LOC103025083 (LOC108431510,LOC107586924,LOC107756006,LOC107593103,LOC107704447,LOC105893506)


Basic Information

Item Value
gene id LOC103025083
gene name LOC108431510,LOC107586924,LOC107756006,LOC107593103,LOC107704447,LOC105893506
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12880822 ~ 12884782 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229612.2
tgtgtgtAAATACACCGTGTTTGTGACGCGGTTGGCTTCGGCGGCAGCTGATTGGTGGAGGCGCTGCTGTAGCGCTCGCGGTGTTTACCAGCtgagcagctccagcagtgtgGCAGTTGGTCTGTGGAGGGACGGGGAGAAGTTTTAGATCGATAAAAAGTCGATAATTTGCACTTTTCCGTGGTTTTAGCGGTCAAAGGGTTACACCGGGAAAAGCAGGAGCTTCTCTACAGCGCAGCTGGATGAGCGGGAATCTTTTGAGAAATAATATTTCACCATGAAAACCGAGGTTTCCACGGCTGTGAACTTCATTAGCACACTGCTGAGAGGGACTGGGCTTCTCTCAGAGGAGCAGCTGCACCACTTCAGCCTGTCTCTAGAGGAAGCTTTAGGAGAGCATTATCAGCACCACTGGTTTCCAGATGCTCCGTGCCGAGGTTCAGGCTACAGGTGCATCAGGATCAATCACAAGATGGACCCTTTGATTGGTAAAGCCGCCCTCACTATCGGACTGACCAGAGAGCAGCTGTTCTCTCTGTTACCGAGTGAGCTGACCATGTGGGTCGACCCGTACGAAGTGTCTTACCGGATAGGAGAGGACGGGTCCATTTGTGTCCTGTACGAGTCCGCGCCCCCATCACAGACAGACCCCAGCCCGGTGGACACCTGCAAAGATAAACTGAGGATCGGTCGATCAAGCCCGTCTAAGTCCTTCAACATGATGACTGTCTCCAGTTAACTCTATACTGAGCTACCTGGgtcatgtttatttttctatttttttttttttacattttgggcATTAAAgacttcctttttttattagtgattTGTTGTATTTGAGGAAAATTGATATATTTTGATTCAGTGCTTGATTTTAACTGTAAATGTttgtaaatgacttaaaaaaaatcaaattaaagattTCTTGATTTGTTAAGA

Function

NR:

description
PREDICTED: protein BTG1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229612.2 True 942 mRNA 0.46 3 12880822 12884782

Neighbor

gene id symbol gene type direction distance location
ippk ippk,LOC107755999,LOC107658385 coding downstream 26429 12820875 ~ 12854393 (-)
LOC111195440 NA coding downstream 95637 12770735 ~ 12785185 (-)
LOC103030591 LOC108435310,LOC108281021,LOC107715788,LOC107659540,LOC107575639 coding downstream 124639 12714488 ~ 12756183 (-)
gpr61 gpr61,LOC108434964 coding downstream 193704 12673366 ~ 12687118 (-)
LOC103029205 LOC103029205,LOC108435351,LOC107659543,LOC107715787 coding downstream 214603 12662572 ~ 12666219 (-)
shisa5 NA coding upstream 20548 12905330 ~ 12922980 (-)
nuf2 nuf2 coding upstream 41274 12926056 ~ 12940460 (-)
LOC103034476 zgc:77375,LOC108431553,LOC108254961,LOC107700631,LOC107758152 coding upstream 67728 12952510 ~ 12972311 (-)
LOC103027102 isy1,LOC108431508,LOC108254962,LOC107700632 coding upstream 89158 12973940 ~ 12980817 (-)
LOC111195380 NA coding upstream 98639 12983421 ~ 12990268 (-)
G189376 NA non-coding downstream 478 12879945 ~ 12880344 (-)
G189352 NA non-coding downstream 112111 12768010 ~ 12768711 (-)
G189349 NA non-coding downstream 169809 12709673 ~ 12711013 (-)
G189348 rrp9,LOC107659541 non-coding downstream 176110 12704268 ~ 12704712 (-)
G189345 sort1 non-coding downstream 222058 12653060 ~ 12658764 (-)
G189380 NA non-coding upstream 6052 12890834 ~ 12891269 (-)
G189381 NA non-coding upstream 10081 12894863 ~ 12896608 (-)
G189385 NA non-coding upstream 18155 12902937 ~ 12903160 (-)
G189402 NA non-coding upstream 145388 13030170 ~ 13032240 (-)
G189404 NA non-coding upstream 165777 13050559 ~ 13053733 (-)
LOC111195455 NA other downstream 166790 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other downstream 261256 12614912 ~ 12619566 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 485290 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 702212 12160542 ~ 12178610 (-)
G189055 NA other downstream 836529 12043913 ~ 12044293 (-)
tsen2 NA other upstream 178017 13062799 ~ 13076742 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 2433861 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 2524425 15409207 ~ 15466584 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 3460919 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 3684841 16569623 ~ 16599317 (-)

Expression


Co-expression Network