klhdc7a (LOC108438577)


Basic Information

Item Value
gene id klhdc7a
gene name LOC108438577
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 9836099 ~ 9839322 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007230592.3
gctgtCATTTTGCTGCTGTCCTCATCAGCGACTCCGCTGCCCGGGGTGTACTAGAGAAAGCACCCTGAGTAAACACCCAATCGCCAGCTGACCATCAAACCTGCTAGACCAGAAATGCCAATAGCGGACTTGCTGGGAGTGCGCTTTGACATGCAGCTCCTGGGCAAGCTGACTCTGTCTGTGGCTGCGATTCTGCTCATCTCCTGGGCTTACAGATTCTACAGCTCAAGGGCTCAAGGCCAAACTCAGACCATCGGCAGAACCCCCCTGCCTAGGGGCACTCAGACAGGCGCTGAAACCTGCAGCAACTGCAAAACGGTGTTACAACCCCAGAAGAAAACTGCGAAAGAGGAGGCTAATGGAGAGAGCCAGTCTAGGCAATCCTCTGTGGATTTGgtaaaagacatttttaaaccCGAGGAAAGTGATGCAGCACATCCCTGTGAAAATGAAGAGTCTAAATCTGAAGTCTTTGCATTTAAAACCATGCAATATTCTACATCTGTAAGAAGTGACATCCAGGATTTTTGCCAGGATGCTGTTAAAGAAACAAGTGAGTCAAAAGACTGCAAATCAGAATTAACTTTACTTCTACCAGACGAAGCTGGCAAATCCTCAACAACAGTGAACAACAGTTCAACAGGGCGTCGTTCACCATGCCTGCTAAGGAAAGTGGATGGTGGCATTGAGGTTGGCAGAGAGCTCAGGCAGGACTTGGGTCATTTGGGCAACTTCTCCAGTTTCCAATCCAAGGCAGAGATCAAAATGGAGAATGCTGACCTGGTGCTGGAGGGAACAGGTAACCAGAATACTGGAGTACGTGGAAAGATTTACGATTATTATGTCGAGACATCCTCGCATTCTATTTCAGATTTGAGCCCCACTCACTCTCTAAGCCCAACTTTTGGACCATATGAAACTGGCAACTTGTTTGATTCAAAGCTGTCCGAACTGTCTGGTATCATGGATAAACCCCGAAGTCCAAGCCCCCTCCCTTCTGCTTTAATAATCAGAGATCTGGAATTATCTCACGATTCAGATGGGGAGCCTCTGTCTCCAATGAAATCTGAGCCAATAAAACTTCTTAGACAAGGACTAATTCGCAAGGACAGTTACCTAGCTGCTGCAGTAGACTCTGAACTGCAGATCCCATTTCCTCCTCCAGTGACTTCAACACCTTGCAGTCACTCACCGACAGTTCCTAGTGAAATGTTGCAAAACTATTCTGActcaaataataaagaaatgcaACACATCAATAGAGCATCTTTTAAAGAACCAGGCACCCAAGTACAAACAGTTGCTGGGGCCAAGTTTCTCAACTTTCCTCCTCAGGAAAATGTGGGATGTTCAGAATTAGAGAGTCTAAAAGGAAAGCTTGATTTGGGCAACTGCCTAGAAGCTCTGATCCTGGCCAAGAAATACGGACACAGTACTCTCCAGAAGTCTGCTCTCAAAGTAATGTCCGACAATTACTTTCAGGTCCTGCGAGATCCAGCCCTGTATGGTAGACTCAAAGCAGGTGAGCGAGATCAGATTCAGAGGCAGCGAATGAGAGGCAGAAGATGCTTGATGGTGGCTGACATGGAGTCTCCAGAGTGGAGTAGACTTCCATCCCAGTCTACAATGTCCGAAGCCAAAAAAGCATCTAGTGGACTATATTACTATGATGACTACAAAGACACCTGGCATTATCAGTGCCAAATCCCTCAGGAAGTCCTATCTAGAGGCTGTGCCATGTGCACCATGGACAACTACCTGTTTGTTGCTGTAGGCTTTCAAGGAAACAGTCTAGCAGTGCCTTCGAGGAAGGTCTTTTGTTATAATCCCATTACATCCATTTGGAGTGAAATCTGTCCGATGAACGAGGCCAGGCCTCACTGTAAGCTTGTTACTCTCCAGGACCATGTCTATGCCATTGGAGGGGAGTGTCTGTCAACAGTTGAGCGATATGACCCCAGGAGCAACAGATGGAGCTTTGTCGCACCACTGCCCAATGAGACTTTTGCAGTTGCCCATCGAGCCACAGCTTGCAATGGGGAGTTGTTTGTCTCGGGAGGTACGTTGAAGTACACGCTGTTACGCTACAACCCCAAGACTGATGTATGGAGGCAGAGTTTGATAGTGGGAAGCAAAGAGAGGACTACAGAAATGGTGGCGGTGCGGAACTTTCTTTACCGGTTTGACGTGAGCCCCACCATGGGCATCAGCGTGTATCGATACCATGCTGTGGCCAGGCTTTGGTACGAGTGCTGCTCCAAGCGAATGCCTCACTGCCCTGCCTTTCAGTGCATCGCCATGGACGACGTTATCTACTGCGTCAGTCGACAGTTTACCATGAGATTCTTAGCAGACGAGATATCGCCAGGCTTCGTGGCCGAAGATTTAAAGGTTCTTTCGGCCGCCAAGGGCATTCTGTTCCCTTTTGTCCTCGCTCTGCCAGATAAAAGCACTATTCAAACCAGTGTATGAGCAAGGTCAGCTCACGTGAGCGAAAGACTGGTGAGAGTGGTAAGAGAGAACACTCAATGTTCATTGCTGAAGACCAGATTAAGCCCTTTGATATGTTGCTGGAATGCATAGTCGTCTTAATCAGTGGCAGTAGAAGTGAAATATCAAGGCTATTAAAGCCAGTAATTGTAAAGCTAGATCAGATTCATTGTGCACTCTCTGCTCGATAAATTTGCGGCTCCAATGAGAGCTGCTTGTTATTAGGGTTTTCCGTTCACTCTTGAGTCTAAGTAAACTCCTAAATCTAGTTAATGCTTGAGTGTTCTGGCTTTAAGTGTTTTGCTCAAATATACTGCCCTGGAACTCTATAAGCAAAACGTCAGCCAATCGATATGTAGAGCAGGGCAATGCTGCAATTACTGGAGTTGCTGTAATGAATAACTCAAATCCTTGTCATTTCTAGAATTTATGAAGGTTGGATAAAAATATGCATGGCATGCTTGATTTTACTCTTGTTTGGGAATTGGCACCCATTAATTCTGGATAATAAATTATCTTCACCCATGTCCTTTTGTTGAAAGCCAATACTGTCTGTAAAATGAGCACACCATAATGTAagagtttgtaagtttgtactGTATAGTTTTAcctctaaatctaatataagTCATAACTTCACATATATGCTGGGATTTCATAAGTTAATTGATCATGTTCTGTAAGTTAattgtaaataatacaaaatagtatagtagtatgtaTATACAATAAAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007230592.3 True 3224 mRNA 0.45 1 9836099 9839322

Neighbor

gene id symbol gene type direction distance location
LOC103024232 arhgef10la,LOC108438575,LOC107695083,LOC106565901 coding upstream 1102974 8438713 ~ 8733125 (+)
LOC103046266 chd5,LOC107555845,LOC107691315 coding upstream 1405037 8346072 ~ 8431062 (+)
LOC103047485 rpl22,LOC103047485,LOC108414460,LOC107737211,LOC107555851 coding upstream 1492752 8332182 ~ 8343347 (+)
LOC103024538 draxin,LOC108413332,LOC106565906 coding upstream 1591102 8193011 ~ 8244997 (+)
pank4 pank4,LOC107742899 coding upstream 1660929 8141553 ~ 8175170 (+)
dhrs3 dhrs3,LOC108439496,LOC107555693,LOC107685629,LOC107749419,LOC107703071,LOC103042050,LOC106582983 coding downstream 184670 10023992 ~ 10041141 (+)
LOC103039471 NA coding downstream 280711 10120033 ~ 10132709 (+)
LOC111195373 NA coding downstream 337808 10177130 ~ 10180602 (+)
LOC111195374 NA coding downstream 375037 10214359 ~ 10214948 (+)
LOC111195375 NA coding downstream 381220 10220542 ~ 10221130 (+)
G188316 NA non-coding upstream 5923 9829959 ~ 9830176 (+)
LOC111195368 NA non-coding upstream 81488 9752731 ~ 9754611 (+)
G188222 NA non-coding upstream 662439 9173390 ~ 9173660 (+)
G188221 NA non-coding upstream 699481 9136270 ~ 9136618 (+)
G188219 NA non-coding upstream 710565 9125176 ~ 9125534 (+)
G188349 NA non-coding downstream 79607 9918929 ~ 9981569 (+)
G188355 NA non-coding downstream 113326 9952648 ~ 9955821 (+)
G188356 NA non-coding downstream 114278 9953600 ~ 9956589 (+)
G188358 NA non-coding downstream 125207 9964529 ~ 9971293 (+)
G188366 NA non-coding downstream 226416 10065738 ~ 10066423 (+)
LOC103032765 igsf21,igsf21a,LOC108438574,LOC107749415,LOC107727841,LOC107685626 other upstream 16144 9283795 ~ 9819955 (+)
agtrap agtrap other upstream 1564387 8256796 ~ 8271712 (+)
LOC111195452 NA other upstream 1722857 8112003 ~ 8113242 (+)
trnaq-uug_4 NA other upstream 2643873 7192154 ~ 7192226 (+)
LOC103029365 NA other upstream 2737427 7077165 ~ 7098672 (+)
G188325 NA other downstream 14985 9854307 ~ 9856995 (+)
LOC111195371 NA other downstream 262433 10101755 ~ 10106530 (+)
G188624 NA other downstream 464038 10303360 ~ 10303665 (+)
G188771 NA other downstream 1008749 10848071 ~ 10852736 (+)
G188923 lrig1,LOC107557776,LOC107753782,LOC107600281 other downstream 1250406 11089728 ~ 11090047 (+)

Expression


Co-expression Network