LOC103042306


Basic Information

Item Value
gene id LOC103042306
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 23673108 ~ 23680391 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007234734.2
TGCTGGTTGCTAAGCTGCTGAAACTATAAAACAATAAGGCCTGTCTCTCAGTCAGAGCGGTGAGCTGTTTCAGTATTATACCTGTTTATATATCTGCAGGTAAAAGTTTTTAACAGCGGGGATAGTTAATAAACGCTCTGAGTGAAGCTACAGGTGCTTTGAGCAGGCGAAGGATTTCCTCTGATATGAATAAAGTTTCTCAGCAGGTTCTCCTGAGTTCTCTCAGAGAGGAGCTTCAGACTGTGGATTACAGCAAGTGGGAGCGGACTAAAACATTCAGATCAAATGGCTTAAAATCAACAAAACCAAAAATCGTGCACTGGAGCGCATCATGTACTGATCATAAAGAGGCCAGATCATcacacagaccaatcacagggCGAGGGGGGAACACTACGCAgcccaatgaaaaaaaacacctacaACCTGAGAAGTCCGGGGCACCTGCAGCATCTTCTAGACTCTCCAGAAGAACCttgaaaaacactaaaaaggAGCATCAGGAATCCATCAGCAGAAGTGATCAGATCCAAACACAGGAGctgcttaTCAGGCTGCAGAGATGGTCTATAGCGGATATGGGAAGGCGGTGTGAAGATCTTCAGGAGGCAAATCAAAAGGTGATCAGAGATATCGAAAATACAGAGCGTGATTCCTTCTCCAGCGTTAGAGAATCCCTGAATCTACACCAGAAACTGGGGAATTCAGTATCTGCCTTAAAGCGATGGAGTGACCAGCAGATCAGACAGGCCAAGTCAGATCTGAAGAATGAACTCGAGGAGGCAGAAAATCATCTATCTGGACTTCAAGCTCAGCTAAAGGCAGTGACAGCAGATGTGGCTGATGCCCAGGCAAAGCTTCGTTGCCTAAAGACCTATAAAGACATGGAGTATCCAGTCAAAGCCCTGCAGATCACTGAAATGAAGAGAGAACTGGAGATGCTCAAGCAGGTACAGCAGgctGAATATGAGGAAGTGAAGCGCCTGTGTCAGGCGGAGATGACCCGTCTAGAGACACAGCTCATCCAGAGACAACATGAAGTGATGTCCGCCACAGCCCAACAAAAACTATCCCAGATCCCTCCAGCTGTGATACGGATGGCCGCACAGAACCGAGCAATGAAGGCCGAGATTGATAGCTACAAGAAGTCGACCTACGTAGCTATAAGCACAGATTTGACTGAAATCAGATTGTGCAAGTTGATTTAGtatacaatatttacatttcttatAAACATTCATTAATATAAATTCATTGATAAACGTCTGTAAAATGCCTGTACACCTTATTACTTCCACATGGAgtatcttgaaggaaggaaatATAATGGAttgctaaaaatctgttttgtatttttatattaaaagatATTTCAAGGAATCAGATAGGaaatttcaaatattttacatGTCTTTATTGAGTGGAGCCCCCTTGTCTTTGTCCTGGGAGTGTTCCCAATCGAGATGTTAAGCAAAGAAATATTATATCTGTTTAGATTAATGGTTCTGGTAGCTCAGAAAATGGTCACTGTAAATTGGTATAAACCTTTAACTCCCACTGCAAATCAATGGAAAGAGAGATTGGTAAAGGTTTATAACATGGAGAAAATAACagcatttatttgatttatttaggaAAAGGTGGAATCCACTGATTACATACCTAGATCTGACAGAATAGCCTGTTAGATTGTGTTAAAGGATACATGTATGTATGAGTATGagcatttatgtgtgtgtagataGGAGTATCTGtgtacagatgtgcaaatgcgctttgctgtgtatgtgtatgggtatatatatgtgtatgtgtatgtatgtatatgtatatatgtactgGACAGTAACATACTATATAGAAAGTACTAGACAGATGTTAGtataagtaattattattactattttttttaatctctccgAACTGTAGAGTACAGGTTTTAATAAGATGTCCGCCCGccaagacgtttttttttcttttgtttatgttCAATTGTTCTATTTCATTGTACTGAAAATACAGTCTGTGGCTTAAATCTGTATTACAATGATCTTGTACTATTAACAGTATATGCCATTTATGCAATAAAAGtacttctgtt
>XM_022682679.1
TGCTGGTTGCTAAGCTGCTGAAACTATAAAACAATAAGGCCTGTCTCTCAGTCAGAGCGGTGAGCTGTTTCAGTATTATACCTGTTTATATATCTGCAGGTAAAAGTTTTTAACAGCGGGGATAGTTAATAAACGCTCTGAGTGAAGCTACAGGTGCTTTGAGCAGGCGAAGGATTTCCTCTGATATGAATAAAGTTTCTCAGCAGGTTCTCCTGAGTTCTCTCAGAGAGGAGCTTCAGACTGTGGATTACAGCAAGTGGGAGCGGACTAAAACATTCAGATCAAATGGCTTAAAATCAACAAAACCAAAAATCGTGCACTGGAGCGCATCATGTACTGATCATAAAGAGGCCAGATCATcacacagaccaatcacagggCGAGGGGGGAACACTACGCAgcccaatgaaaaaaaacacctacaACCTGAGAAGTCCGGGGCACCTGCAGCATCTTCTAGACTCTCCAGAAGAACCttgaaaaacactaaaaaggAGCATCAGGAATCCATCAGCAGAAGTGATCAGATCCAAACACAGGAGctgcttaTCAGGCTGCAGAGATGGTCTATAGCGGATATGGGAAGGCGGTGTGAAGATCTTCAGGAGGCAAATCAAAAGAATTCAGTATCTGCCTTAAAGCGATGGAGTGACCAGCAGATCAGACAGGCCAAGTCAGATCTGAAGAATGAACTCGAGGAGGCAGAAAATCATCTATCTGGACTTCAAGCTCAGCTAAAGGCAGTGACAGCAGATGTGGCTGATGCCCAGGCAAAGCTTCGTTGCCTAAAGACCTATAAAGACATGGAGTATCCAGTCAAAGCCCTGCAGATCACTGAAATGAAGAGAGAACTGGAGATGCTCAAGCAGGTACAGCAGgctGAATATGAGGAAGTGAAGCGCCTGTGTCAGGCGGAGATGACCCGTCTAGAGACACAGCTCATCCAGAGACAACATGAAGTGATGTCCGCCACAGCCCAACAAAAACTATCCCAGATCCCTCCAGCTGTGATACGGATGGCCGCACAGAACCGAGCAATGAAGGCCGAGATTGATAGCTACAAGAAGTCGACCTACGTAGCTATAAGCACAGATTTGACTGAAATCAGATTGTGCAAGTTGATTTAGtatacaatatttacatttcttatAAACATTCATTAATATAAATTCATTGATAAACGTCTGTAAAATGCCTGTACACCTTATTACTTCCACATGGAgtatcttgaaggaaggaaatATAATGGAttgctaaaaatctgttttgtatttttatattaaaagatATTTCAAGGAATCAGATAGGaaatttcaaatattttacatGTCTTTATTGAGTGGAGCCCCCTTGTCTTTGTCCTGGGAGTGTTCCCAATCGAGATGTTAAGCAAAGAAATATTATATCTGTTTAGATTAATGGTTCTGGTAGCTCAGAAAATGGTCACTGTAAATTGGTATAAACCTTTAACTCCCACTGCAAATCAATGGAAAGAGAGATTGGTAAAGGTTTATAACATGGAGAAAATAACagcatttatttgatttatttaggaAAAGGTGGAATCCACTGATTACATACCTAGATCTGACAGAATAGCCTGTTAGATTGTGTTAAAGGATACATGTATGTATGAGTATGagcatttatgtgtgtgtagataGGAGTATCTGtgtacagatgtgcaaatgcgctttgctgtgtatgtgtatgggtatatatatgtgtatgtgtatgtatgtatatgtatatatgtactgGACAGTAACATACTATATAGAAAGTACTAGACAGATGTTAGtataagtaattattattactattttttttaatctctccgAACTGTAGAGTACAGGTTTTAATAAGATGTCCGCCCGccaagacgtttttttttcttttgtttatgttCAATTGTTCTATTTCATTGTACTGAAAATACAGTCTGTGGCTTAAATCTGTATTACAATGATCTTGTACTATTAACAGTATATGCCATTTATGCAATAAAAGtacttctgtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007234734.2 True 2101 mRNA 0.40 8 23673108 23680391
XM_022682679.1 False 2020 mRNA 0.40 8 23673108 23680391

Neighbor

gene id symbol gene type direction distance location
LOC103041805 gem,rem1,LOC108411381,LOC107727768,LOC107655086,LOC107727184,LOC107685743,LOC107554936 coding downstream 12816 23648266 ~ 23660292 (-)
LOC103042624 rbm39,LOC107655082,LOC107727761,LOC107602070 coding downstream 37282 23624910 ~ 23635826 (-)
nfs1 nfs1,LOC107601922,LOC107559867 coding downstream 50990 23609253 ~ 23622118 (-)
LOC103047010 syt6,LOC107727826,LOC107560238,LOC107655078 coding downstream 391089 23208885 ~ 23282019 (-)
LOC103045076 gpr25 coding downstream 510689 23159668 ~ 23162419 (-)
LOC103041505 pnp4a,LOC103041505,LOC108411380,LOC107727193,LOC107685744,LOC107655042,LOC107727769,LOC107559547 coding upstream 1818 23682209 ~ 23696247 (-)
LOC111195461 NA coding upstream 118367 23798758 ~ 23801417 (-)
LOC103046362 maf1,LOC108425756,LOC108254834,LOC107727190,LOC107685718,LOC107602775,LOC106583327 coding upstream 268140 23948531 ~ 23956337 (-)
zc3h11a NA coding upstream 277437 23957828 ~ 23970167 (-)
LOC103040327 LOC108425717 coding upstream 300152 23980543 ~ 23988199 (-)
G192439 dvl1,LOC108411373,LOC107685713,LOC107560111,LOC107749512,LOC107655081,LOC107727776 non-coding downstream 66077 23602319 ~ 23607031 (-)
G192428 NA non-coding downstream 113932 23544535 ~ 23559176 (-)
G192365 NA non-coding downstream 343795 23329074 ~ 23329313 (-)
G192336 NA non-coding downstream 448505 23216176 ~ 23224603 (-)
G192335 NA non-coding downstream 449739 23215590 ~ 23223369 (-)
G192484 NA non-coding upstream 196244 23876635 ~ 23884538 (-)
G192574 NA non-coding upstream 311805 23992196 ~ 24049734 (-)
G192578 NA non-coding upstream 374903 24055294 ~ 24055585 (-)
G192579 NA non-coding upstream 402413 24082804 ~ 24083308 (-)
G192589 NA non-coding upstream 580243 24260634 ~ 24262555 (-)
G192251 adipor1,LOC107749488,LOC107385668 other downstream 614303 23054633 ~ 23058805 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other downstream 869466 22786163 ~ 22803642 (-)
amhr2 NA other downstream 950203 22709549 ~ 22722905 (-)
alas1 alas1,LOC106583798 other downstream 1310650 22349347 ~ 22362458 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other downstream 1821466 21846969 ~ 21851642 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other upstream 358855 24039246 ~ 24105898 (-)
G192815 mdm4 other upstream 1531284 25211675 ~ 25217550 (-)
LOC111195415 tfeb other upstream 2194519 25874910 ~ 25878653 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other upstream 3030862 26711253 ~ 26724106 (-)
G193097 NA other upstream 3351272 27031663 ~ 27033089 (-)

Expression


Co-expression Network