LOC103047032 (si:dkey-183j2.10,LOC108444168,LOC107565113,LOC107685669,LOC107727882,LOC107749458,LOC107597793,LOC107691358)


Basic Information

Item Value
gene id LOC103047032
gene name si:dkey-183j2.10,LOC108444168,LOC107565113,LOC107685669,LOC107727882,LOC107749458,LOC107597793,LOC107691358
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 269750 ~ 278183 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237534.3
CTCCTCCCCCTGAAATCATTGGCTTTCTGTGATCCTCATCAGTGTCGTCTCCTCTGTGCTCTCTCAGTCTGAGCCGACCCGGTGTGGAGTAACTCTACAGGCACGATGGTGTTTTTCAACAGCATGTGGACCGTGCTAGCTTTCATCACATTCGCTACAGTCCTGCTGCTATCAAACTCTTGCTCTGCAGcAAAGTCAGAGCTGACAGTAACTACAATAAAGCAAGACCCGTACACCATGCTGAAGGGCTCTCAGCTGGAGGGATACTGTATGGACCTGCTGTCTGAATTAGCCAAGAAACTGGGCTTCAAGTATAAAGTTCATCTGGTGAAAGACGGGTCGTACGGCCGGCTGGACGAGAGTGGAAACTGGAATGGGATGATTGGAGAGGTGGTGAGGGGGGAAGCGGATCTTGCCGTAGCTCCTCTAACGCTGACCGCAGCTCGAGAGAAGGCAGTAGGAATGACCAAACCCTACATGCAGACGGGTATCAGCATCCTCATGCGGCGGGACATCACCTCAGAGGATTCCAGCATGTTCGACTTCCTCAGTCCGTTTTCTGGAGAGACCTGGTTCGGGATCCTCGTCGCATACATCCTGACCGCAGTCTGCATCTGCGTCGTAGCCAGAGTGAGCCCTTGTGAATGGAGTCAGCCTGAGAGCGAGCAGAACCCCTTCACCCTCCTGCACAGTCTGTGGTATATCGCCGGAGCTCTCAGCCTGCAAGGTGCAGGTCCTCACCCCAGGTCTCCATCCGGCCGTGTGGTCAGCTGTACTTGGTGGCTCTTTGCCGTGGTGCTGCTGGCCTGCTACTTCTCCAACCTGAGCTCCAACCAAAGCTCAGACTCTTCACACCTCATGATAAAGGGCTTTGAGGATCTGGCCAATCAGGACATAATCGAATATGGAACACTGGCTGGATCTTCAACACTGGCTTTCTTTAAGAATTCAAATAATCCTTCCTACCGCCGCATCTATGAGCACATGGAGAGACGGAAGAGTTTTGTATCATCAATGGATGAAGGTGTTCAGAAGGCACGGGATGGAAACTTTGCTTTTATTGGGGAGTCAGTATCGCTGGACCTCGCTGTGGCTCGTTACTGTGAGCTGGTTCGAGCCCATGAGGTTATTGGAATGAGAGGCTACAGCATCGTGACTCCTCTGAACTTCCCCATGCTGAAGAACCTGAGCGTAGCCATCCTGCAGCTGAGTGAGGCAGGTGAGCTGGCCTATCTGCGCAGTAAATGGTGGGCCAGCAGCTGCATGGCTCAAAGTGCTAAAGGTTCATCACTAAGGGCCCAAAGCATGAAGGGAATTTTCCTGGTGCTCGCTGTGGGTCTGGGGCTCGGGGTGCTGCTGGCTCTGCTGGAGCTCACCTCCAAATCCCGGAGCAGAGCCCAGGAGCAAAAGAAGTCCTGCTGCTCTGTTCTGACCCAGGAGCTCAGTCAGCGTCTGAGAACAAACAGCCCAAAGCGAGAGCCGGAAACCTCCGAGAAAAACAAGGCCTGAAGTTCTCGCTTCCTTAATTTACTAATTACAGCCGGGACCCTTTCACCGCCCAGAACAGAAACTCTATACCTGTAAAAGCCTAACTATCTGCACTGTGGCATAGATTCATATTAGCAGTAGTACATACCTCAAGCTGTACATCAGTAATTAGAGTTTATACACTCTCTAAGTGTGGGAGGAAACCTGGGGGACTAATCAAAAGcgactaatataaataaaatatacctgCTCTAATCCTGTATACCTAACCTCTCATCTTCTCTTGTATGTTCAAATATAATGCACTTTAgtaatcaaatatatatttaaatcattttatagaAGTTATGAATCTATATCAAAAGTGCCTATATACTATAATAAGATTCAAGGAGTTCAGACAGAATGTGTTTATCTGTGCATTGTTTCATCTTAAAcacatcattaaaaacatttacatcaCACAAGATAATGTACAAAAAGCTCCTTACAGTAACAACTCTGGCACATtgtaattaatgaaataataaataaaatttaaccaAAA
>XM_007237535.3
CTCCTCCCCCTGAAATCATTGGCTTTCTGTGATCCTCATCAGTGTCGTCTCCTCTGTGCTCTCTCAGTCTGAGCCGACCCGGTGTGGAGTAACTCTACAGGCACGATGGTGTTTTTCAACAGCATGTGGACCGTGCTAGCTTTCATCACATTCGCTACAGTCCTGCTGCTATCAAACTCTTGCTCTGCAGcAAAGTCAGAGCTGACAGTAACTACAATAAAGCAAGACCCGTACACCATGCTGAAGGGCTCTCAGCTGGAGGGATACTGTATGGACCTGCTGTCTGAATTAGCCAAGAAACTGGGCTTCAAGTATAAAGTTCATCTGGTGAAAGACGGGTCGTACGGCCGGCTGGACGAGAGTGGAAACTGGAATGGGATGATTGGAGAGGTGGTGAGGGGGGAAGCGGATCTTGCCGTAGCTCCTCTAACGCTGACCGCAGCTCGAGAGAAGGCAGTAGGAATGACCAAACCCTACATGCAGACGGGTATCAGCATCCTCATGCGGCGGGACATCACCTCAGAGGATTCCAGCATGTTCGACTTCCTCAGTCCGTTTTCTGGAGAGACCTGGTTCGGGATCCTCGTCGCATACATCCTGACCGCAGTCTGCATCTGCGTCGTAGCCAGAGTGAGCCCTTGTGAATGGAGTCAGCCTGAGAGCGAGCAGAACCCCTTCACCCTCCTGCACAGTCTGTGGTATATCGCCGGAGCTCTCAGCCTGCAAGGTGCAGGTCCTCACCCCAGGTCTCCATCCGGCCGTGTGGTCAGCTGTACTTGGTGGCTCTTTGCCGTGGTGCTGCTGGCCTGCTACTTCTCCAACCTGAGCTCCAACCAAAGCTCAGACTCTTCACACCTCATGATAAAGGGCTTTGAGGATCTGGCCAATCAGGACATAATCGAATATGGAACACTGGCTGGATCTTCAACACTGGCTTTCTTTAAGAATTCAAATAATCCTTCCTACCGCCGCATCTATGAGCACATGGAGAGACGGAAGAGTTTTGTATCATCAATGGATGAAGGTGTTCAGAAGGCACGGGATGGAAACTTTGCTTTTATTGGGGAGTCAGTATCGCTGGACCTCGCTGTGGCTCGTTACTGTGAGCTGGTTCGAGCCCATGAGGTTATTGGAATGAGAGGCTACAGCATCGTGACTCCTCTGAACTTCCCCATGCTGAAGAACCTGAGCGTAGCCATCCTGCAGCTGAGTGAGGCAGAAGTCCTGCTGCTCTGTTCTGACCCAGGAGCTCAGTCAGCGTCTGAGAACAAACAGCCCAAAGCGAGAGCCGGAAACCTCCGAGAAAAACAAGGCCTGAAGTTCTCGCTTCCTTAATTTACTAATTACAGCCGGGACCCTTTCACCGCCCAGAACAGAAACTCTATACCTGTAAAAGCCTAACTATCTGCACTGTGGCATAGATTCATATTAGCAGTAGTACATACCTCAAGCTGTACATCAGTAATTAGAGTTTATACACTCTCTAAGTGTGGGAGGAAACCTGGGGGACTAATCAAAAGcgactaatataaataaaatatacctgCTCTAATCCTGTATACCTAACCTCTCATCTTCTCTTGTATGTTCAAATATAATGCACTTTAgtaatcaaatatatatttaaatcattttatagaAGTTATGAATCTATATCAAAAGTGCCTATATACTATAATAAGATTCAAGGAGTTCAGACAGAATGTGTTTATCTGTGCATTGTTTCATCTTAAAcacatcattaaaaacatttacatcaCACAAGATAATGTACAAAAAGCTCCTTACAGTAACAACTCTGGCACATtgtaattaatgaaataataaataaaatttaaccaAAA
>XM_022682174.1
AtgctaaatataatgtaatgtaatgtaaaaacatgCAGTTAACACAACTTAGCTCAAATGTCACTGAATGCTCTCTCTACCAGCTAATGTGATCCTAACCCTAAAATACTCTGAGGAAACTGAGTCCAGATGGATCTGAATCGTAGGATAAAGAAAAGcAAAGTCAGAGCTGACAGTAACTACAATAAAGCAAGACCCGTACACCATGCTGAAGGGCTCTCAGCTGGAGGGATACTGTATGGACCTGCTGTCTGAATTAGCCAAGAAACTGGGCTTCAAGTATAAAGTTCATCTGGTGAAAGACGGGTCGTACGGCCGGCTGGACGAGAGTGGAAACTGGAATGGGATGATTGGAGAGGTGGTGAGGGGGGAAGCGGATCTTGCCGTAGCTCCTCTAACGCTGACCGCAGCTCGAGAGAAGGCAGTAGGAATGACCAAACCCTACATGCAGACGGGTATCAGCATCCTCATGCGGCGGGACATCACCTCAGAGGATTCCAGCATGTTCGACTTCCTCAGTCCGTTTTCTGGAGAGACCTGGTTCGGGATCCTCGTCGCATACATCCTGACCGCAGTCTGCATCTGCGTCGTAGCCAGAGTGAGCCCTTGTGAATGGAGTCAGCCTGAGAGCGAGCAGAACCCCTTCACCCTCCTGCACAGTCTGTGGTATATCGCCGGAGCTCTCAGCCTGCAAGGTGCAGGTCCTCACCCCAGGTCTCCATCCGGCCGTGTGGTCAGCTGTACTTGGTGGCTCTTTGCCGTGGTGCTGCTGGCCTGCTACTTCTCCAACCTGAGCTCCAACCAAAGCTCAGACTCTTCACACCTCATGATAAAGGGCTTTGAGGATCTGGCCAATCAGGACATAATCGAATATGGAACACTGGCTGGATCTTCAACACTGGCTTTCTTTAAGAATTCAAATAATCCTTCCTACCGCCGCATCTATGAGCACATGGAGAGACGGAAGAGTTTTGTATCATCAATGGATGAAGGTGTTCAGAAGGCACGGGATGGAAACTTTGCTTTTATTGGGGAGTCAGTATCGCTGGACCTCGCTGTGGCTCGTTACTGTGAGCTGGTTCGAGCCCATGAGGTTATTGGAATGAGAGGCTACAGCATCGTGACTCCTCTGAACTTCCCCATGCTGAAGAACCTGAGCGTAGCCATCCTGCAGCTGAGTGAGGCAGGTGAGCTGGCCTATCTGCGCAGTAAATGGTGGGCCAGCAGCTGCATGGCTCAAAGTGCTAAAGGTTCATCACTAAGGGCCCAAAGCATGAAGGGAATTTTCCTGGTGCTCGCTGTGGGTCTGGGGCTCGGGGTGCTGCTGGCTCTGCTGGAGCTCACCTCCAAATCCCGGAGCAGAGCCCAGGAGCAAAAGAAGTCCTGCTGCTCTGTTCTGACCCAGGAGCTCAGTCAGCGTCTGAGAACAAACAGCCCAAAGCGAGAGCCGGAAACCTCCGAGAAAAACAAGGCCTGAAGTTCTCGCTTCCTTAATTTACTAATTACAGCCGGGACCCTTTCACCGCCCAGAACAGAAACTCTATACCTGTAAAAGCCTAACTATCTGCACTGTGGCATAGATTCATATTAGCAGTAGTACATACCTCAAGCTGTACATCAGTAATTAGAGTTTATACACTCTCTAAGTGTGGGAGGAAACCTGGGGGACTAATCAAAAGcgactaatataaataaaatatacctgCTCTAATCCTGTATACCTAACCTCTCATCTTCTCTTGTATGTTCAAATATAATGCACTTTAgtaatcaaatatatatttaaatcattttatagaAGTTATGAATCTATATCAAAAGTGCCTATATACTATAATAAGATTCAAGGAGTTCAGACAGAATGTGTTTATCTGTGCATTGTTTCATCTTAAAcacatcattaaaaacatttacatcaCACAAGATAATGTACAAAAAGCTCCTTACAGTAACAACTCTGGCACATtgtaattaatgaaataataaataaaatttaaccaAAA

Function

symbol description
si:dkey-183j2.10 Predicted to enable ionotropic glutamate receptor activity. Predicted to act upstream of or within ion transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane.

NR:

description
PREDICTED: probable glutamate receptor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237534.3 True 2035 mRNA 0.48 10 269750 278183
XM_007237535.3 False 1844 mRNA 0.47 10 269750 278183
XM_022682174.1 False 2003 mRNA 0.47 9 271199 278183

Neighbor

gene id symbol gene type direction distance location
LOC103046213 mon1bb,LOC108444170,LOC107564673,LOC107727858,LOC107691359,LOC107749456 coding upstream 20863 243272 ~ 248887 (+)
LOC111195348 grm6b,LOC108444164,LOC107564587,LOC107691362,LOC107749460,LOC107597884 coding upstream 28025 221827 ~ 241725 (+)
LOC103044480 si:dkey-13a21.13,LOC108444173 coding upstream 51290 200368 ~ 218460 (+)
LOC103045901 LOC108440326,LOC108255043,LOC107727863,LOC107685673,LOC107598432 coding upstream 79393 183848 ~ 190357 (+)
LOC103025463 tfe3b,tfe3,LOC108440327,LOC105912251,LOC106582876 coding upstream 95268 167342 ~ 174482 (+)
lactbl1 lactbl1,lactbl1b,LOC107727874,LOC106582988 coding downstream 164281 442464 ~ 457409 (+)
LOC111195351 LOC108439503 coding downstream 191880 470063 ~ 472044 (+)
smarcd1 smarcd1 coding downstream 197212 475395 ~ 492764 (+)
gpd1 gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423,LOC100136539 coding downstream 216890 495073 ~ 505040 (+)
bcdin3d NA coding downstream 263147 541330 ~ 543530 (+)
G186264 NA non-coding upstream 15720 221116 ~ 254030 (+)
G186241 NA non-coding upstream 90972 177894 ~ 178778 (+)
LOC111195451 NA non-coding upstream 155404 113390 ~ 114346 (+)
LOC103041000 NA non-coding upstream 160576 107081 ~ 109174 (+)
G186227 NA non-coding upstream 171411 74730 ~ 98339 (+)
G186279 NA non-coding downstream 15272 293455 ~ 294062 (+)
G186368 NA non-coding downstream 35777 313960 ~ 340818 (+)
G186375 NA non-coding downstream 144720 422903 ~ 423811 (+)
G186385 NA non-coding downstream 217521 495704 ~ 498408 (+)
G186401 NA non-coding downstream 280769 558952 ~ 563539 (+)
G186231 NA other upstream 154663 107396 ~ 115087 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other downstream 232392 510575 ~ 538216 (+)
podxl2 NA other downstream 328650 606833 ~ 1095337 (+)
G186880 lmcd1 other downstream 2702314 2980497 ~ 3002015 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other downstream 3114204 3392387 ~ 3394843 (+)
p3h1 NA other downstream 5501708 5779891 ~ 5798979 (+)

Expression


Co-expression Network