LOC103041505 (pnp4a,LOC103041505,LOC108411380,LOC107727193,LOC107685744,LOC107655042,LOC107727769,LOC107559547)


Basic Information

Item Value
gene id LOC103041505
gene name pnp4a,LOC103041505,LOC108411380,LOC107727193,LOC107685744,LOC107655042,LOC107727769,LOC107559547
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 23682209 ~ 23696247 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007234731.3
GGTCTGAAACTGTTCTCTCTCATTCACATGCTGCTCTCCTCCAGGACTGACTATCAGCAGACAGCGCTGTAAACTCTCTCTCACGCACCGGAAAAACAACCATGCACAGTAAAGACCAGATCAGTCACGATGACTACCAGACGAcagctgattggctgctctCCCAGACACAGCACAGACCTAAAGTGGCCATCATCTGTGGTTCCGGACTGGGCATGCTGGCCGAGGCTCTCCAGTGTCAAGACTCCTTCAAATACTCCGATATTCCTGGCTTTCCTCAGAGCACAGTTCAGGGGCATGCTGGGAGGCTGGTGTTCGGTGAGCTCAGGGGAAAgacctgtgtgtgtatgcaggGCCGATTCCACATGTATGAGGGACACTCGCTATGTAAGGTCACGTTCCCAGTGAGAGTATTTAAGCTTTTGGGGGTGGAGACTCTGATTGTAACGAATGCTGCAGGCTCGTTAGCAGACAGCTATCAGTGTGGCGACATCATGATCATCAGAGATCACATTAACTTCCCTGGACTTGCTGGACTGAACCCACTCAACGGCCCCAATGATGACAAGTTTGGACCTCGCTTCCCTCCTATGTCTGGGGTTTATGATAAAGACCTTCGCAAGCTGGCTTTTGACATCTGTAAAAGCATGGGCGTGTCCCAGTATGTTCAGGAAGGCGTGTACTGTATGGTGGGTGGACCCAACTTTGAAAGCATAGCGGAGGCTCGGCTTCTGCACAGACTGGGGGTGGATGCAGTAGGTATGAGCACAGCGCCGGAGGTTCTGGTGGCGAGTCACTGCGGGATGCGAGTGTTCGGACTCTCCCTCATCACTAATAAAGTGGTGAAGAGCTATCAGGACTCTGAGACGGTCAACCACGAGGCCGTGCTGGAGGTCAGCAAGATGCGGTCAGAGTCTCTGCAGAAGCTCGTCACTGAACTGGTCGGCCGCATGGACATCAATAACAACACGGCGTGATGCATACCTCGTCCCCGTTCATGAAACCCGTCCATTAAACCTGATATATCTTACAATGTCA
>XM_022682680.1
agctgggagaagcgcctaagtaaacaaaactgtaattcttaaaaaaaaacttactttaaAAGTCAAAGGAGCGCTGGAAATGAACCTACTTagatttctctgctgaaaacggtttatttggGACTGACTATCAGCAGACAGCGCTGTAAACTCTCTCTCACGCACCGGAAAAACAACCATGCACAGTAAAGACCAGATCAGTCACGATGACTACCAGACGAcagctgattggctgctctCCCAGACACAGCACAGACCTAAAGTGGCCATCATCTGTGGTTCCGGACTGGGCATGCTGGCCGAGGCTCTCCAGTGTCAAGACTCCTTCAAATACTCCGATATTCCTGGCTTTCCTCAGAGCACAGTTCAGGGGCATGCTGGGAGGCTGGTGTTCGGTGAGCTCAGGGGAAAgacctgtgtgtgtatgcaggGCCGATTCCACATGTATGAGGGACACTCGCTATGTAAGGTCACGTTCCCAGTGAGAGTATTTAAGCTTTTGGGGGTGGAGACTCTGATTGTAACGAATGCTGCAGGCTCGTTAGCAGACAGCTATCAGTGTGGCGACATCATGATCATCAGAGATCACATTAACTTCCCTGGACTTGCTGGACTGAACCCACTCAACGGCCCCAATGATGACAAGTTTGGACCTCGCTTCCCTCCTATGTCTGGGGTTTATGATAAAGACCTTCGCAAGCTGGCTTTTGACATCTGTAAAAGCATGGGCGTGTCCCAGTATGTTCAGGAAGGCGTGTACTGTATGGTGGGTGGACCCAACTTTGAAAGCATAGCGGAGGCTCGGCTTCTGCACAGACTGGGGGTGGATGCAGTAGGTATGAGCACAGCGCCGGAGGTTCTGGTGGCGAGTCACTGCGGGATGCGAGTGTTCGGACTCTCCCTCATCACTAATAAAGTGGTGAAGAGCTATCAGGACTCTGAGACGGTCAACCACGAGGCCGTGCTGGAGGTCAGCAAGATGCGGTCAGAGTCTCTGCAGAAGCTCGTCACTGAACTGGTCGGCCGCATGGACATCAATAACAACACGGCGTGATGCATACCTCGTCCCCGTTCATGAAACCCGTCCATTAAACCTGATATATCTTACAATGTCA

Function

symbol description
pnp4a Predicted to enable purine-nucleoside phosphorylase activity. Predicted to act upstream of or within nucleoside metabolic process. Predicted to be active in cytoplasm. Is expressed in several structures, including eye; iridoblast; neural crest; optic vesicle; and presumptive retinal pigmented epithelium. Human ortholog(s) of this gene implicated in purine nucleoside phosphorylase deficiency and purine-pyrimidine metabolic disorder. Orthologous to human PNP (purine nucleoside phosphorylase).

NR:

description
purine nucleoside phosphorylase-like

GO:

id name namespace
GO:0009116 nucleoside metabolic process biological_process
GO:0004731 purine-nucleoside phosphorylase activity molecular_function

KEGG:

id description
K03783 punA, PNP; purine-nucleoside phosphorylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007234731.3 False 1038 mRNA 0.52 6 23682209 23691858
XM_022682680.1 True 1115 mRNA 0.51 7 23682209 23696247

Neighbor

gene id symbol gene type direction distance location
LOC103042306 NA coding downstream 1818 23673108 ~ 23680391 (-)
LOC103041805 gem,rem1,LOC108411381,LOC107727768,LOC107655086,LOC107727184,LOC107685743,LOC107554936 coding downstream 21917 23648266 ~ 23660292 (-)
LOC103042624 rbm39,LOC107655082,LOC107727761,LOC107602070 coding downstream 46383 23624910 ~ 23635826 (-)
nfs1 nfs1,LOC107601922,LOC107559867 coding downstream 60091 23609253 ~ 23622118 (-)
LOC103047010 syt6,LOC107727826,LOC107560238,LOC107655078 coding downstream 400190 23208885 ~ 23282019 (-)
LOC111195461 NA coding upstream 102511 23798758 ~ 23801417 (-)
LOC103046362 maf1,LOC108425756,LOC108254834,LOC107727190,LOC107685718,LOC107602775,LOC106583327 coding upstream 252284 23948531 ~ 23956337 (-)
zc3h11a NA coding upstream 261581 23957828 ~ 23970167 (-)
LOC103040327 LOC108425717 coding upstream 284296 23980543 ~ 23988199 (-)
LOC103040645 chia.2,chia.3,LOC108425699,LOC107555079,LOC107685745,LOC107727181,LOC107655977,LOC107727762 coding upstream 298376 23994623 ~ 24001948 (-)
G192439 dvl1,LOC108411373,LOC107685713,LOC107560111,LOC107749512,LOC107655081,LOC107727776 non-coding downstream 75178 23602319 ~ 23607031 (-)
G192428 NA non-coding downstream 123033 23544535 ~ 23559176 (-)
G192365 NA non-coding downstream 352896 23329074 ~ 23329313 (-)
G192336 NA non-coding downstream 457606 23216176 ~ 23224603 (-)
G192335 NA non-coding downstream 458840 23215590 ~ 23223369 (-)
G192484 NA non-coding upstream 180388 23876635 ~ 23884538 (-)
G192574 NA non-coding upstream 295949 23992196 ~ 24049734 (-)
G192578 NA non-coding upstream 359047 24055294 ~ 24055585 (-)
G192579 NA non-coding upstream 386557 24082804 ~ 24083308 (-)
G192589 NA non-coding upstream 564387 24260634 ~ 24262555 (-)
G192251 adipor1,LOC107749488,LOC107385668 other downstream 623404 23054633 ~ 23058805 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other downstream 878567 22786163 ~ 22803642 (-)
amhr2 NA other downstream 959304 22709549 ~ 22722905 (-)
alas1 alas1,LOC106583798 other downstream 1319751 22349347 ~ 22362458 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other downstream 1830567 21846969 ~ 21851642 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other upstream 342999 24039246 ~ 24105898 (-)
G192815 mdm4 other upstream 1515428 25211675 ~ 25217550 (-)
LOC111195415 tfeb other upstream 2178663 25874910 ~ 25878653 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other upstream 3015006 26711253 ~ 26724106 (-)
G193097 NA other upstream 3335416 27031663 ~ 27033089 (-)

Expression


Co-expression Network