Gene
RNA
| Item | Value |
|---|---|
| gene id | G71623 |
| gene name | NA |
| gene type | misc |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000012 |
| NCBI id | null |
| chromosome length | 13770000 |
| location | 5813517 ~ 5816605 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU81634 | False | 1053 | TUCP | 0.49 | 6 | 5813517 | 5816605 |
| TU81636 | True | 460 | lncRNA | 0.47 | 2 | 5813517 | 5814949 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000012_05748899_05754466 | ERLEC1 | coding | upstream | 58263 | 5748899 ~ 5755254 (+) |
| CI01000012_05708007_05735678 | MAP3K4 | coding | upstream | 77532 | 5708007 ~ 5735985 (+) |
| CI01000012_05659039_05669397 | NA | coding | upstream | 143933 | 5659039 ~ 5669584 (+) |
| CI01000012_05648602_05650699 | MYCLA | coding | upstream | 162320 | 5648602 ~ 5651197 (+) |
| CI01000012_05565127_05567009 | NA | coding | upstream | 246287 | 5564939 ~ 5567230 (+) |
| CI01000012_05856793_05862577 | NA | coding | downstream | 41367 | 5856316 ~ 5862642 (+) |
| CI01000012_05909453_05916000 | MEMO1 | coding | downstream | 94504 | 5909453 ~ 5916174 (+) |
| CI01000012_05923216_05928055 | SRD5A2B | coding | downstream | 107436 | 5922385 ~ 5929186 (+) |
| CI01000012_05946986_05984551 | SLX4IP | coding | downstream | 132037 | 5946986 ~ 5985959 (+) |
| CI01000012_06156417_06175135 | NA | coding | downstream | 339898 | 6154847 ~ 6175521 (+) |
| G71622 | NA | non-coding | upstream | 2290 | 5810037 ~ 5811227 (+) |
| G71619 | NA | non-coding | upstream | 6732 | 5806521 ~ 5806785 (+) |
| G71618 | NA | non-coding | upstream | 7454 | 5805801 ~ 5806063 (+) |
| G71585 | NA | non-coding | upstream | 44748 | 5766075 ~ 5768769 (+) |
| G71595 | NA | non-coding | upstream | 73833 | 5739016 ~ 5739684 (+) |
| G71637 | NA | non-coding | downstream | 28115 | 5843064 ~ 5843554 (+) |
| G71668 | NA | non-coding | downstream | 106244 | 5921193 ~ 5921399 (+) |
| G72484 | NA | non-coding | downstream | 212745 | 6027694 ~ 6027911 (+) |
| G72499 | NA | non-coding | downstream | 242275 | 6057224 ~ 6057425 (+) |
| G72516 | NA | non-coding | downstream | 331248 | 6146197 ~ 6146540 (+) |
| G71548 | NA | other | upstream | 252084 | 5550493 ~ 5561433 (+) |
| G71221 | NA | other | upstream | 273061 | 5538525 ~ 5540456 (+) |
| G71218 | NA | other | upstream | 275133 | 5535852 ~ 5538384 (+) |
| G71199 | NA | other | upstream | 396732 | 5413250 ~ 5416785 (+) |
| CI01000012_05177587_05180517 | SRSF5A | other | upstream | 632547 | 5176895 ~ 5180970 (+) |
| CI01000012_07806089_07811902 | BEND3 | other | downstream | 1991154 | 7805248 ~ 7811902 (+) |
| G73578 | NA | other | downstream | 2551857 | 8366806 ~ 8367627 (+) |
| CI01000012_10223957_10235955 | NA | other | downstream | 4407006 | 10223697 ~ 10236276 (+) |
| G75533 | NA | other | downstream | 5329868 | 11144817 ~ 11145739 (+) |
