rad54l2 (rad54l2)


Basic Information

Item Value
gene id rad54l2
gene name rad54l2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 18927027 ~ 18947393 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007234454.3
GGTGTTGTGCGCCCCCGCGTGCCGCTTTAGGAGTGACACTCATGGAAAACTGTgatagagaaaataaagaatagAGTGTTTTTtgagaataaattaataaaatcgtGAATGAGGCGCGGGAACGCTGGGACTCGGCTGCAGTGAGGAGCTCGCAGAAGGTGATCCGTGTAAGGATGTGTAGGTAGTGCTCTTGGAGACCCCAGGAGAGACGCCATGTCAGAAGAGGCGATCTCAGAGAGTGACCTGGAGCCCAGTCTCAACAGTGAaccagaggaggatgaggaggagatgGGAGAGGAAGGTGATGGAGAAAATGATGCTGACGATGACGACGatggagatgatgatgatgatgatgatgatgatgatgatgatgatgatgacgacgaCGAAGACGACAATGAAGAAAATGATGCAGCAGATGAGTCAGATGAAATGGATGTGGAGAAACAGGCGGACCGAACGAGCCCTGCCCTCTCTTCTTCTCAGTCCAGTGACTCCGCCCCTGCCACACCCACCCAACCATCCTCCAAACCATCATCAAGACCATCTTCCAGACCACCCTCCAGACCTTCCTCCAGGCCGGTGTCTCAGCCCTCATCCAGGTCCAACTCCCGACCTTCCAGCCCTCAGGGTTCTCAAACTCAGTCTGCTGCTGGGCCCGAGAGCAACAACATTACCACCAAGAAGAAGAGCAAGAACAAGAATAAGAACAAgcacaagaagaagaaagaagaagaaaagaagaagaagagctcaAAGCCTTCCAAACCTGCTCACTTGAGGAGAAATATCAGGAAGCTGCTGAAGGAGCACCAGCTGGAGCCGGGGACTAAAGCTGCCCAGCAGGAAGAGCTAGAGAGGAGAAAACGACTCGAGCAGCAGCGTAAAGATTACCCTTTACCTGCAGTGGACATTCCTACTTTAGCAGCTGTTTGTAAGGGCGAGGTAATCTGCCTGGACAGCAGTGGAGATGAAGGAGAATCCAGAGTAGCAGCTCCCCCTCCAAAACCTGCACCCAGAgatgATGTGATCGAGCTGAGTTCTGGTGATGAAGACGCACTGCCCATCAGCAGTGAGGATGAGGATAATGAGCGCTCGGGTACGCCTGGAACTGAGGAGAGCAGCGGCTCACACATAAATGACTCTCTGAATCAGCCGGACGCTCAGGGAAGAGTACTGGTCAACATCAACCACCCAGCTGAGGAGGAGGACCTGTTCCTCGCACCACAGCTCGCACGAGCCGTTAAACCACATCAGATTGGCGGAATCCGTTTCCTGTATGATAATCTGGTGGAGTCTCTGGAGCGCTATAAGAGCAGCAGTGGGTTCGGCTGTATTCTGGCCCACAGTATGGGTCTGGGCAAAACCCTGCAGGTCATCTCCTTCGTAGATGTTCTACTGCAGCACACGGGAGCCAGAACTGTCCTCGCCATTGTCCCTGTGAACACACTGCAGAACTGGTTAGCTGAGTTTAATCTGTGGTTGCCTTCAGCTGAGTCTATTCCTCCAGACACTGATCCAGCCCACGTTTCCCCCCGAACCTTTAAAGTGCACATCCTCAACGACGAGCACAAGACGACGGCGGCCCGAGCGAAAGTGGTGGATGAGTGGACGAACGACGGCGGGGTTTTGTTAATGGGATACGAGATGTACCGCCTGCTGTCCCTTAAAAAGAGCTTTGTAACCGGACGCAAGAGGAAATCGAAAAAGCCTGCTGGACCGGTCATCATCGACCTGGACGAGGAGGATAGACAGCAGGAGCTAATGAAAGGGATCGAGAAGGCTATTTCCCGGCCCGGTCCGGATGTGGTGATTTGTGATGAGGGTCACCGCATTAAGAACTGCCACGCCAGCACCTCTCAGGCCCTGAAGAACATTCGCTCACGGCGGCGCGTGGTGCTGACCGGTTACCCTCTCCAGAATAACCTGATTGAGTACTGGTGCATGGTGGACTTTGTGAGGCCGGACTTTCTTGGTACCCGTCAGGAATTTAGCAACATGTTTGAACGGCCGATCCTGAACGGTCAGTGTATCGACAGCACGCCGCAGGACGTCCGACTCATGAGGTACCGCAGCCATGTCCTGCACAGCCTGCTGGAGGGCTTCGTACAGAGACGAGGTCATGACGTGTTGCGGACGCAGCTGCCCACTAAAGAGGAGCATGTAATCCTGGTGCGGCTCTCTCCCCTGCAGAGGGCCCTCTACAAAGAGTTCATGAACCGCTTCCGTGAGGCAGGAAACAGCGGCTGGCTGGGTCTAAACCCTCTGAAAGCCTTCTGTGTCTGCTGCAAGATTTGGAACCATCCAGATGTCCTCTATGAAGCTCTTCAGAAGGAGAATATGGCCAACGAGCAGGACCTGGATCTGGATGACCTGAACTCCACCTCAGCTACCCGCTGCAGTGCCCCgggcttaaaaaacaaaaattctgACCCTGCTAACAGTAAAGTGGGGCTAACTGGAATGACCCTCCCTCCCCTACAGGAACGGGCCAACCAGGTCATCACCTATGAATGGGCGAAGGACATCATGACCGGCTATCAGACTGGTGTTCTGGAAAACTCTGCTAAGATGGTTCTGCTTTTCCACCTGATAGACGAGTGTGTCAGTAGAGGAGACAAAATCTTGGTCTTCAGTCAAAGTCTGTCCACCTTAACGGTCATTGAAGACTTTCTGTGTCTGAGGCCGATGCCTATCAAAATAGGGGACCAGACTCAGACTCAGAACTGGGTCCGCAGTATCAACTACTACAgGTTGGATGGGAGCACCTCtgcctcagagagagagaaactcatTAATCAGTTTAACGATCCTGCAAACACCACAGCCTGGGTCTTCCTACTGTCCACCAGGGCGGGGTGTTTAGGAGTGAACCTGATTGGAGCGAATCGAGTGGTCGTGTTCGACGCTTCGTGGAACCCGTGTCACGATGCGCAGGCGGTGTGCCGTGTGTACCGGTACGGCCAGCATAAACCCTGCTACATCTACAGACTGGTGTGTGACTTCACCCTCGAGAAGAAGATCTACGACCGGCAGGTCTCCAAGCAGGGGATGTCTGATCGCGTGGTGGACGATCTAAACCCTGTTCTGACCTTCACCCGGAAAGAGGTGGAATCTCTGCTGCACTTTGTGGAGGAGGAGCCTGATGACAGCCAATCGGAACTGGTGCCTGATGAGGAAGTAGAAGAGGTTATCAGACATGCCTGTCTGCAGTATCCTGACCTTGTCACCAAGCAACCCTTCCATCATGAATCGCTGCTGACGGACCGTAAGGACCTGAAACTGACGAAGGCGGAAAAGAAAGCTGCTAAGAAGAGTTATGAGGATGAGAAGAGGGCATCGGTACCGTACCAGCGGCCAAGCTATGCCCACTATTACCCCGCCACTGACCAGAACCTGTCCAACATACCAGCCTTCAGCCAGAGGAACTGGCGCCCAACGGTACGGTTGGATGAGAAGCCCATAGCGAGTGTGCGGCCAGTTCAGTCTACCCCTATTCCCATGATGCCCCGCCAGGTGGGCATAGGCCACGGCTCCGGCTCCACCTTTCCGGTCAACTACCTTCAGAAAGCTGGAGTCTACGTACAGCGCATTATCACCACCACTGATATTGTGATCCCAGGCACAAACAGCTCTACAGACGTTCAGGCCAGAATCGGCGCTGGGGAGAGTCTTCACGTCATCAAAGGATCCAAAGGTACGTACATCAGGACCAATGATGGAAGGATCTTCGCCATCCGCTCCGGAAAGACGAGAGCCAGTGATGGAGGAGCGTCTTCAGTTAGAGACACCAGTTCTGTGCTGCGTTCAGTCAGCAACGGTCGAGCGTCTCCATCAGAGCCGAAGCGGTTGAGTCCAGACTCCGTCCGGAGAGTTTCACCCTCAAACAGTCCGGACCTGCTGAGGGAGCTGCGCCGCTACACCAACGAGGCTGACGGCCTGGGAAACAACAGCCTGTTGCCCCTGGATGCGGCAGAACCTTCGGGCCTGGACCGCCCATCTCACCAGAGCCGTTCTTTAGAGGGCCCAGCCAGGCAGCTGCATGATGATGTCATGAGCTCTGGCTCCACCCCCACCCTCGACATCCAAACGTTGAAAAGGAAACTGATGGCAGACAACAGGGGCTCCAAACGGACCTCTGCACCAAGCGGAGCTTCCGGCAGCTACCAAGGATACTCTTTAGGCAGCGGCTTCAACATGCCGTCTATGAACCTTCACCCAGCCCTGTTCGGTGCTTTGAATCACATGACCCCTCCCATTATGGGCGGGGCCAGTCGCTCTCACTACTTTCCGCAGGCAGGGCAAACGCTGACTGATTTGCATACCATGTTCCCATCTGACACTTTAGGTTCCTCCCATTCTTCCTCAGCCAACACAACCACCACAACTTCCTCCTCCTCCGCACCTTCAGCATcgtcatcctcctcttcctcactcccTCCTTTCCTCTACAACCCTAACATGGCCAACATATTGTCCGGTATTTCTGGTATGCCGTACAGTCAGTCTCTCCTCCCGAACTCTAGAATAGACTCAAGAATATTCCCCAACTCCTCGATGCACCCAGGGGGCGCTCTCTCTTCTGCCTCTACCGGCTCCGCCTCCACCGCTGCTGCCACGCCCAGCTTCCTCTCCACCTCCAGCCTGCTGGGGGCGGCTTTAACGCGGCCGGacactcacccaagcctggcgGAAAATGGGGGGAGCAGTTCAGACGATGATGTCATTGAGGTGACTGGACAGTGATGTGATTCGCAGCGctgcattgtgattggctgcttAATTTCAGCAACCGTCTTTTGGTACTGTGTGGATCTGAATGCAAAAGGCACAGAAAGGGACCAGAACACGAGCTtccatgactggctaaaatccGGAAGCCAATCCTCCCGCTGACCAGAACTCGATGTGGTTGTCTTTAGGTTGCATCTGTAAAAGGTaaatttagatatatttagcTGTTTGATAGATCTTGTAGCATCAAATGGAATGCGGAAAACATTGTGAAAAactttttccccccttttttttatGGATCCTGTAAGTACTACCTTTTTGTAAAGGGTGGAGTTTTgaccattttaaaattaagaacAGGGCAAGGATTATGGAGAGGTGGGTGGGTAGGAGACTATAGGTATTCACAagccattattttgttttgtattatgTTCAATCTTTAAATAGAagaacaaataatgaaaaaaatcaacTCAAAGAATGTAATTTCATGTTAGCCTTCAGAGCCTTGTGGTGGAGGGTGATTATAGCTGGGGTTTAGTCTTATTGTCCGTAGCCTTATATCGCTTGTGGATCTGGTTTGTATGTTATTTACTCCTGTagcagatttaatttttttggttgGGTTTCTTTTTTTGGTCCCTGCTAAATTAATTATGAGAAAAAAATTGTGTAGACTGTTACCCtaccccccccccaaaacccTAAACCCACCCTCATTATCACCCTCACCCCCCTTTTTTGGACTTGTTTGGGTTGAAAAATACTTGGTTCCTGTATGACGTGTGTGTAGTTCATAGCCTGTTCCATCCATCTATGTTTGGACTACAATTATGACCAAAGTGTGACTTCTACATCGATGTGGAATGTTCCAAGTATTCGTGTTCTAACTAACCCTCCTGTCCTGTGCTGTTCGACTGACAGACCTTTTTGCCAGTCACTGTTCATTCTAGGTGCCTATTGGTGCACACCCCTCAAGCCCCTCCTACCACTGCTGTCTTATTGGCTGATGCCCATGtcgatttgttttattattgggCGACATCTGTACGTTATTTGTtacataaactttttttttttttagtatagcataaatttttgtatcttttttttttttgtaacatctTATCAATGGAAGcataactgtttttttcccttgATGTATTGTCTTAccagaattatttatttataatggtTGATtaatttgcaatttttttatttttgtacatttgtctgcatttctttctttctcttttttctttctttttttattaaaacaggaaaacaaacaaaaaaacctgTTCTCCTTTCCACCAGAGAGGTCGACACAGGTTTgaggtttttgtgttttgtttttctcaaaAAGTTTAAGACCAGTATCTGTGACAGATCCACTggagagaacacacacaaacactctcttGTACAGGTAGAAATTGAGACTCATCAGCTCTTGTATTTAGCACACAGAGGAGGCGTTCAAAATgacattgtatttatttaatgttgttttaacagaaaataaattgaaCTTTTCTTGCTGTAA

Function

symbol description
rad54l2 Predicted to enable ATP binding activity. Predicted to be active in nucleus. Orthologous to human RAD54L2 (RAD54 like 2).

NR:

description
helicase ARIP4-like isoform X1

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K10876 RAD54L2; RAD54-like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007234454.3 True 6289 mRNA 0.50 22 18927027 18947393

Neighbor

gene id symbol gene type direction distance location
LOC103033109 LOC103033109,LOC108443914 coding downstream 6272 18903417 ~ 18920755 (-)
LOC103032073 NA coding downstream 33496 18872251 ~ 18893531 (-)
abhd14a abhd14a,LOC107586929,LOC107756017,LOC107704435,LOC107593054 coding downstream 56974 18862565 ~ 18870053 (-)
acy1 acy1,LOC107575257,LOC107655273 coding downstream 65803 18849900 ~ 18861224 (-)
cacna2d2 cacna2d2,cacna2d2b,LOC107655410 coding downstream 82476 18799929 ~ 18844551 (-)
LOC103035575 NA coding upstream 252285 19199678 ~ 19203330 (-)
LOC103035880 LOC103035880 coding upstream 258662 19206055 ~ 19213656 (-)
LOC103038073 NA coding upstream 270322 19217715 ~ 19239669 (-)
LOC103038392 NA coding upstream 311339 19258732 ~ 19280996 (-)
LOC111195448 NA coding upstream 334710 19282103 ~ 19312759 (-)
G191075 LOC108443907,LOC108271865,LOC108444093,LOC108254800,LOC108443910,LOC108440470 non-coding downstream 138142 18775652 ~ 18788885 (-)
G191074 NA non-coding downstream 148856 18748963 ~ 18778171 (-)
G191079 NA non-coding downstream 175001 18732558 ~ 18752026 (-)
G191077 NA non-coding downstream 197759 18728839 ~ 18729268 (-)
G191095 NA non-coding downstream 200965 18724031 ~ 18726062 (-)
G191296 NA non-coding upstream 98013 19045406 ~ 19099824 (-)
G191321 NA non-coding upstream 247534 19194927 ~ 19196386 (-)
G191326 NA non-coding upstream 281341 19228734 ~ 19229174 (-)
G191328 NA non-coding upstream 301811 19249204 ~ 19249453 (-)
G191329 NA non-coding upstream 305483 19252876 ~ 19253089 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other downstream 24742 18897509 ~ 18902285 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other downstream 128112 18708319 ~ 18798915 (-)
LOC103041510 LOC108414096 other downstream 611690 18311452 ~ 18315337 (-)
mrpl20 mrpl20 other downstream 713497 18139363 ~ 18213530 (-)
LOC103036492 card19,LOC108443695 other upstream 563928 19511321 ~ 19528580 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 2151954 21099347 ~ 21103218 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other upstream 2482623 21430016 ~ 21436453 (-)
elmo2 elmo2,LOC106583331 other upstream 2563531 21510924 ~ 21544831 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other upstream 2899576 21846969 ~ 21851642 (-)

Expression


Co-expression Network