LOC103040327 (LOC108425717)


Basic Information

Item Value
gene id LOC103040327
gene name LOC108425717
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 23980543 ~ 23988199 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228561.3
GATTGGTTAGATAACTGTTGGTCAGATGGATATAAAGACCAGAAGAACAGCTGATTATTGATCTTCAGCTTCTCCAGTATCAAAGATCTAATTGTTAAAATGACCAGACTCACAATCCTTGCAGGCCTGTGCCTGGTGCTGTGCCATTTTGGCTCAACACAAGAACTGGGCTGCTATTTCACCAACTGGTCCCAGTACAGACCAGGCGTTGCGAAGTATATGCCTTCAAATGTGGACCCTTTCCTCTGCACCCATCTGTTCTACGCTTTCGCCCTCATTGACAACGCCAACGAGCTGGTCACCTCCGAGTGGAATGATGAGACTTTCTATGCAGCTTTCAATTATCTGAAGAACAAGAACCCAGCCCTGAAGACACTTTTGGCAGTTGGTGGATGGACCTTCGGCTCGACTCAATTCTCCATCATGGTGTCCACTCCTGAAAACCGTCAGAAGTTCATCCAGTCCTCCATCACATTCCTGAGAACTCATGGATTTGATGGTCTGGATCTGGACTGGGAATATCCTGGAGCCAGAGGCAGCCCTCCTGAGGACAAGCAGAGATTCACCCTGCTGTGCAAGGAAATGAAAGCAGCCTTTGTTGATGAGGGCAGAATTACTAAGCGTCCAAGGCTTATACTCAGTGCTGCGGTGCCAGCGGGCAAGAAAGACATCGACACTGGCTATGAAATCAGTGAGCTTGGCAACTATCTGGATTTTGTCAATGTGATGACCTACGATTTCCACGGAGCCGCCGACAACTTTACAGGACACAACAGCCCCCTGTACCAGGGAGCTCAGGACCAGGGCGATCAAGTCTTTTTAAACACGGACTACGCCATGAGGTACTGGAGGGACAATGGTATCCCTGTGGAGAAGCTGAGGATGGGATTTGCCACCTACGGCCGTACCTTCACCCTCTCTTCTGCAAATAATGGGGTTGGAGCTCCAACTAGTGGACCTGCTGCACCGGGAACCTACACCCAGGAAGCTGGATTCTGGTCCTACTATGAGATTTGTGGTTTCCTGGAAGGAACCAAAGTTGAGTGGATCACCGATCAGAGAGTGCCCTATGCCACCAAAGGGAACGAATGGGTCGGCTTTGACACAAAAGAAAGCTTTGAAATGAAGGTCCAATatctaaaagaaaacaaattcggAGGAGCTTTCGTTTGGGCTCTGGATCTGGATGACTTTGCTGGACACTTCTGTGGACAAGGGAACCATCCTCTGATGGGTCATCTAAACAAGCTTCTGAATATTAtaacaaccaccaccaccatcacttCTCACAAGAACGCTCCAGGCTTCTGCAGTGGAAATCCCAAGCCCGATGGACTGTACCCTCATGAAAACCCCAACCAATTTTATGACTGTGTGGCTGGAGAAACTACTGTGAGGAAATGTGGAACGGGAACAGTGTTTAATGATGACTGTAAGTGCTGTGCCTGGGCGAAACATTAAAACCCAATAAACGGGCATGGTGCATTCATAGCATTCCATGCATGACACTGtga

Function

NR:

description
PREDICTED: acidic mammalian chitinase-like

GO:

id name namespace
GO:0006032 chitin catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0004568 chitinase activity molecular_function
GO:0008061 chitin binding molecular_function

KEGG:

id description
K01183 E3.2.1.14; chitinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228561.3 True 1514 mRNA 0.48 12 23980543 23988199

Neighbor

gene id symbol gene type direction distance location
zc3h11a NA coding downstream 10376 23957828 ~ 23970167 (-)
LOC103046362 maf1,LOC108425756,LOC108254834,LOC107727190,LOC107685718,LOC107602775,LOC106583327 coding downstream 24206 23948531 ~ 23956337 (-)
LOC111195461 NA coding downstream 179126 23798758 ~ 23801417 (-)
LOC103041505 pnp4a,LOC103041505,LOC108411380,LOC107727193,LOC107685744,LOC107655042,LOC107727769,LOC107559547 coding downstream 284296 23682209 ~ 23696247 (-)
LOC103042306 NA coding downstream 300152 23673108 ~ 23680391 (-)
LOC103040645 chia.2,chia.3,LOC108425699,LOC107555079,LOC107685745,LOC107727181,LOC107655977,LOC107727762 coding upstream 6424 23994623 ~ 24001948 (-)
LOC103040944 LOC108425718 coding upstream 27347 24015546 ~ 24027045 (-)
nfasc nfasc coding upstream 159628 24147827 ~ 24283699 (-)
LOC103045744 NA coding upstream 785840 24774039 ~ 24800901 (-)
lrrn2 lrrn2,LOC108425772,LOC107603068,LOC107739267,LOC107727852,LOC107675837,LOC107656005 coding upstream 1246915 25235114 ~ 25354477 (-)
G192484 NA non-coding downstream 96005 23876635 ~ 23884538 (-)
G192439 dvl1,LOC108411373,LOC107685713,LOC107560111,LOC107749512,LOC107655081,LOC107727776 non-coding downstream 373512 23602319 ~ 23607031 (-)
G192428 NA non-coding downstream 421367 23544535 ~ 23559176 (-)
G192365 NA non-coding downstream 651230 23329074 ~ 23329313 (-)
G192336 NA non-coding downstream 755940 23216176 ~ 23224603 (-)
G192574 NA non-coding upstream 3997 23992196 ~ 24049734 (-)
G192578 NA non-coding upstream 67095 24055294 ~ 24055585 (-)
G192579 NA non-coding upstream 94605 24082804 ~ 24083308 (-)
G192589 NA non-coding upstream 272435 24260634 ~ 24262555 (-)
G192591 NA non-coding upstream 292175 24280374 ~ 24280691 (-)
G192251 adipor1,LOC107749488,LOC107385668 other downstream 921738 23054633 ~ 23058805 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other downstream 1176901 22786163 ~ 22803642 (-)
amhr2 NA other downstream 1257638 22709549 ~ 22722905 (-)
alas1 alas1,LOC106583798 other downstream 1618085 22349347 ~ 22362458 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other downstream 2128901 21846969 ~ 21851642 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other upstream 51047 24039246 ~ 24105898 (-)
G192815 mdm4 other upstream 1223476 25211675 ~ 25217550 (-)
LOC111195415 tfeb other upstream 1886711 25874910 ~ 25878653 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other upstream 2723054 26711253 ~ 26724106 (-)
G193097 NA other upstream 3043464 27031663 ~ 27033089 (-)

Expression


Co-expression Network