LOC103040944 (LOC108425718)


Basic Information

Item Value
gene id LOC103040944
gene name LOC108425718
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 24015546 ~ 24027045 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228563.3
GCCTGGACATGTTGAAGTTACCTGAGAGGACTGTCTGGGGATgagaaagGTGCTTTTCTGAAACAGTCTGGACATATTCAACACCACCATGTCAAAATTTACTCTCATAGCAGGACTGGGGCTCCTGCTGTCTCTTCAGATCGTCACCTCTACCAAGCTGGTTTGCTACTTCAGCAACTGGTCCCAGTACAGGCCGGGCAGCGGACGCTTCACTCCGGTGAATGTGGACCCCTTCCTCTGCACTCATGTCGTCTACGCCCTGGCCACCATCGGCCCCAACCAGCAGATCAACACCATAGAGTGGAACGATGAGACCATGTTCAAGGACCTGAACAACCTGAAGAACATAAACCCTGACCTGAAGACACTGCTGACGATTGGAGGCTTGGTCAATGGAATTAGCCCGTATATTGATATGGTGTCAACTCCAGCCAAGCGTGAGAACTTCATCCGCTCAGCGCTGATCTTCCTCCGGACTCACGGGTTTGACGGTCTGGACCTGGCCTGGGAGTTCCCGGGTCATAACGGCAGCCCCCCAGAGGACAAGCAGAGGTTTACTGCCCTGGTTCAGGAATTGAGACGAGCGATTGAGCAGGAGGCTAAAGACACCAGGAAGACCCCCCTGCTGCTCTCTGCTAAAGTTGCTGCACTGAGTACCACCATCGAAGCTGCTTATGAAGTTCCTGAAGTCACCAGTGAGGTGGACTTCGTCAGCATTATGAGCTACGACTACCACGGCTCCTGGGACAAGGTTACAGGACACAACAGCCCCCTTTTCAGGAGCTCCCTCGACAGTGGAAACCACATCTTCCACAACATCGAAGCGACAGTGTCATTCTGGATCAGTAAAGGAGCTCCGGCTGAGACTCTGCTGCTGGGTTTCCCCACGTACGGACGCACCTTTGAGCTGTCCACCTCTGCTAATGTCCTCGGAGCCCCAGCTAGTGGCCCTGCTAGCGCCGGATCCTACACTCGGGAAGCTGGATTCTGGGCCTATTATGAGATCTGCACGTTTGCAGCAGGAGGTAAAGTGGAATGGATTGACGAGCAGAGTGTGCCCTACGCCACTCAGGGAAACGCCTGGGTGGGCTACGATAACCAGGAGAGCTTTGCTGCCAAGGTTCAGTGGCTCAACTCCATGAATCTGGGTGGAGCATCAGTGTGGTCCCTCGACTTGGACGACTTTAGAGGAGATTTTTGCTCGGAGGGAGACTATCCTCTCGTTAACCGTCTACGCAGCTCACTGGGTTTCCCTCCCAAACCGACCACCACTCGCGCCCCGACCACCACCCCCGACCCCGTGGCCAACTTCTGCTCCGGAAAACCCGACGGCCTGTACGCCAACCCGGCTGACCAGAGCACTTACTTCCAGTGCTTCCGCGGGAACACCTACCTGCACCGCTGCCAGCCGGGCCTGGTGTACGTCGACGCCTGCAAATGCTGCAACTGGCCTTAAGATCACCATGTTCCATTCAtacaaacaaattaattaatttctgttttttttttaataaaatgaatatacctgtcaatcaataaaaatgcattttggaGATCATGTTTCATTGCTGTACTAGAATACTGGAACACTAATTTTCTGCATCTACCTTACTGTCGATGTGCTGTAAAATAGCTGCTTTTTGCCTTCAGCTttctatactgttttttttatattttatatattttacatacttTAAAGAGTAAATAAACACCCTGATTTTGGCTGACTCTACTCTCACCTCAAATTtgataaatgcaaaaaatggaCGATAAAGAGTGCTGCACTgaactgtgggatatgtgggcggggtctATTGCATTGAATAGGGATGTGATTTCAGTATTCAGAATACTCTACACACATTATAATACTGAATCTGGACCTTCTACCTTCAGGTAGAAATTGAAAATGTAGTTTGGAAGGGGcgttgggtgatgtatgggtttagaggtagggtaagagggagagctgattggctgagctgcagcagcagcagtgtgcctctgttagcggtgagacgcagatggttggacgtcagcaggtaGGGTGGTTGTACTGACTAATTGATTTGCATATTCTATGAGTGTCTATCTAAAGCAGTTGTTCTctaaagcagtggttctcaaacatttACCACCATGAACCAGCAAAACTCAAACTAAAAACTTAAACCAGCACCTTCAAGTCATCCACATGAACATATGCAAGCTAACTATggataaataatgtaataacgTGTAATAACACTGTTGGATATATTGATGTTactttaaaacataataaattaatGCTAATTCCAATAGTAATGCAACAACATGAAGTTAATTACATTTGGAGAAAGTTATATTCAATTTAGagatataatgtttttaaacgACAGTACACGTTATTTCATTGTCTCCAATGAAACCAGACATTGACAGACCCAAAGATTTAGACATTCCCTGGTACCCACAtgcatttattgtaaaattgttaaagttgtttttgatgcattaaaaacatttatttgg

Function

NR:

description
PREDICTED: acidic mammalian chitinase-like

GO:

id name namespace
GO:0006032 chitin catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0004568 chitinase activity molecular_function
GO:0008061 chitin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228563.3 True 2514 mRNA 0.47 12 24015546 24027045

Neighbor

gene id symbol gene type direction distance location
LOC103040645 chia.2,chia.3,LOC108425699,LOC107555079,LOC107685745,LOC107727181,LOC107655977,LOC107727762 coding downstream 13598 23994623 ~ 24001948 (-)
LOC103040327 LOC108425717 coding downstream 27347 23980543 ~ 23988199 (-)
zc3h11a NA coding downstream 45379 23957828 ~ 23970167 (-)
LOC103046362 maf1,LOC108425756,LOC108254834,LOC107727190,LOC107685718,LOC107602775,LOC106583327 coding downstream 59209 23948531 ~ 23956337 (-)
LOC111195461 NA coding downstream 214129 23798758 ~ 23801417 (-)
nfasc nfasc coding upstream 120782 24147827 ~ 24283699 (-)
LOC103045744 NA coding upstream 746994 24774039 ~ 24800901 (-)
lrrn2 lrrn2,LOC108425772,LOC107603068,LOC107739267,LOC107727852,LOC107675837,LOC107656005 coding upstream 1208069 25235114 ~ 25354477 (-)
LOC103039085 NA coding upstream 1481443 25508488 ~ 25554687 (-)
LOC103038137 NA coding upstream 1500597 25527642 ~ 25537003 (-)
G192484 NA non-coding downstream 131008 23876635 ~ 23884538 (-)
G192439 dvl1,LOC108411373,LOC107685713,LOC107560111,LOC107749512,LOC107655081,LOC107727776 non-coding downstream 408515 23602319 ~ 23607031 (-)
G192428 NA non-coding downstream 456370 23544535 ~ 23559176 (-)
G192365 NA non-coding downstream 686233 23329074 ~ 23329313 (-)
G192336 NA non-coding downstream 790943 23216176 ~ 23224603 (-)
G192578 NA non-coding upstream 28249 24055294 ~ 24055585 (-)
G192579 NA non-coding upstream 55759 24082804 ~ 24083308 (-)
G192589 NA non-coding upstream 233589 24260634 ~ 24262555 (-)
G192591 NA non-coding upstream 253329 24280374 ~ 24280691 (-)
G192597 NA non-coding upstream 273161 24300206 ~ 24352058 (-)
G192251 adipor1,LOC107749488,LOC107385668 other downstream 956741 23054633 ~ 23058805 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other downstream 1211904 22786163 ~ 22803642 (-)
amhr2 NA other downstream 1292641 22709549 ~ 22722905 (-)
alas1 alas1,LOC106583798 other downstream 1653088 22349347 ~ 22362458 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other downstream 2163904 21846969 ~ 21851642 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other upstream 12201 24039246 ~ 24105898 (-)
G192815 mdm4 other upstream 1184630 25211675 ~ 25217550 (-)
LOC111195415 tfeb other upstream 1847865 25874910 ~ 25878653 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other upstream 2684208 26711253 ~ 26724106 (-)
G193097 NA other upstream 3004618 27031663 ~ 27033089 (-)

Expression


Co-expression Network