LOC103040645 (chia.2,chia.3,LOC108425699,LOC107555079,LOC107685745,LOC107727181,LOC107655977,LOC107727762)


Basic Information

Item Value
gene id LOC103040645
gene name chia.2,chia.3,LOC108425699,LOC107555079,LOC107685745,LOC107727181,LOC107655977,LOC107727762
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 23994623 ~ 24001948 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228562.3
TTTAGAGGCATGCTGGTCGTTCTCGCAGCACCCAAGaagaaaaacaacTGAAAAGACGAGACTGCTCCATCACCATCAACATGGGCAGGCTTACTCTTCTAGCAGGCTTGTGCTTGGTGCTGTGCCACTTCGCTACATCATCCAAGCAAATGGGCTGCTATTTCACCAACTGGTCCCAGTATAGACCTGGTATTGGGAAGTATATGCCCGCTAATGTGGACCCGTTCCTCTGCACACATCTGTTCTATGCCTTCGCCATGATCAACCATGCCAACGAGCTGATCACGTACGAGTGGAATGATGAGACCCTCTACCAGTCTTTCAATGCCCTGAAGAACAGCAATCCCGCTCTCAAAACTCTTCTGGCTGTTGGCGGATGGAATTTTGGCTCAACCCAGTTCTCCATCACCGTATCAAATGCTGCCAACCGTCAGAAGTTCATCCAGTCCTCCATCTCATTCCTGAGAACTCATGGATTTGATGGTATGGATCTGGACTGGGAATATCCTGGATCCAGAGGCAGCCCTCCTGAGGACAAGCAGAGATTCACCCTGCTGTGCAAGGAACTGCTGGAAGCTTATGAGGCTGAGGCAAATGCTACAGGACAGCCTAGACTCCTGCTGTCTGCTGCAGTATCAGCTGGCAAAGGAACCATCGATGCTGGATATGAAATCGCCGAAATTGCCAAGTATCTGGATTTCATCAACGTGATGACATACGACTTCCACGGAACCTGGGAAAGATTCACCGGCCACAACAGCCCCCTGTACCAGGGATCTAAAGACGAGGGAGATCTCATCTATTTCAACACTGACTACGCCATGAGGTACTGGAGGGACAACGGCACCCCAGTGGAGAAGCTGAGAATGGGATTTGCCACCTACGGCCGTACCTTCCGCCTCACCTCTGCTGAAGATGGAGTTGGAGCTCCAGCCAGTGGACCCGCTTCTGCTGGAACCTACACCCGCGAGGCAGGATTCTGGTCCTACTATGAGATCTGTGGCTTCCTCGAAGGAACAAAAATTCAGTGGATTGACGATCAGAGAGTGCCCTACGCCACCAAGAACAGCGAATGGGTTGGCTTTGACACCAAAGAAAGCTTTGAGACCAAGGTCCAATATCTGAAAGACAACAAGTTCGGAGGAGCTTTCGTTTGGGCTCTGGATCTGGATGACTTTGCTGGACAGTTCTGCGGACAAGGAAACCATCCTCTGATGGGTCATCTGCACAACCTCCTGGATATTGtgGTGCCTCCGAGGCCATCCACCACCACCCCTAAACCTGGTGCCTCAACCATTCCAGTAACaaccacccccaccaccactacCCACAAGCCCGGCCCAGGCTTCTGCAATGGAAAGCCCGATGGATTGTACCCTCATGAAGACCCCAACCAATTTTATGACTGTGTGGCTGGAGAAACTATTGTGAGGAAATGTGGACCGGGAACAGTGTTTAATGATGACTGTAAGTGTTGTGCCTGGGCGAAACATTAAAACCCAATAAACGGGCATGGTGCATTCATAGCATTCCATGCATGACACTGtga
>XM_022682683.1
CGTTCTCGCAGCACCCAAGaaaaacaacTGAAAAGACGAGACTGCTCCATCACCATCAACATGGGCAGGCTTACTCTTCTAGCAGGCTTGTGCTTGGTGCTGTGCCACTTCGCTACATCATCCAAGCAAATGGGCTGCTATTTCACCAACTGGTCCCAGTATAGACCTGGTATTGGGAAGTATATGCCCGCTAATGTGGACCCGTTCCTCTGCACACATCTGTTCTATGCCTTCGCCATGATCAACCATGCCAACGAGCTGATCACGTACGAGTGGAATGATGAGACCCTCTACCAGTCTTTCAATGCCCTGAAGAACAGCAATCCCGCTCTCAAAACTCTTCTGGCTGTTGGCGGATGGAATTTTGGCTCAACCCAGTTCTCCATCACCGTATCAAATGCTGCCAACCGTCAGAAGTTCATCCAGTCCTCCATCTCATTCCTGAGAACTCATGGATTTGATGGTATGGATCTGGACTGGGAATATCCTGGATCCAGAGGCAGCCCTCCTGAGGACAAGCAGAGATTCACCCTGCTGTGCAAGGAACTGCTGGAAGCTTATGAGGCTGAGGCAAATGCTACAGGACAGCCTAGACTCCTGCTGTCTGCTGCAGTATCAGCTGGCAAAGGAACCATCGATGCTGGATATGAAATCGCCGAAATTGCCAAGTATCTGGATTTCATCAACGTGATGACATACGACTTCCACGGAACCTGGGAAAGATTCACCGGCCACAACAGCCCCCTGTACCAGGGATCTAAAGACGAGGGAGATCTCATCTATTTCAACACTGACTACGCCATGAGGTACTGGAGGGACAACGGCACCCCAGTGGAGAAGCTGAGAATGGGATTTGCCACCTACGGCCGTACCTTCCGCCTCACCTCTGCTGAAGATGGAGTTGGAGCTCCAGCCAGTGGACCCGCTTCTGCTGGAACCTACACCCGCGAGGCAGGATTCTGGTCCTACTATGAGATCTGTGGCTTCCTCGAAGGAACAAAAATTCAGTGGATTGACGATCAGAGAGTGCCCTACGCCACCAAGAACAGCGAATGGGTTGGCTTTGACACCAAAGAAAGCTTTGAGACCAAGGTCCAATATCTGAAAGACAACAAGTTCGGAGGAGCTTTCGTTTGGGCTCTGGATCTGGATGACTTTGCTGGACAGTTCTGCGGACAAGGAAACCATCCTCTGATGGGTCATCTGCACAACCTCCTGGATATTGtgGTGCCTCCGAGGCCATCCACCACCACCCCTAAACCTGGTGCCTCAACCATTCCAGTAACaaccacccccaccaccactacCCACAAGCCCGGCCCAGGCTTCTGCAATGGAAAGCCCGATGGATTGTACCCTCATGAAGACCCCAACCAATTTTATGACTGTGTGGCTGGAGAAACTATTGTGAGGAAATGTGGACCGGGAACAGTGTTTAATGATGACTGTAAGTGTTGTGCCTGGGCGAAACATTAAAACCCAATAAACGGGCATGGTGCATTCATAGCATTCCATGCATGACACTGtga

Function

symbol description
chia.3 Predicted to enable chitin binding activity and chitinase activity. Predicted to be involved in chitin catabolic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be active in extracellular region. Is expressed in gut and intestinal bulb. Human ortholog(s) of this gene implicated in asthma and schizophrenia. Orthologous to several human genes including CHIT1 (chitinase 1) and CHIA (chitinase acidic).
chia.2 Predicted to enable chitin binding activity and chitinase activity. Predicted to be involved in chitin catabolic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be active in extracellular region. Is expressed in gut and liver. Human ortholog(s) of this gene implicated in asthma and schizophrenia. Orthologous to several human genes including CHIT1 (chitinase 1); CHIA (chitinase acidic); and OVGP1 (oviductal glycoprotein 1).

NR:

description
PREDICTED: acidic mammalian chitinase-like

GO:

id name namespace
GO:0006032 chitin catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0004568 chitinase activity molecular_function
GO:0008061 chitin binding molecular_function

KEGG:

id description
K01183 E3.2.1.14; chitinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228562.3 True 1549 mRNA 0.51 12 23994623 24001948
XM_022682683.1 False 1529 mRNA 0.51 12 23994623 24001931

Neighbor

gene id symbol gene type direction distance location
LOC103040327 LOC108425717 coding downstream 6424 23980543 ~ 23988199 (-)
zc3h11a NA coding downstream 24456 23957828 ~ 23970167 (-)
LOC103046362 maf1,LOC108425756,LOC108254834,LOC107727190,LOC107685718,LOC107602775,LOC106583327 coding downstream 38286 23948531 ~ 23956337 (-)
LOC111195461 NA coding downstream 193206 23798758 ~ 23801417 (-)
LOC103041505 pnp4a,LOC103041505,LOC108411380,LOC107727193,LOC107685744,LOC107655042,LOC107727769,LOC107559547 coding downstream 298376 23682209 ~ 23696247 (-)
LOC103040944 LOC108425718 coding upstream 13598 24015546 ~ 24027045 (-)
nfasc nfasc coding upstream 145879 24147827 ~ 24283699 (-)
LOC103045744 NA coding upstream 772091 24774039 ~ 24800901 (-)
lrrn2 lrrn2,LOC108425772,LOC107603068,LOC107739267,LOC107727852,LOC107675837,LOC107656005 coding upstream 1233166 25235114 ~ 25354477 (-)
LOC103039085 NA coding upstream 1506540 25508488 ~ 25554687 (-)
G192484 NA non-coding downstream 110085 23876635 ~ 23884538 (-)
G192439 dvl1,LOC108411373,LOC107685713,LOC107560111,LOC107749512,LOC107655081,LOC107727776 non-coding downstream 387592 23602319 ~ 23607031 (-)
G192428 NA non-coding downstream 435447 23544535 ~ 23559176 (-)
G192365 NA non-coding downstream 665310 23329074 ~ 23329313 (-)
G192336 NA non-coding downstream 770020 23216176 ~ 23224603 (-)
G192578 NA non-coding upstream 53346 24055294 ~ 24055585 (-)
G192579 NA non-coding upstream 80856 24082804 ~ 24083308 (-)
G192589 NA non-coding upstream 258686 24260634 ~ 24262555 (-)
G192591 NA non-coding upstream 278426 24280374 ~ 24280691 (-)
G192597 NA non-coding upstream 298258 24300206 ~ 24352058 (-)
G192251 adipor1,LOC107749488,LOC107385668 other downstream 935818 23054633 ~ 23058805 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other downstream 1190981 22786163 ~ 22803642 (-)
amhr2 NA other downstream 1271718 22709549 ~ 22722905 (-)
alas1 alas1,LOC106583798 other downstream 1632165 22349347 ~ 22362458 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other downstream 2142981 21846969 ~ 21851642 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other upstream 37298 24039246 ~ 24105898 (-)
G192815 mdm4 other upstream 1209727 25211675 ~ 25217550 (-)
LOC111195415 tfeb other upstream 1872962 25874910 ~ 25878653 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other upstream 2709305 26711253 ~ 26724106 (-)
G193097 NA other upstream 3029715 27031663 ~ 27033089 (-)

Expression


Co-expression Network