nfs1 (nfs1,LOC107601922,LOC107559867)


Basic Information

Item Value
gene id nfs1
gene name nfs1,LOC107601922,LOC107559867
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 23609253 ~ 23622118 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007234740.3
TAAGCGccgctgtgtgtgagtgaggttgGTGGTGTGGTGGTTCGTCCCTCAGTACCGGAGCGGTGTGGATTAGAGCCGCTGTTACCGCGGGGTTCAGCCCCTTCCTGCTGCGGGAGATTACTGATACGGGGTTATTTATCGCTCCGCGGAGCAGTTCAGTACTTTTACTAGAGGAATAAACCGGTGTTTTGAAAAGATGATGAGCAGGAGCGTCACGAGGAAGCTTCTGGGCTCCATACGCGGCGTTTCTACCAGCGCCCGCCTGAACTGCCCGGGGGCTCCAGCCTCCGCTCCGGCCGCGCAGAGAGGCAGAGAGCTGATTAAGAGTAGAGAGCTGGAGAAAGATGAGCTTCGGCCGCTCTATATGGACTTCCAGGCAACAACACCAATGGATCCTCGAGTTCTGGACGCCATGCTTCCCTACCAAGTGAATTACTACGGCAATCCGCACTCGAGGACACACGCTTACGGCTGGGAAAGCGAAACTGCGATGGAAAAAGCGAGAAAACAAGTAGCTGATCTTATTGGGGCCGATCCACGAGAGATTGTGTTCACCAGCGGCGCCACAGAGTCCAACAATATGTCAATCAAAGGTGTGGCACGGTTCTATAAGGCAAGGAAGAAGCATGTCATCACCACACAGACGGAGCACAAGTGTGTGCTGGACTCCTGTCGTGTTCTGGAATCTGAGGGCTTTGATGTAACATACATGCCTGTTAAAAGCAATGGATTAATTGATCTACAGCAACTCGTGGAAACGATACGTCCAGATACCAGCCTGGTTTCGGTGATGACTGTCAACAACGAGATCGGAGTCAAACAGCCAATTAAAGAGATTGGTACGATATGTAGGTCCAAGAACGTGTTCTTCCACACTGACGCTGCCCAGGCTGTCGGAAAAATCCCCATCAACGTCTCTGAGCTGAAAGTGGATCTAATGTCCATCAGTGGGCACAAAATATACGGACCCAAAGGTGTTGGGGCGCTGTTCGTGAGGAGGAGGCCGAGGGTTAGGATCGAGCCGCTGCAGAGTGGAGGAGGGCAGGAGAGGGGGCTGCGCTCTGGAACTGTACCCACCCCCCTGGCAGTGGGACTGGGGGCTGCCTGTGAGCTCGCCCAGCAAGAGATGGAGtatgatcATGCCAGAGTGTCCATGCTCGCTACTCGTCTTGTGCAGAAGATAATGACAGAGATTCCGGATGTGGTGATGAATGGAGATCCAGATCAGAGATACCCAGGATGCATCAACTTGTCGTTTGCGTATGTAGAGGGGGAGAGTTTGCTGATGGCGTTGAAGGATGTTGCATTGTCGTCTGGCAGTGCGTGTACCTCTGCTTCCCTGGAGCCGTCGTATGTACTGAGGGCGATAGGAACAGATGAGGATCTGGCTCATTCCTCCATCAGgTTTGGAATTGGGCGTTTTACCACTGAGGAAGAAGTGGACTACACCGCGGAGAAGTGCATTCAGCAGGTTAGACGACTACGAGAGATGAGTCCTCTGTGGGAGATGGTGCAGGAGGGCATTGATCTGAAGAGTATTAAATGGACCCAGCACTGATGATCTCACACTCTCGGGATGAGATGGAACAGGATCACAGTTCAAATACTTTTACAGAGCTTGTTTAGAATGCCGAAGACTTCTTTcctcgaaaaaaaaaacacgcacaATTTTATTACTTGATTTTGAGGATTGATTATGTTCGTTTGGCTGGTGGAGACTAGTTTGGCTTGTTTCATACTAGAGCGCATtgcttcttgtttgtttgtttgtttgtttgtttttgagttGTTGAAGTTGCTGGAATTGCAGagattctttctttatttccacATTCTTCAGCTGAAGTTCTCAGATTTTACCACAGAACACGTGAGTGAGGGAGTGTTTGGACAGTGTTCTGTAGCTTTGTCTAAATTACTACATAATATTGCTGAAACAATCCCGTGTGTTGTCTGTGTAGTCTGCCTGTCTATTCAGCTCAGATTACACCTTCATCAGAATTAGAGCTTCAGATACTCCTGTTACATAATCTGTGATGTATTTTGCATTCTGTGTATACATTCAGATAGTTAAATATGAGTTGTATATGTATCAGTTGTTGTCATGCAAAAGCCTAATatcaccaaaaaacaaaactgtcaaTGGAAGTTATGCCAGGTTCATACTACACAGTTTTTGCACGTTTTTTTAGTCCTTGTTGCCTACAAAAACTGTGCTCAGAGGCAAATCGGGCAAAAAAAACTCTCAGTGCTTGCACAGTCACAtagtgtgaactactgaaagacGACTGATTGCAGACGAGTCACAGATGCCTGGCATGCTAGATATCAGAGAGAACTACGGGTCCAAAACACACACCCCCTGCTTTACCACAGCCGTTTTTGAAGAGTgaagagtctgaccactttctgTTTCCCTGTTAGATTATGAAATCATTGTTTACCTCTAGAGGGAGCCTACGAGTGAGTGCTGTATAAATCGGTGAATGAGGCTAAAAGATAAAAGTTTAGAATTTAAATtaagtatttctttaattttgtaaagtacaataatataatttacacaaaaaaagcaaagaatgtGTGCCTGTATACTTCAGTTTATCTGAACTAGAATTTCTGCTACTGCCAGCTGATTGGTTAGCGAGCTAATCCTAGTGATACAggtaaagcatgtttaaaacgaTAAAGTCTGTGtttctaaaacatttaatatagttcTGCTTTGAGGACAAAGGTATATATTTCGATTACAGTGATTACAGCTCGACTGGCGACTCAAAacattgtgtagtgtgaacctggaaTTATCTATTATGTCAAAGTATCTTATTCATTTAAGTCGTTTTGAAGCATTTGTATTGGTCCATGAAAGTTTGAGTGCCAGATTGAAGTAAAGCTGGACGTAAAAGGTTTTTTTGCGTGAACGCAACTGCTATGATCACAGCAGTACCAAGAACAAATGTTATTGTTGCTCAATGAAAGATTTAAGAAATTTGTATTTATGTAAGAAGAGATCATACCTTAAATGGTACCATTAGGAGAAATATGAATACAATGATGTAAAGGCTAGTAGTCTTAAGGACTGTGTAAAGACTTTTATTTAGCCTCATTTATAATATGGgtgttgtttttatgtttcacAGTAAAACTGACTTCAGtaggtgtgttgtgtgtaaacaTGTTCACTGTTCATTCCAGTCACAGAAAACATCTCgtattaataaaaactataaagacAGA
>XM_022682676.1
TAAGCGccgctgtgtgtgagtgaggttgGTGGTGTGGTGGTTCGTCCCTCAGTACCGGAGCGGTGTGGATTAGAGCCGCTGTTACCGCGGGGTTCAGCCCCTTCCTGCTGCGGGAGATTACTGATACGGGGTTATTTATCGCTCCGCGGAGCAGTTCAGTACTTTTACTAGAGGAATAAACCGGTGTTTTGAAAAGATGATGAGCAGGAGCGTCACGAGGAAGCTTCTGGGCTCCATACGCGGCGTTTCTACCAGCGCCCGCCTGAACTGCCCGGGGGCTCCAGCCTCCGCTCCGGCCGCGCAGAGAGGCAGAGAGCTGATTAAGAGTAGAGAGCTGGAGAAAGATGAGCTTCGGCCGCTCTATATGGACTTCCAGGCAACAACACCAATGGATCCTCGAGTTCTGGACGCCATGCTTCCCTACCAAGTGAATTACTACGGCAATCCGCACTCGAGGACACACGCTTACGGCTGGGAAAGCGAAACTGCGATGGAAAAAGCGAGAAAACAAGTAGCTGATCTTATTGGGGCCGATCCACGAGAGATTGTGTTCACCAGCGGCGCCACAGAGTCCAACAATATGTCAATCAAAGGTGTGGCACGGTTCTATAAGGCAAGGAAGAAGCATGTCATCACCACACAGACGGAGCACAAGTGTGTGCTGGACTCCTGTCGTGTTCTGGAATCTGAGGGCTTTGATGTAACATACATGCCTGTTAAAAGCAATGGATTAATTGATCTACAGCAACTCGTGGAAACGATACGTCCAGATACCAGCCTGGTTTCGGTGATGACTGTCAACAACGAGATCGGAGTCAAACAGCCAATTAAAGAGATTGGTACGATATGTAGGTCCAAGAACGTGTTCTTCCACACTGACGCTGCCCAGGCTGTCGGAAAAATCCCCATCAACGTCTCTGAGCTGAAAGTGGATCTAATGTCCATCAGTGGGCACAAAATATACGGACCCAAAGGTGTTGGGGCGCTGTTCGTGAGGAGGAGGCCGAGGGTTAGGATCGAGCCGCTGCAGAGTGGAGGAGGGCAGGAGAGGGGGCTGCGCTCTGGAACTGTACCCACCCCCCTGGCAGTGGGACTGGGGGCTGCCTGTGAGCTCGCCCAGCAAGAGATGGAGtatgatcATGCCAGAGTGTCCATGCTCGCTACTCGTCTTGTGCAGAAGATAATGACAGAGATTCCGGATGTGGTGATGAATGGAGATCCAGATCAGAGATACCCAGGATGCATCAACTTGTCGTTTGCGTATGTAGAGGGGGAGAGTTTGCTGATGGCGTTGAAGGATGTTGCATTGTCGTCTGGCAGTGCGTGTACCTCTGCTTCCCTGGAGCCGTCGTATGTACTGAGGGCGATAGGAACAGATGAGGATCTGGCTCATTCCTCCATCAGgTTTGGAATTGGGCGTTTTACCACTGAGGAAGAAGTGGACTACACCGCGGAGAAGTGCATTCAGCAGGTTAGACGACTACGAGAGATGAGTCCTCTGTGGGAGATGGTGCAGGAGGGCATTGATCTGAAGAGTATTAAATGGACCCAGCACTGATGATCTCACACTCTCGGGATGAGATGGAACAGGATCACAGTTCAAAGACTTCTTTcctcgaaaaaaaaaacacgcacaATTTTATTACTTGATTTTGAGGATTGATTATGTTCGTTTGGCTGGTGGAGACTAGTTTGGCTTGTTTCATACTAGAGCGCATtgcttcttgtttgtttgtttgtttgtttgtttttgagttGTTGAAGTTGCTGGAATTGCAGagattctttctttatttccacATTCTTCAGCTGAAGTTCTCAGATTTTACCACAGAACACGTGAGTGAGGGAGTGTTTGGACAGTGTTCTGTAGCTTTGTCTAAATTACTACATAATATTGCTGAAACAATCCCGTGTGTTGTCTGTGTAGTCTGCCTGTCTATTCAGCTCAGATTACACCTTCATCAGAATTAGAGCTTCAGATACTCCTGTTACATAATCTGTGATGTATTTTGCATTCTGTGTATACATTCAGATAGTTAAATATGAGTTGTATATGTATCAGTTGTTGTCATGCAAAAGCCTAATatcaccaaaaaacaaaactgtcaaTGGAAGTTATGCCAGGTTCATACTACACAGTTTTTGCACGTTTTTTTAGTCCTTGTTGCCTACAAAAACTGTGCTCAGAGGCAAATCGGGCAAAAAAAACTCTCAGTGCTTGCACAGTCACAtagtgtgaactactgaaagacGACTGATTGCAGACGAGTCACAGATGCCTGGCATGCTAGATATCAGAGAGAACTACGGGTCCAAAACACACACCCCCTGCTTTACCACAGCCGTTTTTGAAGAGTgaagagtctgaccactttctgTTTCCCTGTTAGATTATGAAATCATTGTTTACCTCTAGAGGGAGCCTACGAGTGAGTGCTGTATAAATCGGTGAATGAGGCTAAAAGATAAAAGTTTAGAATTTAAATtaagtatttctttaattttgtaaagtacaataatataatttacacaaaaaaagcaaagaatgtGTGCCTGTATACTTCAGTTTATCTGAACTAGAATTTCTGCTACTGCCAGCTGATTGGTTAGCGAGCTAATCCTAGTGATACAggtaaagcatgtttaaaacgaTAAAGTCTGTGtttctaaaacatttaatatagttcTGCTTTGAGGACAAAGGTATATATTTCGATTACAGTGATTACAGCTCGACTGGCGACTCAAAacattgtgtagtgtgaacctggaaTTATCTATTATGTCAAAGTATCTTATTCATTTAAGTCGTTTTGAAGCATTTGTATTGGTCCATGAAAGTTTGAGTGCCAGATTGAAGTAAAGCTGGACGTAAAAGGTTTTTTTGCGTGAACGCAACTGCTATGATCACAGCAGTACCAAGAACAAATGTTATTGTTGCTCAATGAAAGATTTAAGAAATTTGTATTTATGTAAGAAGAGATCATACCTTAAATGGTACCATTAGGAGAAATATGAATACAATGATGTAAAGGCTAGTAGTCTTAAGGACTGTGTAAAGACTTTTATTTAGCCTCATTTATAATATGGgtgttgtttttatgtttcacAGTAAAACTGACTTCAGtaggtgtgttgtgtgtaaacaTGTTCACTGTTCATTCCAGTCACAGAAAACATCTCgtattaataaaaactataaagacAGA

Function

symbol description
nfs1 Predicted to enable cysteine desulfurase activity. Predicted to be involved in iron-sulfur cluster assembly. Predicted to act upstream of or within [2Fe-2S] cluster assembly. Predicted to be active in cytosol; mitochondrion; and nucleus. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency. Orthologous to human NFS1 (NFS1 cysteine desulfurase).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006534 cysteine metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0031071 cysteine desulfurase activity molecular_function

KEGG:

id description
K04487 iscS, NFS1; cysteine desulfurase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007234740.3 True 3243 mRNA 0.44 13 23609253 23622118
XM_022682676.1 False 3212 mRNA 0.44 14 23609253 23622118

Neighbor

gene id symbol gene type direction distance location
LOC103047010 syt6,LOC107727826,LOC107560238,LOC107655078 coding downstream 327234 23208885 ~ 23282019 (-)
LOC103045076 gpr25 coding downstream 446834 23159668 ~ 23162419 (-)
c22h1orf106 LOC108410711,LOC107727857,LOC107655074 coding downstream 464845 23104254 ~ 23144408 (-)
rnpep rnpep coding downstream 510689 23087526 ~ 23098564 (-)
LOC103045443 LOC108410710,LOC107727873,LOC107560790,LOC107685706,LOC107749489 coding downstream 527125 23074119 ~ 23082128 (-)
LOC103042624 rbm39,LOC107655082,LOC107727761,LOC107602070 coding upstream 2792 23624910 ~ 23635826 (-)
LOC103041805 gem,rem1,LOC108411381,LOC107727768,LOC107655086,LOC107727184,LOC107685743,LOC107554936 coding upstream 26148 23648266 ~ 23660292 (-)
LOC103042306 NA coding upstream 50990 23673108 ~ 23680391 (-)
LOC103041505 pnp4a,LOC103041505,LOC108411380,LOC107727193,LOC107685744,LOC107655042,LOC107727769,LOC107559547 coding upstream 60091 23682209 ~ 23696247 (-)
LOC111195461 NA coding upstream 176640 23798758 ~ 23801417 (-)
G192439 dvl1,LOC108411373,LOC107685713,LOC107560111,LOC107749512,LOC107655081,LOC107727776 non-coding downstream 2222 23602319 ~ 23607031 (-)
G192428 NA non-coding downstream 50077 23544535 ~ 23559176 (-)
G192365 NA non-coding downstream 279940 23329074 ~ 23329313 (-)
G192336 NA non-coding downstream 384650 23216176 ~ 23224603 (-)
G192335 NA non-coding downstream 385884 23215590 ~ 23223369 (-)
G192484 NA non-coding upstream 254517 23876635 ~ 23884538 (-)
G192574 NA non-coding upstream 370078 23992196 ~ 24049734 (-)
G192578 NA non-coding upstream 433176 24055294 ~ 24055585 (-)
G192579 NA non-coding upstream 460686 24082804 ~ 24083308 (-)
G192589 NA non-coding upstream 638516 24260634 ~ 24262555 (-)
G192251 adipor1,LOC107749488,LOC107385668 other downstream 550448 23054633 ~ 23058805 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other downstream 805611 22786163 ~ 22803642 (-)
amhr2 NA other downstream 886348 22709549 ~ 22722905 (-)
alas1 alas1,LOC106583798 other downstream 1246795 22349347 ~ 22362458 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other downstream 1757611 21846969 ~ 21851642 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other upstream 417128 24039246 ~ 24105898 (-)
G192815 mdm4 other upstream 1589557 25211675 ~ 25217550 (-)
LOC111195415 tfeb other upstream 2252792 25874910 ~ 25878653 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other upstream 3089135 26711253 ~ 26724106 (-)
G193097 NA other upstream 3409545 27031663 ~ 27033089 (-)

Expression


Co-expression Network