LOC103027392 (cnbp,cnbpb,LOC106583855,LOC107742030,LOC108431552,LOC106566283,LOC108254964,LOC107742027,LOC107675970)


Basic Information

Item Value
gene id LOC103027392
gene name cnbp,cnbpb,LOC106583855,LOC107742030,LOC108431552,LOC106566283,LOC108254964,LOC107742027,LOC107675970
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12994479 ~ 12998610 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229621.3
CGGGAGCGCGCGGGAGGGGGAGCGCGAGCGGGCCGTGCGCAAACCGCGTGTGGCGCAGCGCGGAGAGGAGGAACCGAACATAAACAGCGACGACTCACGTAGCCGAGTTTATAGGTTGAAAGGATGAGCAGCAACGAGTGCTTTGGGTGCGGCCGCACTGGCCACTGGATCAAGAACTGTCCAAATGCTGGACGGGGACGTGGCAAAGGTCGCGGAAGAGGAAAAGATCTTTTCTGTTACCGCTGTGGAGAGCCTGGCCATGTTGCTCGAGACTGTGAAAGAACTGAGGATGCCTGCTACAACTGTGGCAGGGGAGGCCACATCTCCAGAGACTGCAAGGAGCCCAAAAAGGAGAGGGAGCAGGTGTGCTACAACTGTGGCAAGGCCGGCCATGTGGCTCGCGACTGTGACCACGCCAATGAGCAGAAGTGTTACTCTTGTGGAGGATTTGGACACATTCAGAAAGGCTGTGAAAAAGTCAAGTGCTACAGGTGTGGCGAGATCGGCCACGTTGCTGTGCAGTGCAGTAAGGCGAGCGAAGTCAACTGCTACAACTGCGGCAAATCCGGTCACCTGGCAAAAGAATGCACCATCGAGGCCACTGCTTAATCCCATTTCCTTGGTTGCCCCTCCTTTTTTCTGATTGATGGTTGTATTATTTTCTCTGAATCCTCTTCACTGGCCAAAGGTTGGCAGATAGAGGCTAGTCCCAGGCCAGTGAGCTCTTGACACGTAAAAGGAGGAAAGGggtggaaaaagaaaacaaaatttcCACTTTCTtgcatttaatacaaaaaaagtttatgtTTAGTTTGGTAGAGGTGTTATGTATAATGCTTTGTTAAAGAACCCCCTTTCCATGCCACTGGTTAACAGGGATGAATGAGTTTAGTGGAAAGAAATGATGTCGATTCAGTCTCTCCGAGCTCGTCGAACGAAGCCTCGTTGAGAGATTgaggagggggaaaaaagaagTGTGAACTTCTGGGGATGATTTTTGCGTTTGTGGTTTTATCAGTGGGGATGGCTTAGGCTAAGAGTGATTGACCTGGATGAAGCAGTACAGGACTCAGCGGTCAGATCTGTCCGGGCCCAACCAGCAGTACGCAGCTAAGTGGAGAACACATTAATGAAACATGCTAATGACGAGCAAGTTTACAGCACATTCTGAGGataaacatggaattatttcaGAAAACTACATTCTTTGTTATGCGCAAGTTGTTGGACTGTGCAGAGCATATAAGTTGTTCGAGAAATATCAGGTGTATGAACCCATGATTGCAGCGCAgatggaaaaatgaaaataaaaacaaaacttaaaacgcAATATGCGTAGGAGGGATAAATAAGATTTGGAGTTGGGAGTAAAGGTGAATGTTTTCACAgaaatcaaaaatgttatttttgtacAATATCACTTAgactactgtaaaaaaatatcatttgcTTGTACTCAGTTTTTAAGTGGGAAGGTAAATGCAACTGAAGTCCTAGAACATAGAAATGTACTTTTAAACTATCAATAAAGCTGGAGGAAGAAGGGGAGTGAGACTAAAGCTTA
>XM_022682401.1
CGGGAGCGCGCGGGAGGGGGAGCGCGAGCGGGCCGTGCGCAAACCGCGTGTGGCGCAGCGCGGAGAGGAGGAACCGAACATAAACAGCGACGACTCACGTAGCCGAGTTTATAGGTTGAAAGGATGAGCAGCAACGAGTGCTTTGGGTGCGGCCGCACTGGCCACTGGATCAAGAACTGTCCAAATGCTGGACGGGGACGTGGCAAAGGTCGCGGAAGAGGAAAAGGTGAGAGCTTCTCATATTACTTGCTGTTTATAGGCTTGCGTATTGATATTTCTGCACTGTTTAGACGATTATCACTAAATTTCCATTTTTTGGTTCTAGATCTTTTCTGTTACCGCTGTGGAGAGCCTGGCCATGTTGCTCGAGACTGTGAAAGAACTGAGGATGCCTGCTACAACTGTGGCAGGGGAGGCCACATCTCCAGAGACTGCAAGGAGCCCAAAAAGGAGAGGGAGCAGGTGTGCTACAACTGTGGCAAGGCCGGCCATGTGGCTCGCGACTGTGACCACGCCAATGAGCAGAAGTGTTACTCTTGTGGAGGATTTGGACACATTCAGAAAGGCTGTGAAAAAGTCAAGTGCTACAGGTGTGGCGAGATCGGCCACGTTGCTGTGCAGTGCAGTAAGGCGAGCGAAGTCAACTGCTACAACTGCGGCAAATCCGGTCACCTGGCAAAAGAATGCACCATCGAGGCCACTGCTTAATCCCATTTCCTTGGTTGCCCCTCCTTTTTTCTGATTGATGGTTGTATTATTTTCTCTGAATCCTCTTCACTGGCCAAAGGTTGGCAGATAGAGGCTAGTCCCAGGCCAGTGAGCTCTTGACACGTAAAAGGAGGAAAGGggtggaaaaagaaaacaaaatttcCACTTTCTtgcatttaatacaaaaaaagtttatgtTTAGTTTGGTAGAGGTGTTATGTATAATGCTTTGTTAAAGAACCCCCTTTCCATGCCACTGGTTAACAGGGATGAATGAGTTTAGTGGAAAGAAATGATGTCGATTCAGTCTCTCCGAGCTCGTCGAACGAAGCCTCGTTGAGAGATTgaggagggggaaaaaagaagTGTGAACTTCTGGGGATGATTTTTGCGTTTGTGGTTTTATCAGTGGGGATGGCTTAGGCTAAGAGTGATTGACCTGGATGAAGCAGTACAGGACTCAGCGGTCAGATCTGTCCGGGCCCAACCAGCAGTACGCAGCTAAGTGGAGAACACATTAATGAAACATGCTAATGACGAGCAAGTTTACAGCACATTCTGAGGataaacatggaattatttcaGAAAACTACATTCTTTGTTATGCGCAAGTTGTTGGACTGTGCAGAGCATATAAGTTGTTCGAGAAATATCAGGTGTATGAACCCATGATTGCAGCGCAgatggaaaaatgaaaataaaaacaaaacttaaaacgcAATATGCGTAGGAGGGATAAATAAGATTTGGAGTTGGGAGTAAAGGTGAATGTTTTCACAgaaatcaaaaatgttatttttgtacAATATCACTTAgactactgtaaaaaaatatcatttgcTTGTACTCAGTTTTTAAGTGGGAAGGTAAATGCAACTGAAGTCCTAGAACATAGAAATGTACTTTTAAACTATCAATAAAGCTGGAGGAAGAAGGGGAGTGAGACTAAAGCTTA
>XM_022682402.1
TGCGCAAACCGCGTGTGGCGCAGCGCGGAGAGGAGGAACCGAACATAAACAGCGACGACTCACGTAGCCGAGGTGAGTGGCTTTAAAAGGACGAAAACGGCAAAAATACACGGTGCGCGGCCCCGCGGCCCGGTCCGAGGGGGTCGGCGCTCTGGTAGAACAGCCGAGAAACGGCGAACAGAGCCGAACCAAGCCGCTGTGGCGGAATGTGTGGAGGAGGTAAACATGTGAACGCACGTTTTCGGCCTACCGTGCGTGTTTTTTCAGGCTCTGCGCGGGAAAAGGGAGACGATGGCTGAGCTGATACGGAGCTAAAATGTCTCCGTGGGCTTTTTAATAATCCTGAGGGAGTGGGGCTGAGGGAGGAGGCGGGTTTCCGAGGAATAGCTTTAACACGACGCCGCGGGACTGGCAGTGTTTACGGGGGTCCGTGGGTGGAACTCTGCGGGGAACCGACCGAAACCAACCTGAACGCGTTTATAGGTTGAAAGGATGAGCAGCAACGAGTGCTTTGGGTGCGGCCGCACTGGCCACTGGATCAAGAACTGTCCAAATGCTGGACGGGGACGTGGCAAAGGTCGCGGAAGAGGAAAAGGTGAGAGCTTCTCATATTACTTGCTGTTTATAGGCTTGCGTATTGATATTTCTGCACTGTTTAGACGATTATCACTAAATTTCCATTTTTTGGTTCTAGATCTTTTCTGTTACCGCTGTGGAGAGCCTGGCCATGTTGCTCGAGACTGTGAAAGAACTGAGGATGCCTGCTACAACTGTGGCAGGGGAGGCCACATCTCCAGAGACTGCAAGGAGCCCAAAAAGGAGAGGGAGCAGGTGTGCTACAACTGTGGCAAGGCCGGCCATGTGGCTCGCGACTGTGACCACGCCAATGAGCAGAAGTGTTACTCTTGTGGAGGATTTGGACACATTCAGAAAGGCTGTGAAAAAGTCAAGTGCTACAGGTGTGGCGAGATCGGCCACGTTGCTGTGCAGTGCAGTAAGGCGAGCGAAGTCAACTGCTACAACTGCGGCAAATCCGGTCACCTGGCAAAAGAATGCACCATCGAGGCCACTGCTTAATCCCATTTCCTTGGTTGCCCCTCCTTTTTTCTGATTGATGGTTGTATTATTTTCTCTGAATCCTCTTCACTGGCCAAAGGTTGGCAGATAGAGGCTAGTCCCAGGCCAGTGAGCTCTTGACACGTAAAAGGAGGAAAGGggtggaaaaagaaaacaaaatttcCACTTTCTtgcatttaatacaaaaaaagtttatgtTTAGTTTGGTAGAGGTGTTATGTATAATGCTTTGTTAAAGAACCCCCTTTCCATGCCACTGGTTAACAGGGATGAATGAGTTTAGTGGAAAGAAATGATGTCGATTCAGTCTCTCCGAGCTCGTCGAACGAAGCCTCGTTGAGAGATTgaggagggggaaaaaagaagTGTGAACTTCTGGGGATGATTTTTGCGTTTGTGGTTTTATCAGTGGGGATGGCTTAGGCTAAGAGTGATTGACCTGGATGAAGCAGTACAGGACTCAGCGGTCAGATCTGTCCGGGCCCAACCAGCAGTACGCAGCTAAGTGGAGAACACATTAATGAAACATGCTAATGACGAGCAAGTTTACAGCACATTCTGAGGataaacatggaattatttcaGAAAACTACATTCTTTGTTATGCGCAAGTTGTTGGACTGTGCAGAGCATATAAGTTGTTCGAGAAATATCAGGTGTATGAACCCATGATTGCAGCGCAgatggaaaaatgaaaataaaaacaaaacttaaaacgcAATATGCGTAGGAGGGATAAATAAGATTTGGAGTTGGGAGTAAAGGTGAATGTTTTCACAgaaatcaaaaatgttatttttgtacAATATCACTTAgactactgtaaaaaaatatcatttgcTTGTACTCAGTTTTTAAGTGGGAAGGTAAATGCAACTGAAGTCCTAGAACATAGAAATGTACTTTTAAACTATCAATAAAGCTGGAGGAAGAAGGGGAGTGAGACTAAAGCTTA

Function

symbol description
cnbpb Predicted to enable mRNA binding activity; single-stranded RNA binding activity; and translation regulator activity. Involved in positive regulation of innate immune response. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in myotonic dystrophy type 2. Orthologous to several human genes including CNBP (CCHC-type zinc finger nucleic acid binding protein).
cnbp Enables G-quadruplex DNA binding activity. Involved in G-quadruplex DNA formation and negative regulation of transcription by RNA polymerase II. Predicted to be located in cytosol; endoplasmic reticulum; and nucleus. Predicted to be active in cytoplasm. Implicated in myotonic dystrophy type 2.

NR:

description
PREDICTED: cellular nucleic acid-binding protein-like, partial

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09250 CNBP; cellular nucleic acid-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229621.3 False 1564 mRNA 0.46 5 12994479 12998610
XM_022682401.1 False 1663 mRNA 0.46 4 12994479 12998610
XM_022682402.1 True 2032 mRNA 0.48 4 12994479 12998575

Neighbor

gene id symbol gene type direction distance location
LOC111195380 NA coding downstream 4211 12983421 ~ 12990268 (-)
LOC103027102 isy1,LOC108431508,LOC108254962,LOC107700632 coding downstream 13662 12973940 ~ 12980817 (-)
LOC103034476 zgc:77375,LOC108431553,LOC108254961,LOC107700631,LOC107758152 coding downstream 22168 12952510 ~ 12972311 (-)
nuf2 nuf2 coding downstream 54019 12926056 ~ 12940460 (-)
shisa5 NA coding downstream 71499 12905330 ~ 12922980 (-)
mkrn2 mkrn2 coding upstream 34966 13033576 ~ 13047546 (-)
pparg pparg coding upstream 86419 13085029 ~ 13132096 (-)
LOC103031721 syn2,syn2b,LOC107758022 coding upstream 149586 13148196 ~ 13282473 (-)
LOC103033524 mmp19,LOC103033524,LOC108431507,LOC107737372,LOC107683650 coding upstream 386315 13384925 ~ 13395895 (-)
LOC111195441 LOC106570611,LOC106595375,LOC106565963 coding upstream 461125 13459735 ~ 13465405 (-)
G189385 NA non-coding downstream 91319 12902937 ~ 12903160 (-)
G189381 NA non-coding downstream 97871 12894863 ~ 12896608 (-)
G189380 NA non-coding downstream 103210 12890834 ~ 12891269 (-)
G189376 NA non-coding downstream 114135 12879945 ~ 12880344 (-)
G189352 NA non-coding downstream 225768 12768010 ~ 12768711 (-)
G189402 NA non-coding upstream 31560 13030170 ~ 13032240 (-)
G189404 NA non-coding upstream 51949 13050559 ~ 13053733 (-)
G189417 timp4 non-coding upstream 191168 13189778 ~ 13194807 (-)
G189418 NA non-coding upstream 208430 13207040 ~ 13210220 (-)
G189419 NA non-coding upstream 212178 13210788 ~ 13211185 (-)
LOC111195455 NA other downstream 280447 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other downstream 374913 12614912 ~ 12619566 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 598947 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 815869 12160542 ~ 12178610 (-)
G189055 NA other downstream 950186 12043913 ~ 12044293 (-)
tsen2 NA other upstream 64189 13062799 ~ 13076742 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 2320033 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 2410597 15409207 ~ 15466584 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 3347091 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 3571013 16569623 ~ 16599317 (-)

Expression


Co-expression Network