LOC103035880 (LOC103035880)


Basic Information

Item Value
gene id LOC103035880
gene name LOC103035880
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 19206055 ~ 19213656 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007234460.3
GCTCTGCTGACTCCGCCTGCCCAGTGCCCTGTGCACGAGCAGCGCGCGCACGCTGGAGTTTGGGGTAGTTTGGGATTTTTGCCCCCGGAGGAATTCTCTTACCCCGCGGATTAATCTCTCAGCAGAGGGGGAGATGTTGGGTTGTGGGCGGTCCTGGTTGGTGGTCTTCGCTCTGTTCCAGGCTGGACTGACCCTGGAGAACAGCTGTTCTGAGCACTGTAGAGCCTGTGGAGGACCTGAGAGAGACCAGTGCCTGCAGTGCCAGCCAGGGTTCACCCTCCATGACAACGAGTGTGTGGatatCGACGAGTGCGGCACAGAGCTGGACAAGTGCCCCTCAAACACATACTGCatcaacacacactcctcatacGAGTGCAGAGggtGTGACAGGGCGTGTGTGGGCTGTATGGGTGGGGGTCCTGCTCGCTGTAAGAAATGTGCCCCTGGTTTTATATCTATGGGTGTAAAGTGTGTAGatgtAGACGAGTGCAGTGAGGAGGTTCTGGCCTGTTCTGATATAAACGCTCTGTGTGTGAATACGGAGGGGTCCTTCCAGTGCCAGTGTGCTCCGGGCTTCACACGccgagacagtgtgtgtgtgaggattcAGCAGCcagTGGGTGAGGAGAGGAGTCTGCTGGatgagctgcaggaggaggaggtggaggtgttGAAGCAGATGTTTTTTGGGGTGGTGCTGTGCGCTCTGGCTACGCTGGCCGCTAAAGGGGACATGGTCTTCACCTCCATTTTTATGGGGGCGGTCGCGGCCGTGGCGGGATACTGGCTGTCGGACAAGACTGACCGCATGCTGGGGAGCTTCATGAAGGGCCGGTGAAGATCACTGGAGGAGGGAGTAGACTACTGGAACCGCAGGAACGTTTCGTTTGTGTCACTGTAGCTCTACAAAcagaattatggatttattatagAAATCAGTGGATTTAAAGCAGTGTGTTAACTACATGCACTTCATAAGTTCTGTAGTTATGTGATTATTCACATAATCtaaatttaaaggagaactctggtgtaaaaaggacttttgttgtagtaaaacatgataaaaagttctgagatccagaaat

Function

NR:

description
cysteine-rich with EGF-like domain protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007234460.3 True 1091 mRNA 0.53 6 19206055 19213656

Neighbor

gene id symbol gene type direction distance location
LOC103035575 NA coding downstream 2725 19199678 ~ 19203330 (-)
rad54l2 rad54l2 coding downstream 258662 18927027 ~ 18947393 (-)
LOC103033109 LOC103033109,LOC108443914 coding downstream 285300 18903417 ~ 18920755 (-)
LOC103032073 NA coding downstream 312524 18872251 ~ 18893531 (-)
abhd14a abhd14a,LOC107586929,LOC107756017,LOC107704435,LOC107593054 coding downstream 336002 18862565 ~ 18870053 (-)
LOC103038073 NA coding upstream 4059 19217715 ~ 19239669 (-)
LOC103038392 NA coding upstream 45076 19258732 ~ 19280996 (-)
LOC111195448 NA coding upstream 68447 19282103 ~ 19312759 (-)
LOC103037635 NA coding upstream 102162 19315818 ~ 19346307 (-)
LOC103044861 NA coding upstream 144757 19358413 ~ 19390900 (-)
G191321 NA non-coding downstream 9669 19194927 ~ 19196386 (-)
G191296 NA non-coding downstream 106231 19045406 ~ 19099824 (-)
G191075 LOC108443907,LOC108271865,LOC108444093,LOC108254800,LOC108443910,LOC108440470 non-coding downstream 417170 18775652 ~ 18788885 (-)
G191074 NA non-coding downstream 427884 18748963 ~ 18778171 (-)
G191079 NA non-coding downstream 454029 18732558 ~ 18752026 (-)
G191326 NA non-coding upstream 15078 19228734 ~ 19229174 (-)
G191328 NA non-coding upstream 35548 19249204 ~ 19249453 (-)
G191329 NA non-coding upstream 39220 19252876 ~ 19253089 (-)
G191339 NA non-coding upstream 114310 19327966 ~ 19328622 (-)
G191337 NA non-coding upstream 204575 19418231 ~ 19428960 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other downstream 303770 18897509 ~ 18902285 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other downstream 407140 18708319 ~ 18798915 (-)
LOC103041510 LOC108414096 other downstream 890718 18311452 ~ 18315337 (-)
mrpl20 mrpl20 other downstream 992525 18139363 ~ 18213530 (-)
LOC103036492 card19,LOC108443695 other upstream 297665 19511321 ~ 19528580 (-)
brk1 brk1,BRK1,LOC106565571 other upstream 1885691 21099347 ~ 21103218 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other upstream 2216360 21430016 ~ 21436453 (-)
elmo2 elmo2,LOC106583331 other upstream 2297268 21510924 ~ 21544831 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other upstream 2633313 21846969 ~ 21851642 (-)

Expression


Co-expression Network