LOC103035575


Basic Information

Item Value
gene id LOC103035575
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 19199678 ~ 19203330 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007234459.3
GGTATCAGAAGATCTTCAGACTgaacagaggagaaggatggagtTAATAAaagtcctgctgctgctgtcgggactctgctctctctccacaGCACAGACTCAGGACCCCCTCATCCCAACCATCAACGTTCTGAAGGAGATTTTAGCCCTGAAATCTGAGATCCTCCAGCTAAAAGATGAGGTCAAAACCCTGCGGGAagGTCACCCTAAAATAGCATTTACCGCAGCTCTCGACACAGCAGGAATAAACGCACACATCGGACCCTTCTCCACAGACACAACGCTGGTCTTCAAACATGTGGAAACAAACATTGGTGAAGGTTTCAACCCAGAAACTGGAGTGTTCACAGCCCCGGTGAATGGAGTTTACTTCTTTGCCTTTAACTGTTTCGCTGGAGCGAGAAAAGCGATGAGTTCAGCTCTGTATAAAAACGAGCAGCACATCGTTTCCGTCTGGGACCAGCCGACGACAGGAGACAACGAGGACAACAACTTTAACGCTGCCACTCTGCTGCTGGAACCGGGAGACCGGGTCTACATCAGACTCTGGAAAAACTCCCACATTTCCAAACTGGATAAACACAGCACCTTCAGCGGCTTCCTGATCTACCCTTTAAAATCAGAGACTTCTACACCAACCCTGCAGCATCCTCCACCCGCTAACTAACCCTGAACACTGGAGcacaacaaatatatatacttaattgcagaggtggaaagtaatgaattaaatttactcaagttactgtaattgagtagattttatgagtaatttgtaatttttcaagtagtttttaaaataggtaattttacttttactcaagtacattttgacacaagtaatttacttcgctacattggaaaactcccaattactgagtaaaaaataaaatgctgggggaaaaaaaacacaactgtctgaattaaaaaaataaataaatgttgcgGATGCACCAGCGCAAACTAATTACAAATTGTATcaatttgtaattaattaaaacattacttaacaatttaa

Function

GO:

id name namespace
GO:0050878 regulation of body fluid levels biological_process
GO:0019538 protein metabolic process biological_process
GO:0030162 regulation of proteolysis biological_process
GO:0001775 cell activation biological_process
GO:0030168 platelet activation biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:0051246 regulation of protein metabolic process biological_process
GO:0007596 blood coagulation biological_process
GO:0007599 hemostasis biological_process
GO:0006508 proteolysis biological_process
GO:0050817 coagulation biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007234459.3 True 1018 mRNA 0.42 3 19199678 19203330

Neighbor

gene id symbol gene type direction distance location
rad54l2 rad54l2 coding downstream 252285 18927027 ~ 18947393 (-)
LOC103033109 LOC103033109,LOC108443914 coding downstream 278923 18903417 ~ 18920755 (-)
LOC103032073 NA coding downstream 306147 18872251 ~ 18893531 (-)
abhd14a abhd14a,LOC107586929,LOC107756017,LOC107704435,LOC107593054 coding downstream 329625 18862565 ~ 18870053 (-)
acy1 acy1,LOC107575257,LOC107655273 coding downstream 338454 18849900 ~ 18861224 (-)
LOC103035880 LOC103035880 coding upstream 2725 19206055 ~ 19213656 (-)
LOC103038073 NA coding upstream 14385 19217715 ~ 19239669 (-)
LOC103038392 NA coding upstream 55402 19258732 ~ 19280996 (-)
LOC111195448 NA coding upstream 78773 19282103 ~ 19312759 (-)
LOC103037635 NA coding upstream 112488 19315818 ~ 19346307 (-)
G191321 NA non-coding downstream 3292 19194927 ~ 19196386 (-)
G191296 NA non-coding downstream 99854 19045406 ~ 19099824 (-)
G191075 LOC108443907,LOC108271865,LOC108444093,LOC108254800,LOC108443910,LOC108440470 non-coding downstream 410793 18775652 ~ 18788885 (-)
G191074 NA non-coding downstream 421507 18748963 ~ 18778171 (-)
G191079 NA non-coding downstream 447652 18732558 ~ 18752026 (-)
G191326 NA non-coding upstream 25404 19228734 ~ 19229174 (-)
G191328 NA non-coding upstream 45874 19249204 ~ 19249453 (-)
G191329 NA non-coding upstream 49546 19252876 ~ 19253089 (-)
G191339 NA non-coding upstream 124636 19327966 ~ 19328622 (-)
G191337 NA non-coding upstream 214901 19418231 ~ 19428960 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other downstream 297393 18897509 ~ 18902285 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other downstream 400763 18708319 ~ 18798915 (-)
LOC103041510 LOC108414096 other downstream 884341 18311452 ~ 18315337 (-)
mrpl20 mrpl20 other downstream 986148 18139363 ~ 18213530 (-)
LOC103036492 card19,LOC108443695 other upstream 307991 19511321 ~ 19528580 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 1896017 21099347 ~ 21103218 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other upstream 2226686 21430016 ~ 21436453 (-)
elmo2 elmo2,LOC106583331 other upstream 2307594 21510924 ~ 21544831 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other upstream 2643639 21846969 ~ 21851642 (-)

Expression


Co-expression Network