thoc7 (thoc7,LOC107739288)


Basic Information

Item Value
gene id thoc7
gene name thoc7,LOC107739288
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 31778357 ~ 31785020 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228710.3
ATTTTGGAGGTGGTTCAGTGAAGGGTCTGTGGTGAACGTCAGTCTCTAAGCTACAGTACAGGAGGTTGGACAAATGGGGAGCATAACTGACGATGAGGTCATCCGGAAGCGCCTCCTCATTGATGGAGATGGTGCTGGAGATGACCGGCGTATAAATGTGCTGCTGAAGAGCTTCATcaaatggtgtcactcaaaTGTGACGCCAGAAGAAGGGTTTACTCAGTATCAGAGGATGCTGGGAACCTTGACGCAGTGCGAGTTCTCCATGGGAAAGACGCTGCTGGTGTACGATATGAACCTGAGAGAAATGGAGAACTATGAAAAGATTTACTCTGACATTGGGCAGAGCATATCATCAGCACATGAGAAGATAGCAGAGTGCAAGAAAGAAATCCAGAGGGCTAAGAGGATACGAAAGAACCGTCAAGaATATGATGCACTGGCAAAAGTAATCCAGCAACATCCAGACAGACATGAAACGATGAAGCAGCTTGCCGCTCTGGACAAAGAGCTTCAGCAGCTTTCACAAATTAAAGAGAATGTGGAGGACAAGttggAGCTTCGTAAGAAGCAGTTTCATGTGCTGCTTAGTACCATCCAGGAGCTTCAGCAAACACTTGAGAatGATGAAAAAATGGAAAGTGATGAAGcgagccaagaaagcccagcagaaAATGGAGACTAGTTTTtcactgtacattttttttttcttttaatgtaatttttcatGATTTCATGAACCAACAATGCaatgcattttgtttttataacagCTGAGTACCTGTTGGAATAAAGGTGATGTTTTAATA

Function

symbol description
thoc7 Predicted to enable RNA binding activity. Predicted to be involved in mRNA export from nucleus. Predicted to act upstream of or within RNA splicing; mRNA processing; and mRNA transport. Predicted to be located in cytoplasm and nucleus. Predicted to be part of THO complex part of transcription export complex. Orthologous to human THOC7 (THO complex 7).

NR:

description
THO complex subunit 7 homolog

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0000445 THO complex part of transcription export complex cellular_component

KEGG:

id description
K13176 THOC7; THO complex subunit 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228710.3 True 809 mRNA 0.43 9 31778357 31785020

Neighbor

gene id symbol gene type direction distance location
LOC107197084 NA coding downstream 31187 31739871 ~ 31747170 (-)
fezf2 fezf2,fezf1,LOC108247338,LOC106530279 coding downstream 342870 31430891 ~ 31435487 (-)
LOC103035852 LOC108435806 coding downstream 407811 31305567 ~ 31370546 (-)
LOC103036366 prkcd,prkcdb,LOC108435819,LOC107696837,LOC107728641,LOC107656045,LOC107600299 coding downstream 491253 31238471 ~ 31287104 (-)
sfmbt1 sfmbt1 coding downstream 547528 31195822 ~ 31230829 (-)
psmd6 psmd6,LOC107656032,LOC107696848 coding upstream 56088 31841108 ~ 31844991 (-)
LOC111195428 kdm1b coding upstream 119215 31904235 ~ 31907805 (-)
prickle2 prickle2,LOC107590162,LOC107728631,LOC107656034,LOC107739290,LOC107551119,LOC107696846 coding upstream 144706 31929726 ~ 32080712 (-)
adamts9 adamts9 coding upstream 314446 32099466 ~ 32196761 (-)
magi1 magi1 coding upstream 494782 32279802 ~ 32481485 (-)
G194046 NA non-coding downstream 76105 31597364 ~ 31702252 (-)
G194055 LOC108435731,LOC108255025,LOC107696850,LOC107550476,LOC107739284 non-coding downstream 80587 31696272 ~ 31697770 (-)
G194040 NA non-coding downstream 207069 31546553 ~ 31571288 (-)
G194038 NA non-coding downstream 254554 31522742 ~ 31523803 (-)
G194034 NA non-coding downstream 281121 31496002 ~ 31497236 (-)
LOC111195341 NA non-coding upstream 109482 31894502 ~ 31899990 (-)
G194105 NA non-coding upstream 116788 31901808 ~ 31902072 (-)
G194153 NA non-coding upstream 295995 32081015 ~ 32081371 (-)
G194142 NA non-coding upstream 296488 32081508 ~ 32083630 (-)
G194234 NA non-coding upstream 545306 32330326 ~ 32334659 (-)
cadps cadps,LOC107549847 other downstream 124147 31450803 ~ 31654210 (-)
LOC103037496 mustn1,LOC103037496,LOC103359875,LOC107091502 other downstream 584308 31170298 ~ 31194049 (-)
trnae-cuc_20 NA other downstream 603479 31174807 ~ 31174878 (-)
spcs1 spcs1,LOC107680421,LOC107744856 other downstream 947400 30809794 ~ 30830957 (-)
G193737 NA other downstream 1598231 30165761 ~ 30180126 (-)

Expression


Co-expression Network