gdf11 (gdf11,LOC108431504,LOC107385665,LOC101480554,LOC103359380)


Basic Information

Item Value
gene id gdf11
gene name gdf11,LOC108431504,LOC107385665,LOC101480554,LOC103359380
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 13493576 ~ 13533622 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007239755.3
TAAAGGGGGGCTCTCCAGGCGCGTTTGTACACTTGTCAGTGACAAcaccaaaaaaagagaaacaccCCCTCTCCAAAACcggacaaaaagaaaaaaaaacgtgaccAGGCTCCCTCCAGCTTCCCAAGTGTCAGAACCAGCGAGAACCAGCATCCCACCAGATCTTCCTCCACTAGGATGCACTGAAGGATCCTTGTCCAACTACTTTTGGACTCCTGTGGACTCGTCCTTTTGTTTGACCTCCATCCTGGTTGGTTATGGGAACTCACACTTGAAGGGGAAGAAGAGCGGTTTAGGCCGGCTTTCTGAGGACTCGCAGGACCCTACTCCATCTCCACCTTCTCCACCATCTGCTTCCACCCAAAGCCCACCCGGAGGTCCGCTTTGGTACCGGGTAGAACCGTAGCACAGCGCCATGGCGAGCTACAACTTTCTGCTGTGTCTCACAGTTCTGGTGGGGCTGGAACTCTCCGGCAGCGACCAGCCGGACTTCTCCATCCCCCCTGCCCGGGACGGGATGGGGTCCCGGGACTTGGATCTAGACCCACACCTCCACCCGCACCACCACCCGGACCCGGACCCGGACTCCCGGCTCTCCCTGATCGAGGTAGAGGACTCCGGAGCCCGCGACTGCTCCGCGTGCGTGTGGCGCGAGCAGAGCAAAGTGCTGCGTCTGGAGACCATCAAGTCCCAGATCCTCAGCAAGCTGCGGCTCAAGCAGGCGCCTAACATCAGCCGCGAGGTGGTCAACCAGCTGCTGCCCAAGGCGCCCCCCCTGCAGCAGCTCCTGGACCAGCACGACTTCCAGGGGGACGCGTCCCCGCAGGACGAGTTCGTGGAGGCGGACGAGTACCACGCCACCACCGAGTCGGTCATCACCATGGCCTCCGAGCCGGAACCCATCGTGCAGGTGGATGGGAAGCCCAGCTGCTGTTTCTTTAAGTTCAGTCCTAAGCTGATGTTCACCAAGGTTCTGAAAGCCCAGCTGTGGGTGTACCTTCGGCCCCTGCAGCAGACCTCCACCGTCTACCTGCAGATCCTCCGACTCAAACCCGTCACCGACCAGGGCAGCCGGCACATCCGGATCCGCTCGCTGAAGATCGAGCTGAACTCCAGGTCCGGCTACTGGCAGAGCATCGACTTCAAGCACGTCCTGCAGAACTGGTTCAAACAGCCGCACACCAACTGGGGCATCGACATTAACGCCTTCGACGAAAGCGGCAACGACCTGGCCGTGACCTCTCTGCGACCGGGAGAGGAAGGGCTGCAGCCGTTCTTAGAGGTGAAAGTTCTCGAGACCACCAAGCGCTCGCGGCGGAACCTGGGCCTGGACTGCGACGAGCACTCCACCGAGTCCCGCTGCTGCCGCTACCCACTCACAGTGGACTTTGAGGCTTTCGGGTGGGACTGGATCATCGCACCCAAGCGCTACAAAGCCAACTACTGCTCGGGCCAGTGTGAGTACATGTTCATGCAGAAGTACCCGCACACTCACCTGGTCCAGCACGCCAATCCCAGAGGCTCGGCGGGTCCATGCTGCACCCCCACCAAGATGTCTCCCATAAACATGCTCTACTTCAATGACAAGCAGCAGATCATCCACGGCAAGATTCCCGGCATGGTGGTGGACCGCTGCGGATGCTCTTAAACAAAAAGGCAGAACTCATTCAGGCTCAGCATTGTCCCACCTGCGTCATGGAGTATCTCCTGTTTTATTTCCTCGTCCCTCGTATCCTGGAAGAGCTACACGACACCTGAAGGAGGCCATCACATTAGTTCATCACTGTAGATCAACAGATAACAGATCATTCATTGTAAAGCTGTATAAACTGAGGCCTAGCGGCACAGATCCGTATGAATGCTTTCAGAGGGTGAGTGAGGACCAGCTGGTGAGAGAAAAGCGAGACGAAACAAATGGAGAAgagacaaaaatgtatatctttaatgttttagatttttaagctgtttgtttgtttgtttgatagtTATATAATAGATTATAAGATTTTTAAGCCTTATACTTCTTTATCCTTCTCTAGAAAGGGAAAACACAATACTGAGAAGCAAACATTTTATAGCACCATAAATACTGGGACAGTAAAGTCAGAATTGTCTTTTTAACATCTTTTGGGGGTGTTCCTTGTATGCAGTGGTCAGAACTTATCAAAAATGCTACAAGAAAGGTCAACCACTTGTAAGGTAAACCAGCAAACATGGATGCCCAAAGCTTATTGATGCTTATGGGGAGGACCTCATGCAGGAACCTCTTTATGGATCATACATTATAGGACACCTTCAGTGGTACTGAAAAGTCTGTTTGGGTGGTACAAGCAAGATCTACACAGTATTGGATATACATAGtattaggcaggtggttttaatgttatggcaaaTTGGCCTTGAATCAATTCAGTTCTGGCCCTATATAAGTTTTGTGAAATCCTGGAGTCCATGCTTCGATGGGACAGAGCTCTTTTGGTGGCACAAGGGTAATTACCATAGTAATTCATAGTAAGGCATGTAGTTTCAATATTATGGCTGATTTACATTGAGCTAATTTAGTCCTAAAACTtgactaaaaaagaaaaagtaggatccagtacttttttactACTAAGAGATATTGCCTAAAGAGTCACTTCACTGTCCCAATAATTATGGAAAGCTTTTCCTCtctaaacatgaaaaaaacatcCCTATCAATATATTTCAGATTACAAAATATTCCAATTttccacacataccccacaacCACAAACAAAATGATGCCAAAACACAAGGACAAGATAGTGCCGAAAGCATTCTAGGGTagaccaccaccatcatcaccaccccCCCACCCTCCTCTCTGCAAACGCATCTAGCACCCCAGTGCGAGATTCCCGAGAGTCCAGGCACCCTTTCATGGCCGCTTTGATCTTCCTTTTACTCGTGATCTTgtaaaaaagactaaaagaaaaaagaagaggacggaaaagagaaaagaaagggctttttttcttctgttctgtTAAATGAGAACAGGAAAAGGGTTTGCCCAAGCAATCGAGTTACGACGGTTCTTCTGACCGCAGCACTGACTCAACACATGAAGCCTGACCTTTTGAGCTTCTGCCCCGCCCACTGTGAAACCCGGATGGGCCTTTAGCTCTACAGGAGAGCTGAGTGCAGGTTGTGAAGTTTGGATTTTGATTAATTTTATGCTTCTATGTTCCAGTAAGGATTTAATGTGAAACTTTAGTCTTTAACTATAAGTATTCTGTTCAGTGTACTGTGGGTGTTAGCTGTGCACATACACTGTATGTAGTTGAAGGTCAAACAGGACTGCCTGAATCTATCCAGTTTGGTTCAGATGGAAAACTTTCTTATTCAGTCCTCTAAATGAGGTTGAGAAAACAATTGTGTTAGTGTAACgtacaaacacaaaaataaaagtcaaagttaTTTGTTTTGCTAATGTTTTACATTGATTAACTTtgattaacaaattaaaagcaaaatattcagaaaataaataaaatgttaattctaATTTGGTGTCCAAAGAGGTAGGTCTAAAGGACCTACACTGAAATACCTGTAGCATTACagtttgagcaaaaaaatctaaacctaaatttCCAAGTCAGGATCAATGacactaaaacattttaatatttcccCAATATTATgtgaaacatataaaaaaatgtctttcagTTTACTTAAACATGTTTTGGACCTCACTATAAACCACATACACAACACAAaggatttacttaaaaaagtcaATTTAGTTAATAGTCCATAAACCTTAATGTAATACATTGTGCTACTGTCTAAAGTACAGTGAACAAGAATTGGCCTTGTAAGAGTCACTGCCCATATTTATGGGTTTCATTCATaggtaatatatatttaactgaaacccATTTAAAACTGATTCAACTCTATACAAGATTAATAAACAGATAAAGAACCTCTAATAAGGAAGTAAAAGCATATCTGCATAACTGATACATAGTAAACACTAACCCAGCTGTGATCTAGAACTGTAAGGAGGACTGTAAAAGGAACCTGTAGCAGACTTGTTGTGGCATTACCTGCACTACATCACACAATTCAGATTCACAACATTCACAACCTAATTGTGCCTAATTGAAGGGACACTAAAGCCAGGCTTCTAAAGATATTTCTAGAAGGTAGGGGGAACTTCTGAGAAACAGCATTGGCCTTTTTTGCAAATCCACATCCAAAATTTTGCCAATGTCCAAAAAATTCACTACAGAGTAGTTATTTATGCTCCTCccaccctcaatgtacatcATAAGAATGCGGTTTCCTTCATTTCTGGGTTTCTACTGACTCGACTACACTTCTTTTTTGGACAAATGTCTTGGCTTATCTcgtttattttacaaaatatcaTTCACACACTTCAACAAGCCTTGTTTTATCAGTATGGTGAACTCTAAAAGTgcttaaaacctaaaaaaaaaaaaaaaaa
>XM_007239756.3
AAAGGGGGGCTCTCCAGGCGCGTTTGTACACTTGTCAGTGACAAcaccaaaaaaagagaaacaccCCCTCTCCAAAACcggacaaaaagaaaaaaaaacgtgaccAGGCTCCCTCCAGCTTCCCAAGTGTCAGAACCAGCGAGAACCAGCATCCCACCAGATCTTCCTCCACTAGGATGCACTGAAGGATCCTTGTCCAACTACTTTTGGACTCCTGTGGACTCGTCCTTTTGTTTGACCTCCATCCTGGTTGGTTATGGGAACTCACACTTGAAGGGGAAGAAGAGCGGTTTAGGCCGGCTTTCTGAGGACTCGCAGGACCCTACTCCATCTCCACCTTCTCCACCATCTGCTTCCACCCAAAGCCCACCCGGAGGTCCGCTTTGGTACCGGGTAGAACCGTAGCACAGCGCCATGGCGAGCTACAACTTTCTGCTGTGTCTCACAGTTCTGGTGGGGCTGGAACTCTCCGGCAGCGACCAGCCGGACTTCTCCATCCCCCCTGCCCGGGACGGGATGGGGTCCCGGGACTTGGATCTAGACCCACACCTCCACCCGCACCACCACCCGGACCCGGACCCGGACTCCCGGCTCTCCCTGATCGAGGTAGAGGACTCCGGAGCCCGCGACTGCTCCGCGTGCGTGTGGCGCGAGCAGAGCAAAGTGCTGCGTCTGGAGACCATCAAGTCCCAGATCCTCAGCAAGCTGCGGCTCAAGCAGGCGCCTAACATCAGCCGCGAGGTGGTCAACCAGCTGCTGCCCAAGGCGCCCCCCCTGCAGCAGCTCCTGGACCAGCACGACTTCCAGGGGGACGCGTCCCCGCAGGACGAGTTCGTGGAGGCGGACGAGTACCACGCCACCACCGAGTCGGTCATCACCATGGCCTCCGAGCCGGAACCCATCGTGCAGGTGGATGGGAAGCCCAGCTGCTGTTTCTTTAAGTTCAGTCCTAAGCTGATGTTCACCAAGGTTCTGAAAGCCCAGCTGTGGGTGTACCTTCGGCCCCTGCAGCAGACCTCCACCGTCTACCTGCAGATCCTCCGACTCAAACCCGTCACCGACCAGGGCAGCCGGCACATCCGGATCCGCTCGCTGAAGATCGAGCTGAACTCCAGGTCCGGCTACTGGCAGAGCATCGACTTCAAGCACGTCCTGCAGAACTGGTTCAAACAGCCGCACACCAACTGGGGCATCGACATTAACGCCTTCGACGAAAGCGGCAACGACCTGGCCGTGACCTCTCTGCGACCGGGAGAGGAAGGGCTGCCGTTCTTAGAGGTGAAAGTTCTCGAGACCACCAAGCGCTCGCGGCGGAACCTGGGCCTGGACTGCGACGAGCACTCCACCGAGTCCCGCTGCTGCCGCTACCCACTCACAGTGGACTTTGAGGCTTTCGGGTGGGACTGGATCATCGCACCCAAGCGCTACAAAGCCAACTACTGCTCGGGCCAGTGTGAGTACATGTTCATGCAGAAGTACCCGCACACTCACCTGGTCCAGCACGCCAATCCCAGAGGCTCGGCGGGTCCATGCTGCACCCCCACCAAGATGTCTCCCATAAACATGCTCTACTTCAATGACAAGCAGCAGATCATCCACGGCAAGATTCCCGGCATGGTGGTGGACCGCTGCGGATGCTCTTAAACAAAAAGGCAGAACTCATTCAGGCTCAGCATTGTCCCACCTGCGTCATGGAGTATCTCCTGTTTTATTTCCTCGTCCCTCGTATCCTGGAAGAGCTACACGACACCTGAAGGAGGCCATCACATTAGTTCATCACTGTAGATCAACAGATAACAGATCATTCATTGTAAAGCTGTATAAACTGAGGCCTAGCGGCACAGATCCGTATGAATGCTTTCAGAGGGTGAGTGAGGACCAGCTGGTGAGAGAAAAGCGAGACGAAACAAATGGAGAAgagacaaaaatgtatatctttaatgttttagatttttaagctgtttgtttgtttgtttgatagtTATATAATAGATTATAAGATTTTTAAGCCTTATACTTCTTTATCCTTCTCTAGAAAGGGAAAACACAATACTGAGAAGCAAACATTTTATAGCACCATAAATACTGGGACAGTAAAGTCAGAATTGTCTTTTTAACATCTTTTGGGGGTGTTCCTTGTATGCAGTGGTCAGAACTTATCAAAAATGCTACAAGAAAGGTCAACCACTTGTAAGGTAAACCAGCAAACATGGATGCCCAAAGCTTATTGATGCTTATGGGGAGGACCTCATGCAGGAACCTCTTTATGGATCATACATTATAGGACACCTTCAGTGGTACTGAAAAGTCTGTTTGGGTGGTACAAGCAAGATCTACACAGTATTGGATATACATAGtattaggcaggtggttttaatgttatggcaaaTTGGCCTTGAATCAATTCAGTTCTGGCCCTATATAAGTTTTGTGAAATCCTGGAGTCCATGCTTCGATGGGACAGAGCTCTTTTGGTGGCACAAGGGTAATTACCATAGTAATTCATAGTAAGGCATGTAGTTTCAATATTATGGCTGATTTACATTGAGCTAATTTAGTCCTAAAACTtgactaaaaaagaaaaagtaggatccagtacttttttactACTAAGAGATATTGCCTAAAGAGTCACTTCACTGTCCCAATAATTATGGAAAGCTTTTCCTCtctaaacatgaaaaaaacatcCCTATCAATATATTTCAGATTACAAAATATTCCAATTttccacacataccccacaacCACAAACAAAATGATGCCAAAACACAAGGACAAGATAGTGCCGAAAGCATTCTAGGGTagaccaccaccatcatcaccaccccCCCACCCTCCTCTCTGCAAACGCATCTAGCACCCCAGTGCGAGATTCCCGAGAGTCCAGGCACCCTTTCATGGCCGCTTTGATCTTCCTTTTACTCGTGATCTTgtaaaaaagactaaaagaaaaaagaagaggacggaaaagagaaaagaaagggctttttttcttctgttctgtTAAATGAGAACAGGAAAAGGGTTTGCCCAAGCAATCGAGTTACGACGGTTCTTCTGACCGCAGCACTGACTCAACACATGAAGCCTGACCTTTTGAGCTTCTGCCCCGCCCACTGTGAAACCCGGATGGGCCTTTAGCTCTACAGGAGAGCTGAGTGCAGGTTGTGAAGTTTGGATTTTGATTAATTTTATGCTTCTATGTTCCAGTAAGGATTTAATGTGAAACTTTAGTCTTTAACTATAAGTATTCTGTTCAGTGTACTGTGGGTGTTAGCTGTGCACATACACTGTATGTAGTTGAAGGTCAAACAGGACTGCCTGAATCTATCCAGTTTGGTTCAGATGGAAAACTTTCTTATTCAGTCCTCTAAATGAGGTTGAGAAAACAATTGTGTTAGTGTAACgtacaaacacaaaaataaaagtcaaagttaTTTGTTTTGCTAATGTTTTACATTGATTAACTTtgattaacaaattaaaagcaaaatattcagaaaataaataaaatgttaattctaATTTGGTGTCCAAAGAGGTAGGTCTAAAGGACCTACACTGAAATACCTGTAGCATTACagtttgagcaaaaaaatctaaacctaaatttCCAAGTCAGGATCAATGacactaaaacattttaatatttcccCAATATTATgtgaaacatataaaaaaatgtctttcagTTTACTTAAACATGTTTTGGACCTCACTATAAACCACATACACAACACAAaggatttacttaaaaaagtcaATTTAGTTAATAGTCCATAAACCTTAATGTAATACATTGTGCTACTGTCTAAAGTACAGTGAACAAGAATTGGCCTTGTAAGAGTCACTGCCCATATTTATGGGTTTCATTCATaggtaatatatatttaactgaaacccATTTAAAACTGATTCAACTCTATACAAGATTAATAAACAGATAAAGAACCTCTAATAAGGAAGTAAAAGCATATCTGCATAACTGATACATAGTAAACACTAACCCAGCTGTGATCTAGAACTGTAAGGAGGACTGTAAAAGGAACCTGTAGCAGACTTGTTGTGGCATTACCTGCACTACATCACACAATTCAGATTCACAACATTCACAACCTAATTGTGCCTAATTGAAGGGACACTAAAGCCAGGCTTCTAAAGATATTTCTAGAAGGTAGGGGGAACTTCTGAGAAACAGCATTGGCCTTTTTTGCAAATCCACATCCAAAATTTTGCCAATGTCCAAAAAATTCACTACAGAGTAGTTATTTATGCTCCTCccaccctcaatgtacatcATAAGAATGCGGTTTCCTTCATTTCTGGGTTTCTACTGACTCGACTACACTTCTTTTTTGGACAAATGTCTTGGCTTATCTcgtttattttacaaaatatcaTTCACACACTTCAACAAGCCTTGTTTTATCAGTATGGTGAACTCTAAAAGTgcttaaaacctaaaaaaaaaaaaaaaaa

Function

symbol description
gdf11 Predicted to enable cytokine activity. Acts upstream of or within anterior/posterior pattern specification. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including brain; gonad; head; intermediate cell mass of mesoderm; and tail bud. Orthologous to human GDF11 (growth differentiation factor 11).

NR:

description
PREDICTED: growth/differentiation factor 11-like isoform X1

GO:

id name namespace
GO:0040007 growth biological_process
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K22679 GDF11; growth differentiation factor 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007239755.3 True 4486 mRNA 0.45 3 13493576 13533622
XM_007239756.3 False 4482 mRNA 0.45 3 13493576 13533621

Neighbor

gene id symbol gene type direction distance location
LOC111195441 LOC106570611,LOC106595375,LOC106565963 coding downstream 28171 13459735 ~ 13465405 (-)
LOC103033524 mmp19,LOC103033524,LOC108431507,LOC107737372,LOC107683650 coding downstream 97681 13384925 ~ 13395895 (-)
LOC103031721 syn2,syn2b,LOC107758022 coding downstream 211103 13148196 ~ 13282473 (-)
pparg pparg coding downstream 361480 13085029 ~ 13132096 (-)
mkrn2 mkrn2 coding downstream 446030 13033576 ~ 13047546 (-)
LOC103026383 NA coding upstream 23400 13557022 ~ 13572611 (-)
LOC111195442 NA coding upstream 717842 14251464 ~ 14255472 (-)
vgll4 vgll4,LOC107697562,LOC107750033 coding upstream 1015524 14549146 ~ 14609624 (-)
tamm41 tamm41 coding upstream 1077329 14610951 ~ 14621412 (-)
prph prph coding upstream 1091200 14624822 ~ 14638350 (-)
G189509 sarnp non-coding downstream 8018 13472625 ~ 13485558 (-)
G189494 cdk2,LOC107570445,LOC107683630,LOC107562245 non-coding downstream 37149 13452154 ~ 13456427 (-)
G189490 NA non-coding downstream 45051 13448241 ~ 13448525 (-)
G189455 timeless non-coding downstream 158666 13333460 ~ 13334910 (-)
G189448 NA non-coding downstream 177631 13315709 ~ 13315945 (-)
G189522 NA non-coding upstream 12908 13546530 ~ 13546899 (-)
G189600 NA non-coding upstream 407564 13941186 ~ 13943399 (-)
G189623 NA non-coding upstream 440033 13973655 ~ 14047697 (-)
G189624 NA non-coding upstream 446294 13979916 ~ 14008260 (-)
G189638 NA non-coding upstream 511123 14044745 ~ 14108618 (-)
tsen2 NA other downstream 416834 13062799 ~ 13076742 (-)
LOC111195455 NA other downstream 779544 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other downstream 874010 12614912 ~ 12619566 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 1098044 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 1314966 12160542 ~ 12178610 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 1785021 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 1875585 15409207 ~ 15466584 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 2812079 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 3036001 16569623 ~ 16599317 (-)
cass4 NA other upstream 3300228 16833850 ~ 16869461 (-)

Expression


Co-expression Network