATCACAGCTCACAATATGGAAATCCCGGCCATAAACCTCAAGgccATCGTGCTGGTCCACTGGTTGCTGACTATCTGGGGTTGCATGGCCATGCCACCAAACTCCTACGCCTGGGGAAATTTCAGCGTTTTGGCTGTGGGTGTGTGGGCCATCGCTCAGAGGGACTCAATAGATGCTGTGGTAATGTTCCTGATCGGCATGACTGCGACGATACTGACAGACATCATCCACTTTGGAATTTTCTACCCTGCGTTTCATGAAACCAATGACTTCATTCGCTTCAGTATGGGCATGGCCATCCTCAGCCTCATCCTCAAGCCTCTGTCCTGCTTCTTTGTCTATCAGATGTACCGCGAGAGGGGCGGAGACTACAACATCAACTTTGGCTTTCCCACAGTGACTCGGAACAGAGACGCCTACCAGTCCATTGACCAGCAGGACCAGTCCAGCTCGGCCAAACCATTCAACCAAGCAGAGGACCACAAACCCGGGGTTCGCACATACTGAAGactgcattcattcattcataagcCTCTGTCTGAGCGAATGTTGTGTTGGTTAGAGGTCTGGTAAATGTTAGCAGGTGCAGTTTGGAGGGCAGTAGTGCACcataagttatatttttttgttggtttacAAGTTTTCAGCgaaattctgtttattttttcgaGCCTTAAAAAGTCGATTGCTGTATTCATATGGATAGTCATACACTGAATCATTTCATTTCAATGTGCCAGATTGTCTAGGTTTTCTAAGTATATGAATCAAAGGTACTTTTTagacaatttattttataagcaatgagattaatgtaatatattttacaatattcaaATCAGAGCTCTAGTATCTAGTTGGATTTGTATTGTTCCAATATGTTTGGATTCTAACAATGCAATTATTaccaaatataaaattaaaaatagataaCGTGTTACATTTACTTGATTCAAATATGTTGCTCACTTCCACATTAATAacatatacactgtaaacccactatTTGTTTGAACTCACATATAGTTAAGGTTCGTTTtgcataaaattggatatttccaaacagtcaggtgaacatttgtggacacatacatttttttttttttttt
>XM_007228502.2
ATGCTGCAGTCACATGGCTGAGTCCGgcagtgcagcagcagcacagtgcTGGACTTCACTAACTTTTCCCCCAGTCTCAATCTGAAGTGCTGAGGACAATCACAGCTCACAATATGGAAATCCCGGCCATAAACCTCAAGgccATCGTGCTGGTCCACTGGTTGCTGACTATCTGGGGTTGCATGGCCATGCCACCAAACTCCTACGCCTGGGGAAATTTCAGCGTTTTGGCTGTGGGTGTGTGGGCCATCGCTCAGAGGGACTCAATAGATGCTGTGGTAATGTTCCTGATCGGCATGACTGCGACGATACTGACAGACATCATCCACTTTGGAATTTTCTACCCTGCGTTTCATGAAACCAATGACTTCATTCGCTTCAGTATGGGCATGGCCATCCTCAGCCTCATCCTCAAGCCTCTGTCCTGCTTCTTTGTCTATCAGATGTACCGCGAGAGGGGCGGAGACTACAACATCAACTTTGACTTGGAGACGTCAGTGGACAGTCGCTGCACTACAGACAGTGCTGACAGCAGTCTGTTTGGTCGTCGTTACTGAAATCACTCCCTACGCTTCTGTCCACACTTTTATATTCCAACCCAAATTCACCCtgtttattgtgtttgtgtatcttTCTTTATTCTTCACCCCCGCCCCCCACCCTGCCACCTCTTACCTGCTGTTTATATGTGTTGTGAACACACACTTACGCTGTCTCTTGATTCTTCATAAAATCTTCTGTTTTAGTGTAAATGTTCAGCTGATTTTTATTCTGTTGTGAATTAATTGTTAGTGTATGGATTTATGTGGATATTTTTGCGtgagtaaatgtgtgtttgtgtgttttttgtacaTACATATTTATTCTGATTTAGATAAGTCTTGAAAACTACGGTCCAAACATTTGGAATCtcttactattttttatttactctaaaaaatatgtatgtataataaaaatatatgtattga
>XR_002651599.1
GCTGCAGTCACATGGCTGAGTCCGgcagtgcagcagcagcacagtgcTGGACTTCACTAACTTTTCCCCCAGTCTCAATCTGAAGTGCTGAGGACAATCACAGCTCACAATATGGAAATCCCGGCCATAAACCTCAAGgccATCGTGCTGGTCCACTGGTTGCTGACTATCTGGGGTTGCATGGCCATGCCACCAAACTCCTACGCCTGGGGAAATTTCAGCGTTTTGGCTGTGGGTGTGTGGGCCATCGCTCAGAGGGACTCAATAGATGCTGTGGTAATGTTCCTGATCGGCATGACTGCGACGATACTGACAGACATCATCCACTTTGGAATTTTCTACCCTGCGTTTCATGAAACCAATGACTTCATTCGCTTCAGTATGGGCATGGCCATCCTCAGCCTCATCCTCAAGCCTCTGTCCTGCTTCTTTGTCTATCAGATGTACCGCGAGAGGGGCGGAGACTACAACATCAACTTTGGCTTTCCCACAGTGACTCGGAACAGAGACGCCTACCAGTCCATTGACCAGCAGGACCAGTCCAGCTCGGCCAAACCATTCAACCAAGCAGAGGACCACAAACCCGGGGTTCGCACATACTGAAGactgcattcattcattcataagcCTCTGTCTGAGCGAATGTTGTGTTGGTTAGAGGTCTGGTAAATGTTAGCAGGTGCAGTTTGGAGGGCAGTAGTGCACcataagttatatttttttgttggtttacAAGTTTTCAGCgaaattctgtttattttttcgaGCCTTAAAAAGTCGATTGCTGTATTCATATGGATAGTCATACACTGAATCATTTCATTTCAATGTGCCAGATTGTCTAGGTTTTCTAAGTATATGAATCAAAGGTACTTTTTagacaatttattttataagcaatgagattaatgtaatatattttacaatattcaaATCAGAGCTCTAGTATCTAGTTGGATTTGTATTGTTCCAATATGTTTGGATTCTAACAATGCAATTATTaccaaatataaaattaaaaatagataaCGTGTTACATTTACTTGATTCAAATATGTTGCTCACTTCCACATTAATAacatatacactgtaaacccactatTTGTTTGAACTCACATATAGTTAAGgtgaacatttgtggac

Function

symbol description
agtrap Predicted to be involved in regulation of blood pressure. Predicted to act upstream of or within angiotensin-activated signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in notochord. Orthologous to human AGTRAP (angiotensin II receptor associated protein).

NR:

description
PREDICTED: type-1 angiotensin II receptor-associated protein isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228501.3 True 1205 mRNA 0.42 5 8256798 8271712
XM_007228502.2 False 971 mRNA 0.44 5 8256796 8267935
XR_002651599.1 False 1143 misc_RNA 0.43 6 8256798 8271689

Neighbor

gene id symbol gene type direction distance location
LOC103024538 draxin,LOC108413332,LOC106565906 coding upstream 11799 8193011 ~ 8244997 (+)
pank4 pank4,LOC107742899 coding upstream 81626 8141553 ~ 8175170 (+)
LOC103023171 LOC103023171,LOC108438613 coding upstream 207979 8025007 ~ 8048817 (+)
LOC103023694 LOC103023694,LOC108438614,LOC108280988 coding upstream 246236 7828510 ~ 8010560 (+)
LOC103021633 LOC108438615 coding upstream 515966 7515747 ~ 7740830 (+)
LOC103047485 rpl22,LOC103047485,LOC108414460,LOC107737211,LOC107555851 coding downstream 60470 8332182 ~ 8343347 (+)
LOC103046266 chd5,LOC107555845,LOC107691315 coding downstream 74360 8346072 ~ 8431062 (+)
LOC103024232 arhgef10la,LOC108438575,LOC107695083,LOC106565901 coding downstream 167001 8438713 ~ 8733125 (+)
klhdc7a LOC108438577 coding downstream 1564387 9836099 ~ 9839322 (+)
dhrs3 dhrs3,LOC108439496,LOC107555693,LOC107685629,LOC107749419,LOC107703071,LOC103042050,LOC106582983 coding downstream 1752280 10023992 ~ 10041141 (+)
G188063 rap1aa,LOC106582744,LOC107751450,LOC101070080 non-coding upstream 117291 8121744 ~ 8139505 (+)
G188062 NA non-coding upstream 136168 8120330 ~ 8120628 (+)
G188051 NA non-coding upstream 206684 8049638 ~ 8050112 (+)
G188009 NA non-coding upstream 255419 8000834 ~ 8001377 (+)
G187904 NA non-coding upstream 878208 7377151 ~ 7378588 (+)
G188149 NA non-coding downstream 228452 8500164 ~ 8501035 (+)
G188178 NA non-coding downstream 498596 8770308 ~ 8771086 (+)
LOC111195453 NA non-coding downstream 547444 8819156 ~ 8820096 (+)
G188185 NA non-coding downstream 577594 8849306 ~ 8849567 (+)
G188186 NA non-coding downstream 583794 8855506 ~ 8891767 (+)
LOC111195452 NA other upstream 143554 8112003 ~ 8113242 (+)
trnaq-uug_4 NA other upstream 1064570 7192154 ~ 7192226 (+)
LOC103029365 NA other upstream 1158124 7077165 ~ 7098672 (+)
p3h1 NA other upstream 2457817 5779891 ~ 5798979 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other upstream 4861953 3392387 ~ 3394843 (+)
LOC103032765 igsf21,igsf21a,LOC108438574,LOC107749415,LOC107727841,LOC107685626 other downstream 1012083 9283795 ~ 9819955 (+)
G188325 NA other downstream 1582595 9854307 ~ 9856995 (+)
LOC111195371 NA other downstream 1830043 10101755 ~ 10106530 (+)
G188624 NA other downstream 2031648 10303360 ~ 10303665 (+)
G188771 NA other downstream 2576359 10848071 ~ 10852736 (+)

Expression


Co-expression Network