LOC103031721 (syn2,syn2b,LOC107758022)


Basic Information

Item Value
gene id LOC103031721
gene name syn2,syn2b,LOC107758022
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 13148196 ~ 13282473 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229637.3
gggagagtggtagagagagagagagcaaggaggCTGAGGCAGAGTATGAGCATCTCTGCTTGGCTTTCAAGCTGTCAGAGcaccgagagagagaggacagaaacagagagagagagagagagagagagagagagagagagaggaggggagaTCGAGCAGCAGCATCAACAGCATCACGCCCAAAGCACAGGTTTTGACAGGCAGGACTCCGCTTGCTGCCTCGCTTCAAATTAAACACAGATTTGCTTCCTGTGCAACCTTGAGCAATTTCTGCAAGGTTTAACCTTCACCAACCGCAGCCATGAACTTCCTCCGCCGCCGCCTCTCCGACAGCAGCTTCATCGCCAACCTTCCCAACGGCTACATGACGGATCTCCAGAGGCCTgatccacctccacctcctcctcccagTGCTGCCTCCTCCCAGGTCCCTGCCTCTGGTCCAGCTACAGCAGCCCCAGGCACTGCCACAGCTGTCCCCACTGCCCCCACTGCCTCTGCTGCCACCGCTGCCTCCGCTTCCACCAAGTCCCCCAGCGCCTCTCCGGCTCCTGATCGCCGACCCCAGCCTGCCCAGTCCACCAGCTCGGGCTTCTTCAGCTCCATCACCAATGTGGTCAAGCAGACGGCCGCATCCGCTGGACTGGTGGAGCAGAGTCCTGCACAGATGTCCAAGAAGTTCAAGATTCTCCTGGTCATCGATGAGCCACAGCATGAATGGGCCAAGGTGTTTCGCGGGAAGAAGGTCCAGGGAGATTTTGATATCCGTGTTGAGCAGGCGGAATTCTCTGAAATCAACCTCGTGGCTCACGCCAACGGATCCTGCAGTGTGGATATGCAGGTGATCAGGAATGGGACTAAAGTTGTACGGTCCTTCAAGCCTGACTTCGTGTTGGTCCGACAGCACGCGTACAGCATGACCCAGAACGAGGACTTCCGCAACATGATCATCGGACTGCAATATGCTGGAATTCCCAGTGTGAACTCACTGGAGTCTATCTACAACCTCTGTGATAAGCCATGGGCGTTTGCTCAACTGATAAGCACCTATAAGAAACTGGGACCTGAGAAATTCCCTCTTATCGAGCAAACGTTCTACCCAAACTACAGGGACATGATTTCTATGCCTACATTCCCGGTGGTGGTGAAGATTGGACACGCTCATTCTGGCATGGGAAAGGTTAAAATTGACAATCACAACGACTTCCAAGACATTGCCAGTGTGGTTGCCATCACTCAGACTTACACCACTACAGAACCTTTTATCGACGCCAAGTACGACATCAGGGTGCAGAAGATCGGTAGCGACTACAAAGCATATATGAGAACATCAATTTCTGGCAACTGGAAGTCGAACACCGGTTCTGCAATGCTGGAGCAAGTAGCCATGACTGAAAAGTATAAGCTGTGGGTGGACGTCTGCTCAGAGATCTTCGGAGGGCTGGAAATCTGTGCAGTTAAAGCCATACATGGGAAGGATGGGAAAGATTACATCACTGAGGTGGTGGGTTCCTCCATGCAGCTGATAGGAGAGCACCAGGCAGAGGACAGGCAGCTGATAGCTGAAGTGGTCCTGGCCAAGATGAACCAAACGGCAGCTCGGGCACCAGCTCGCCCTTCACAAAGACCCACAACTGCTGTCCAGCAGCCTCAGAGCTCTGCCTTAAAGGAAGGCCCACCTGACCACAGCAGGACTCCGCCCCAGCGTGTCCCTCCTCAAGGGGCCTCAGTGAAACCCCAAGAGTCCCATCCTAAGAGTCAAGAACCTCCACCTGAGCCAGCCCCTAGTGCTCCTGCCCCGGAACCCGTGCCAAAGGCAGCTCCCACCCCAACTCCACCTCCCACAACACAGCAGCCCAAGCCCCAAGGTCAGGCAGCACCCGTGCCAGCTCCAGGAAAGCCAACAGAACTGCCCCCGAAACCACAGCCTCCAAAGCCACTTCCCCCAAAGCCTGTGCCTCCAGTCCGGCGAAACTCCAAGCCTCAGATCCAACCAAAGCCCCAGACCCCACCTCCTGCCAAGGCCCATCCTAAGGCCCAGCCTGAAGGCGCAGGTCAGAGTCCTTCCCAGACAGATTCAGCCCCCACGCAGGTACAGTCCCCAGCCAAAACCCCCGCCAAGCCCCAGTCTCCTAACAAACCCCAGTCCCCAGCCAAACCCCAGGTCCAGCCCAAGCCTGTGCCTAAAGAGCAACCCCAGGTTGAAGCTCCACCTCAAAGAGCAGCTTCAACCGACACGGCACCGTCGGCTTCTGCGCCGTCACCTGCCCCTGCGCCATCACCTGCCCCTGGACCTGCCACAGCTCCGGCCCAGGCTCCTGTCGAGGAACAGCCAGCACCTCAGCAGAAGTCTTCACATCCATTCCTAAACAAATCCCAGTCTCTGACCAATGCCTTCAATGCCTTCGGGGAGACCTTCCGCTCCAGCAATGAGGACGAAGCCAAGGCAGAGACTATCCGAAACTTGAGGAAGTCTTTCGCCAGCCTCTTCTCTGACTAGTGGCTGTTCCAACTTACGGTTCCAAGCTTGGCCGCGGACTTGATCGACGGAAGTGTGTCCTGGTCTGAGGTTAACTCCATGTAGCTGTATACATTGTACCCTCCTCCCAACTCTGCTGTAAATGTCTGAATGTCGATTCGCAAGTGGAGAGTGCCGTATGGTGATTGTCCCCGGCAAAGGTGTTGGTGTTTACATGTTTGATTTGCACTGGTCTGAAACATTGCCATCTGTACATGGAGGACAAGGAGGCGTGTCAGTGATGCATGGTTCTGAGGGGATTTCTGGATTCGGATTTTGGAGGGGGTCGAAAGCGAGCGATCCTGATGGTTGCCGAGTGCTGAGTTGTTCATTAACCCCTTGATGTTGTAGCCTTATCGTGGACGTGTGTTTAATTTACCCAAAGAGAAATATCTGTGAGTAGTCTCCCTCGTCTCTCCAGCGCAGTGTGTATATCTAGACGATCTGTTGTTATTAGCCGACGAGACATTAGTTAAACTTTACCTCGATCAGACCAAGCACTTTCCTTTCCGAGATTCCTACAGTATGCAGTGCTTGGACTGGTCCGTTTCAATGCAGTAGTGGCGTTTCAGTGGAATGCCTGGTGTTCTGTGGTGTGGCTTGGGTCCGGCACATAACCGACATAACGTCAAGTTAATCATGAGTGCCATGTAGTATCCTTACATATTGTATATCGTACTGTACGTTCAGCATCTCAGGAGTTTCAGTTCTAAgtaaatcatttatttctgGCGTCATATTGTTCACGTTGTGTTTCCTTCGTTCACAGTAGAACTGCTTTGCATGACCCGTGACGgttgttttttctgtacagGTCTCAATAAATATGTGGCACTCCATTCCACTAATTTAC

Function

symbol description
syn2b Predicted to enable ATP binding activity. Predicted to be involved in neurotransmitter secretion. Predicted to be located in synaptic vesicle. Predicted to be active in synaptic vesicle membrane. Is expressed in DEL; nervous system; spinal cord neural tube; and yolk syncytial layer. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human SYN2 (synapsin II).
syn2 Predicted to enable ATP binding activity. Predicted to be involved in neurotransmitter secretion and synaptic vesicle cycle. Predicted to be located in synapse. Predicted to be part of SNARE complex. Predicted to be active in Schaffer collateral - CA1 synapse; glutamatergic synapse; and synaptic vesicle membrane. Predicted to be extrinsic component of synaptic vesicle membrane. Implicated in schizophrenia.

NR:

description
PREDICTED: synapsin-2 isoform X1

GO:

id name namespace
GO:0007269 neurotransmitter secretion biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0005524 ATP binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K19941 SYN; synapsin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229637.3 True 3371 mRNA 0.54 13 13148196 13282473

Neighbor

gene id symbol gene type direction distance location
pparg pparg coding downstream 16100 13085029 ~ 13132096 (-)
mkrn2 mkrn2 coding downstream 100650 13033576 ~ 13047546 (-)
LOC103027392 cnbp,cnbpb,LOC106583855,LOC107742030,LOC108431552,LOC106566283,LOC108254964,LOC107742027,LOC107675970 coding downstream 149586 12994479 ~ 12998610 (-)
LOC111195380 NA coding downstream 157928 12983421 ~ 12990268 (-)
LOC103027102 isy1,LOC108431508,LOC108254962,LOC107700632 coding downstream 167379 12973940 ~ 12980817 (-)
LOC103033524 mmp19,LOC103033524,LOC108431507,LOC107737372,LOC107683650 coding upstream 102452 13384925 ~ 13395895 (-)
LOC111195441 LOC106570611,LOC106595375,LOC106565963 coding upstream 177262 13459735 ~ 13465405 (-)
gdf11 gdf11,LOC108431504,LOC107385665,LOC101480554,LOC103359380 coding upstream 211103 13493576 ~ 13533622 (-)
LOC103026383 NA coding upstream 274549 13557022 ~ 13572611 (-)
LOC111195442 NA coding upstream 968991 14251464 ~ 14255472 (-)
G189404 NA non-coding downstream 94463 13050559 ~ 13053733 (-)
G189402 NA non-coding downstream 115956 13030170 ~ 13032240 (-)
G189385 NA non-coding downstream 245036 12902937 ~ 12903160 (-)
G189381 NA non-coding downstream 251588 12894863 ~ 12896608 (-)
G189380 NA non-coding downstream 256927 12890834 ~ 12891269 (-)
G189448 NA non-coding upstream 33236 13315709 ~ 13315945 (-)
G189455 timeless non-coding upstream 50987 13333460 ~ 13334910 (-)
G189490 NA non-coding upstream 165768 13448241 ~ 13448525 (-)
G189494 cdk2,LOC107570445,LOC107683630,LOC107562245 non-coding upstream 169681 13452154 ~ 13456427 (-)
G189509 sarnp non-coding upstream 190152 13472625 ~ 13485558 (-)
tsen2 NA other downstream 71454 13062799 ~ 13076742 (-)
LOC111195455 NA other downstream 434164 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other downstream 528630 12614912 ~ 12619566 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 752664 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 969586 12160542 ~ 12178610 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 2036170 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 2126734 15409207 ~ 15466584 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 3063228 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 3287150 16569623 ~ 16599317 (-)
cass4 NA other upstream 3551377 16833850 ~ 16869461 (-)

Expression


Co-expression Network