LOC103033109 (LOC103033109,LOC108443914)


Basic Information

Item Value
gene id LOC103033109
gene name LOC103033109,LOC108443914
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 18903417 ~ 18920755 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007234451.3
gaacgGACCGAGTTTCCCACTGGCACTGAGAGTAACTGCAGCGGGCGCgcgcgtgtgagtgtgtgtgcgttctGCTTAATGCATCAGATCGTCATTTGGATTCCTCAGAGTAATCCAGATGTTGACGGATCGGGTGATCAGAGGGAAGGTTGTCCTCTTCTGACTGCAGCAGGAGAACCGAGAGAAAAGAACCCGTTACAGATCTGGATATGAGCAGCAGGACTGACCCTTTACCTTATTCGCATCATTGACTCCTCAGATTCCTAAACATGCAGACACAGAATGGCCAAGTGGGAGCTGATTGAACTGAAAGATTTAACCCCTAATGATGGGATTGAGCtagcgccccccagtggatcCACTGCAGTACTGCCGGCGTCCAAGCAGAAAGCTCCAGAGCCCTTCGCCGTGAGATTGGTGGGCGATGCTGTGAGTTTGGAGAATGCCCGCTGGGTCAATGGCAAACATGGAGAAGGCCACCACTTCCAGCCCTGCAGCTACACCCAGCTGACCTGGTGTGACCTGTGTGGAGAATTTATCTGGGGGCTGTACCAGCAGAGCCTAAGCTGCAGCCACTGCAGGTACACCTGTCATTTCCGCTGTCATCCCTTCATCCAGCTGGACTGCAGTTCACACAGTGAAGCAGCTGCTGAACAGCCAGACTACAGCGAGGACATCGAGACAGACACTAATGTGGATGATCCAGTCGACTGGAGAAAGCAGGAACTGTCCGTCAGCGAAATCCAGCAGAAAGTTAAAGAATACAATGCTCAGATCAACAGTAACCTCTATATGGTTCTGAATCGGGATGGGTCGTACACTGGTTTCATTAAGGTCCTGTTTAAGCTGTCCCGCCCTGTGTCCCTGCCACCCCCTCGGAGTCCCTCCCCCCCTGCCTCAGGGCCAGAGGGGGCGGTGCTTACCCGCAGGACGTCCTTCTACCTCCCCAGAGACGCTGCTAAACACCTGCACGtcagctctcacacacaggtCAGAGAGGTCATCACCGCCCTGCTCAACAAATTCACTGTGGTGGACAACCCGGCCAAATTCGCCCTGTTCGAGCGCAGCGAGCGCCACGGACAAGtgTATCTAAAGAAGCTGGGCGATGAAGAGTGTCCGCTGCAGCTGCGTCTGTGTGCAGGTCCCAGTGAGAAATCCCTGAGCTTTGTGTTGAAAGAGAACGAGACTGGAGAGGTCAATTGGGAAGCGTTCAGTCTGCCCGAGCTGAAGAACTTCATGCGGATCCtgcagaaagaggaggaggatcatGTGAGACAGATCATCCGGCGCTACTCACTGGCCCGAGAGAAGATGAGAGAAGCTCTGAAACATTTCAGCACACCTGGATGATCTTAATGCAGGAGAAAGGGGTTAAACTGGACGTTACCTCACTGCTGGACGAGACAGCAGCTATAGGGCTAAAGTTCAAATGAGAGCTGCCTGAAATCCAAAGAGCTGATGGAGGTTCAGAAGTGCTGAATGGGGTGAATTTAGAGGCAAAATAATAACCTATAACTACCTAGATCACCCACTGAGGAGACTCAGACAAACACTCCACACTTGTGATAGAATTGCTCCTTTAATGATTCAAGAAAACTGAAAGTGGAATAGTAGGATGGCAGTATATTACATTATCAGCTGTGAATTAATAGTTCCAATAGTAAAGTAAATGGTGGGGATTCTCAGAATGAGGGAGATGTTGCAATAATTTTAACACAGCTTTACAGGGAACAACGGGTCTGTCTCAGAAAGCAGGATTAGTTTAGTCAGCCAGACTTTAACCTTTATTCCTTCTTATAGCTTTCTCActtactgactcactcactcatgttTAGCAGGCTATAGATTCTTCACAGATTCTCCACACCACTAGATCTAATATACactatactgccaaaagtatctgctCCCCTTCTGTAAAGCTGCCATTTGTGAATACACAATAATGTTCTATTAGTGGCAATATATACTATACAtagtatttaaatgattttccacattgttaattaaatgttaacCACCATCATAAAAGATTTTGCTAAATTGGAACTTTGGCTGAGCTAATGGTTTATGAGACAGACTCCAGgtcagtttttaatttaatggtgTACACACTGGAAGTGCTGCCTGCTGTGAGTCACCTCACAGTTTTTCTGATGATTTTTGTACTGTAACTCAGCTCAGATTGAGCACAAATCATAttcaggaaggtgaagactggGAATAAACTTTCTGTAACAGTGACTTAATGACTTGTGTTTATAGTTTAAAGAATGCTTAATGAGAATTAAATCACTTATAAGTACAATAAGCACTTTCAACCTGCAGTGGATACGTAGTCATTATAAACATCTTAACTGTGATTCTGTTAAGCCTCACAcgtgtttttaaaatgtgagtAATTGTTTATCTAAACAAAATGTGACAATGtgcatttattaaattttttttggaagaaattaa
>XM_007234452.3
TTCCATACAGGTCTTTAAATGAAAAAGCTGTAACtgtttctgctgtaaaactgaaGTGTGTGGTGGGGGAGTGGAGCTCAGTGTGAGGGTAGTGTACAGTGTTATAATCATGCAGTGATGTAGTGATGGTAGTGGGTGTAATTAGATCTCTATAGAGATGATGGTGGTGGAGGGGCAGTAGTGCAGACAGCTGGTGAGAGGTAAAGCTAATTACactcagccacacacacacacacacacacacacacacaaaacaatgcATTATTCCACTGAAATTAGTAAATTATTGCAAAGTAAAAATAacttgtttattatatattttcttaaaattaaCCAGGTTTTTAAGAttagtttacattttacatttagaaCTTAAACAGCACTGCATAAGGTATTATCACGTGTACTTTATCAATATTTTTCATAAATAATCATAAGTTATTGTTTATGATAAGAAGTGGTGGGTCCTGCTGGAGTAATAAACCCTGTGATTGGGTGGGGGGCATGTGGGCAGGGTTTAATACAGAAGGGGAGGAGCTTGTATTAATCTGCAGTTGCTCTCAGCATATTATAGCTGTGGAAACAGTTGAAAGTGCAGTCCAGCCCGCAtcccggtgtgtgtgtgtgtgagtgtgtgtgtatgttagcgtgtgtgtgtgtgttagtgagtgtgtgagtgatgtCGTggagcagctccagcagtggaTACTGCAGCACTGATTCAGACTCAGAGCAGGAGCTCCAGCAGTTTTACACTGCTCACACTTCCACTTTCAGAAACAAACACACCCCAGCCGAGGATGATCCAGTCGACTGGAGAAAGCAGGAACTGTCCGTCAGCGAAATCCAGCAGAAAGTTAAAGAATACAATGCTCAGATCAACAGTAACCTCTATATGGTTCTGAATCGGGATGGGTCGTACACTGGTTTCATTAAGGTCCTGTTTAAGCTGTCCCGCCCTGTGTCCCTGCCACCCCCTCGGAGTCCCTCCCCCCCTGCCTCAGGGCCAGAGGGGGCGGTGCTTACCCGCAGGACGTCCTTCTACCTCCCCAGAGACGCTGCTAAACACCTGCACGtcagctctcacacacaggtCAGAGAGGTCATCACCGCCCTGCTCAACAAATTCACTGTGGTGGACAACCCGGCCAAATTCGCCCTGTTCGAGCGCAGCGAGCGCCACGGACAAGtgTATCTAAAGAAGCTGGGCGATGAAGAGTGTCCGCTGCAGCTGCGTCTGTGTGCAGGTCCCAGTGAGAAATCCCTGAGCTTTGTGTTGAAAGAGAACGAGACTGGAGAGGTCAATTGGGAAGCGTTCAGTCTGCCCGAGCTGAAGAACTTCATGCGGATCCtgcagaaagaggaggaggatcatGTGAGACAGATCATCCGGCGCTACTCACTGGCCCGAGAGAAGATGAGAGAAGCTCTGAAACATTTCAGCACACCTGGATGATCTTAATGCAGGAGAAAGGGGTTAAACTGGACGTTACCTCACTGCTGGACGAGACAGCAGCTATAGGGCTAAAGTTCAAATGAGAGCTGCCTGAAATCCAAAGAGCTGATGGAGGTTCAGAAGTGCTGAATGGGGTGAATTTAGAGGCAAAATAATAACCTATAACTACCTAGATCACCCACTGAGGAGACTCAGACAAACACTCCACACTTGTGATAGAATTGCTCCTTTAATGATTCAAGAAAACTGAAAGTGGAATAGTAGGATGGCAGTATATTACATTATCAGCTGTGAATTAATAGTTCCAATAGTAAAGTAAATGGTGGGGATTCTCAGAATGAGGGAGATGTTGCAATAATTTTAACACAGCTTTACAGGGAACAACGGGTCTGTCTCAGAAAGCAGGATTAGTTTAGTCAGCCAGACTTTAACCTTTATTCCTTCTTATAGCTTTCTCActtactgactcactcactcatgttTAGCAGGCTATAGATTCTTCACAGATTCTCCACACCACTAGATCTAATATACactatactgccaaaagtatctgctCCCCTTCTGTAAAGCTGCCATTTGTGAATACACAATAATGTTCTATTAGTGGCAATATATACTATACAtagtatttaaatgattttccacattgttaattaaatgttaacCACCATCATAAAAGATTTTGCTAAATTGGAACTTTGGCTGAGCTAATGGTTTATGAGACAGACTCCAGgtcagtttttaatttaatggtgTACACACTGGAAGTGCTGCCTGCTGTGAGTCACCTCACAGTTTTTCTGATGATTTTTGTACTGTAACTCAGCTCAGATTGAGCACAAATCATAttcaggaaggtgaagactggGAATAAACTTTCTGTAACAGTGACTTAATGACTTGTGTTTATAGTTTAAAGAATGCTTAATGAGAATTAAATCACTTATAAGTACAATAAGCACTTTCAACCTGCAGTGGATACGTAGTCATTATAAACATCTTAACTGTGATTCTGTTAAGCCTCACAcgtgtttttaaaatgtgagtAATTGTTTATCTAAACAAAATGTGACAATGtgcatttattaaattttttttggaagaaattaa

Function

NR:

description
ras association domain-containing protein 1-like isoform X2

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007234451.3 False 2466 mRNA 0.46 8 18903417 18920755
XM_007234452.3 True 2569 mRNA 0.43 5 18903417 18911788

Neighbor

gene id symbol gene type direction distance location
LOC103032073 NA coding downstream 9886 18872251 ~ 18893531 (-)
abhd14a abhd14a,LOC107586929,LOC107756017,LOC107704435,LOC107593054 coding downstream 33364 18862565 ~ 18870053 (-)
acy1 acy1,LOC107575257,LOC107655273 coding downstream 42193 18849900 ~ 18861224 (-)
cacna2d2 cacna2d2,cacna2d2b,LOC107655410 coding downstream 58866 18799929 ~ 18844551 (-)
LOC103038294 LOC108444096 coding downstream 411969 18488677 ~ 18491448 (-)
rad54l2 rad54l2 coding upstream 6272 18927027 ~ 18947393 (-)
LOC103035575 NA coding upstream 278923 19199678 ~ 19203330 (-)
LOC103035880 LOC103035880 coding upstream 285300 19206055 ~ 19213656 (-)
LOC103038073 NA coding upstream 296960 19217715 ~ 19239669 (-)
LOC103038392 NA coding upstream 337977 19258732 ~ 19280996 (-)
G191075 LOC108443907,LOC108271865,LOC108444093,LOC108254800,LOC108443910,LOC108440470 non-coding downstream 114532 18775652 ~ 18788885 (-)
G191074 NA non-coding downstream 125246 18748963 ~ 18778171 (-)
G191079 NA non-coding downstream 151391 18732558 ~ 18752026 (-)
G191077 NA non-coding downstream 174149 18728839 ~ 18729268 (-)
G191095 NA non-coding downstream 177355 18724031 ~ 18726062 (-)
G191296 NA non-coding upstream 124651 19045406 ~ 19099824 (-)
G191321 NA non-coding upstream 274172 19194927 ~ 19196386 (-)
G191326 NA non-coding upstream 307979 19228734 ~ 19229174 (-)
G191328 NA non-coding upstream 328449 19249204 ~ 19249453 (-)
G191329 NA non-coding upstream 332121 19252876 ~ 19253089 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other downstream 1132 18897509 ~ 18902285 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other downstream 104502 18708319 ~ 18798915 (-)
LOC103041510 LOC108414096 other downstream 588080 18311452 ~ 18315337 (-)
mrpl20 mrpl20 other downstream 689887 18139363 ~ 18213530 (-)
LOC111195395 NA other downstream 727253 18167240 ~ 18176164 (-)
LOC103036492 card19,LOC108443695 other upstream 590566 19511321 ~ 19528580 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 2178592 21099347 ~ 21103218 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other upstream 2509261 21430016 ~ 21436453 (-)
elmo2 elmo2,LOC106583331 other upstream 2590169 21510924 ~ 21544831 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other upstream 2926214 21846969 ~ 21851642 (-)

Expression


Co-expression Network