LOC103033524 (mmp19,LOC103033524,LOC108431507,LOC107737372,LOC107683650)


Basic Information

Item Value
gene id LOC103033524
gene name mmp19,LOC103033524,LOC108431507,LOC107737372,LOC107683650
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 13384925 ~ 13395895 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229643.3
GTAATTAAGGTCAAACTGGTCATAATGGTAGCTGTTCTTAAGTTTCTGCAGAAACTTTCTCAGCAGAGGAGTTCCTCCTGCAGCAGGCAGGAGTTATTGTGAGTGGTGTGGAGGAGTGAATGGGGAGTTTCCTGTATCGCTGGGCAGATGTTCCAGTTGTGGAGGAGTCTGAAGCTCTCAGTCATCAGAAATGCATCACTTCAGCTCAGCAGGACGACCAGTGACTCACACCGTTCCTGACCCCAGGCTATAAACCCCACTCTGGGACACGCTAGAGCTGAGCTGCAGAGCTGCAGATCCAACAGGGTTGGTCTGAATCCACCCAGAGCACAAACTCTCAACTCCTCACTCTCAACTCCTCACTCTCAACTCCTGAGCTGATTAAACACTGTTCTAAATCTCAGAAACTACAGCTGGAACATGGAGAAGCTGCTGCTGTGGACGACATTCCTCACTGCTGCTCTGAGTGCCGTGTGCTCCACTGTGCTTCAGAGAAGAATGGAGTTCACTGAAGCTATGAATTATCTAAAACAGTTTGGGTATCTGGACACTCCACTGGATCTGGAGGTGCAAGCACACTGGAGCGATGAAGAAATCAAAGAAGCTCTCAGTCTGTTTCAGAGGGTGTCAGAGCTGCCGATCACTGGACAGATTGATGAAGCTACTATTGGGCAGATGAGGCAGCCTCGCTGTGGGGTGGAAGACCCTTTCAACCAAAAGTCCATGAGATACAGGACGTTCGGTGGAgtttggaggaggaggagcctcACTTATCGCATTTATAATTACACCCCTGATATGGGAAAGGCAGCCACCCAGCGGGCCATCCGTTCTGCCTTTAAGTACTGGAGTGACGTCACTCCCCTGAGCTTTAAGGAGATCGACTACGGCCGTGCAGACATCAGAATCTCATTCCATACGAGAGAAGGCTGTCCCTCACCTTTTGATGGGCCAGGTCATGTGCTCGCTCATGCAGAAGCCCCTACCTCAGGGATTGTTCACTTTGATGAAGATGAGTTCTGGACAGAGGGCAAATACTACGGCTCCAACCTACGCATCGTGGCAGCCCATGAGATAGGCCACGCCCTGGGTCTCGGCCATTCCCAGTATAAGAGCGCTCTGATGGCTGCACACTACACTGGATACAAGGCCAACTTCAGACTGCACCCGGATGACATCAGAGGAATCCAGGCGTTATATGGTAAAAGAATCTCGGGTACGACCACAGATGAAAATATTTTCACCTCACACCCAACAACCAACTCGCCTTTTCCCAGAAGAGAGGTTCCAGACCCATGCGATGCCAAACTGGACGCCATAATGCTGGGTCCCTGGAGTAAGACCTTTGCCTTCAGTGGAAACTACGTCTGGACCATCACAGATTTGGGACACAACCCTCCCATTAAGATCAACCAGCTGTGGAAAGGGCTGCCCGGGAACCTGAATGCAGCTGTGTACTCTCAGAGAACCAATAAAACCTACTTTCTAAAAGGTGACAAAGTATGGCGGTATACAAACTTCCAGCTTGACCTGGGATACCCCAAAGAGCTGAGGAGGATCCCAGCAAACATCGATGCAGCTCTGTATTATGAGAAGAACAAGAAAATATTCTTTTTAAAGGGCTCTGGTTACTGGCAGTGGGATGAAATGGCCTACAATGACCTCAGCATCTACCCCAAACCCATCTCCCGCCTTTTCACCGGAGCCCCGTCCAGACCGGACGCAGCGCTCACATGGACCAATGGAAAGGTCTACTTCTTCAAGGGTGACAAGTACTGGCGCATGAGTGACCAGCTGATTGTTGAACCCGGTTACCCCCTCAGCAAGCGAGAGCGCTGGATGAGATGCAACCACTGAGCCACTAGAGTGCAGCAGAGAGCTGAGAACTGCAGTGAGCTCAGGAGGGCCTTCAGTGGCTGGATGACTGACTGTGTGAGGGACATTGTTTAGCAGATGTTCAGCAAATCTTCTGGGGTTTAGAAACGCAACCAACATGATGATTAGAGCATTCATATTGCGGCGTTAGGGAGCTGAGAATGGACAAAGCTTCAGGTTCTCTTTTGAGAAGAGTACCTGTGCTCGGCTCCTGGGGTCTCAGCTCAGTGGTGTTATTTACATGGTCACTAATTTCAGGGAACAAACTTCACAGATTCAGTTTTGTTGATGCACTGAGAAAGAGTTGAAAACACTTGAGAACGTTCTCGATTTCtgtataataatgtgtttattgtagCAAAACTCATGTCAGCACCAAAACCTGCCTATGTAAAGATGATTAGGCTGATAGATGCTCATCCCAGagcttttctttatatttcagAGCAAGGAGCGTCTCACTGGGTTTAGTTTTACTCAGAAATGCAGAGAAGCAGGGCATTACAGAAGAGtttgagttattattattattaggttcTTCTGAACCATGAGGAATATCTCGTAATAACCACATTATAGTTGAAACCACCCTAGAAACCACCCTAGCAACTACCTGGTATAGTACATGACCATGCGAGGTCTGTATGCATGGTAGCTTTTACCTGGTATATCAAAGTAATCACCTAGCCAACATTAGCTAACTTTATTGCCTTAGCAAGTAGCTGGCGTTCCAAAGCAAACACCAGCAATACTTTAGCAAATGCttttgcaaccacctagaacaCCTGGTATGCCAGAGCTGCACTGGATCACCTCAGGAACACCATATCACCCACTTAAAatcatctttctttcttattatatTTCAGAATCCACCTAAAAGATAATAGCAACAAAATAGCAACCACGAGTTTTCTCTACGAGTTTTCCTTGTGATCTCAGGATaagttgataaaaaaatattttatataaaattttgaGATAACgggttttaattattattaactcACAATCTGTCTGAATATCCACAGAAACTTGtgtaaagaaacattttaaatttgtaaaatgtttttgctGTTGCAGGAGGTTTTGGTGATGGCTTCAAAACTCAAATGAagctttattgtttttaattctcTATATTATTCTCTTTTCATTATCTcagaattataaaataaaccacacccTATAATTAATCATTTCAGGTTTGATTTGatacatatgtatgtataaatttgTAGaagatgtttacatttttaacaactaataaattttacacaaaagaa

Function

symbol description
mmp19 Predicted to enable metalloendopeptidase activity and zinc ion binding activity. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular matrix. Orthologous to human MMP19 (matrix metallopeptidase 19).

NR:

description
matrix metalloproteinase-19

GO: NA

KEGG:

id description
K07998 MMP19, MMP18; matrix metalloproteinase-19 (RASI)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229643.3 True 3161 mRNA 0.45 9 13384925 13395895

Neighbor

gene id symbol gene type direction distance location
LOC103031721 syn2,syn2b,LOC107758022 coding downstream 102452 13148196 ~ 13282473 (-)
pparg pparg coding downstream 252829 13085029 ~ 13132096 (-)
mkrn2 mkrn2 coding downstream 337379 13033576 ~ 13047546 (-)
LOC103027392 cnbp,cnbpb,LOC106583855,LOC107742030,LOC108431552,LOC106566283,LOC108254964,LOC107742027,LOC107675970 coding downstream 386315 12994479 ~ 12998610 (-)
LOC111195380 NA coding downstream 394657 12983421 ~ 12990268 (-)
LOC111195441 LOC106570611,LOC106595375,LOC106565963 coding upstream 63840 13459735 ~ 13465405 (-)
gdf11 gdf11,LOC108431504,LOC107385665,LOC101480554,LOC103359380 coding upstream 97681 13493576 ~ 13533622 (-)
LOC103026383 NA coding upstream 161127 13557022 ~ 13572611 (-)
LOC111195442 NA coding upstream 855569 14251464 ~ 14255472 (-)
vgll4 vgll4,LOC107697562,LOC107750033 coding upstream 1153251 14549146 ~ 14609624 (-)
G189455 timeless non-coding downstream 50015 13333460 ~ 13334910 (-)
G189448 NA non-coding downstream 68980 13315709 ~ 13315945 (-)
G189422 NA non-coding downstream 140941 13243581 ~ 13243984 (-)
G189419 NA non-coding downstream 173740 13210788 ~ 13211185 (-)
G189418 NA non-coding downstream 174705 13207040 ~ 13210220 (-)
G189490 NA non-coding upstream 52346 13448241 ~ 13448525 (-)
G189494 cdk2,LOC107570445,LOC107683630,LOC107562245 non-coding upstream 56259 13452154 ~ 13456427 (-)
G189509 sarnp non-coding upstream 76730 13472625 ~ 13485558 (-)
G189522 NA non-coding upstream 150635 13546530 ~ 13546899 (-)
G189600 NA non-coding upstream 545291 13941186 ~ 13943399 (-)
tsen2 NA other downstream 308183 13062799 ~ 13076742 (-)
LOC111195455 NA other downstream 670893 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other downstream 765359 12614912 ~ 12619566 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 989393 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 1206315 12160542 ~ 12178610 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 1922748 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 2013312 15409207 ~ 15466584 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 2949806 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 3173728 16569623 ~ 16599317 (-)
cass4 NA other upstream 3437955 16833850 ~ 16869461 (-)

Expression


Co-expression Network