dhrs3 (dhrs3,LOC108439496,LOC107555693,LOC107685629,LOC107749419,LOC107703071,LOC103042050,LOC106582983)


Basic Information

Item Value
gene id dhrs3
gene name dhrs3,LOC108439496,LOC107555693,LOC107685629,LOC107749419,LOC107703071,LOC103042050,LOC106582983
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 10023992 ~ 10041141 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007243192.3
GCAGTCGAAAACAACTCCTCACTAAACACAGAGTGGAGAGAAACTGTCAGTCAGGATTTATGGGCACTTTAAAGCTCCACTCAGAAGCGGAGTCCGGGTCCGTCAGCCCCGCGTTTCCCCGCGCTCAGCTGGCATGACAGGCTCCAGATTCTCGCTCTTTCGCCGTGCGGATCTTTAACTTCACCCAGAGACTCTCAGACACGGGTTTTAAGAGTccagctttttttaaaaaaataaagaagaagcGCCATAAACATGCCTGAAGATCCTCTACCGGTTACTAACGGCGGGGGAGCGAAAACATCAGCGCGTGGGACCCGATGAGAGagagcgctgctgctgctggagctccgGGTTAATTTATTCAGAAAACAGAGAAACGCGGTGAATCCGGGTGAACTGAGCCGGATATTAGAGTTCTGTCCGCGGCTAAAATGGATTTGAGGACGCTGGGCTGCGTCCTGCTCTTACCCCTCCAGCTCCTTTACCACACACTGCGGGCGGGCGTGCGGCTCCTGCTGCCCGGCAGGAGGAGAGACCTGAGCGGCGACGTGGTGCTGATCACCGGGGGGGGACGGGGCATCGGTCGCCACCTAGCTAAAGAGTTTTCCCAGTCTGGAGCtaagaagCTGATCCTCTGGGGACGCACTGAGAAGTGTCTGAAAGAGGCGTGTGAGGAGATAAACCACATGGGGACTGAGTGCCACTACTTTGTTTGCGATGTGGCCAACAGAGAGGAAGTGTACAAGCAAGCCAAGGTGGTACGAGAAAAGGTTGGCGATGTCACCATCTTGGTCAATAATGCAGCAGTGGTTCATGGGAAGAGTTTGATGGACAGTGAAGATGATGCCCTCCTGAAATCTCAGCATGTAAATACAATGGGACAGTTTTGGACTACAAAAGCATTCTTACCTCGTATGCTGGAACTACAGAAGGGTCACATGGTCTGCGTGAACTCCATCCTGTCTCTGTCACCAATACCTGGTGCTATAGACTACTGCACCTCAAAAGCTTCAtctctggcctttatggaaagCCTGACCCTTGGCCTGCTGGACTGCCCTGGTGTTGGCTGCACCACCGTGCTCCCATTTCACACCAACACTGAGATGTTCCAGGGCATGAGAGTGAGGTTTCCCAAACTCTTCCCACCCCTCAGGCCAGAAGTGGTTGCACAGAGAACGGTGGATGCAGTTCGGACCAACACAGCCTTCGTCTACCTTCCATGGAGCATGCATGCACTGGTTTTCCTCAAAAGCATCTTACCGCAGAGTGCTTTAGCAGAAATCCACAGGTTCTCGGGAACCTACACATGTATGAACACGTTTAAGGGACGAACATAAGAGCCGAGCCGGGGTGGAGGAGTTTCTCTGTGATAATGAAGACGGGGGATTTCACGTCGGTGTTTCGCTCCTGACTGGTGAGAACAGACAGTTCCTGAATCAGACGAGTCGACTGTCCTTCTGTAAAGACACTGAACGGAGCATAAAAAAGGATTTGGAAAATGGTGAAGAACATGAAGTGCAGAAAATGTTGCTTTAGTTCGGACTGCAGCAGGACAGGCTTTGGGACAGCTTTgacctgtgtgtgagtgtgtgtgtgcatggacTGGTCTTAAGAAAGCTGTCTCACGCCGCTGTATCTTCCTCTGCCCGTTTTATTAGAAAGCTAATGTCACTGTAAATTGATCATTTGATAAAAATGCAGTTTCaagaacattttttatattctgaTAGATTTGGGTGTGTAAAACTAAAAGGGTGTGGGTGTCCCTGATTCATTTTGTGCTGCggtgttgccagattgggtggttgTCTCTCAACAAAAGTGACAGATCTGCAGTTGGTTCCAAACATGAGCTCGAAGTCTATGTGggttttttatacatttttatcatttttttgactttataagaaaatgaaataaattaatgaaataaatatgggaaactatatatatttgtatcttTTTCAAATGTATTAATTGAACTAAAATGGGCTGCGTGGAGGTTGAAGCCAGACAATGTAAAGCAACTGTGAAGCAACATCAATGGACAGCTAAACATGCTAAACATGCTAAACATGCTTGAAGGAAAATGCTAATAGACAAATCTAATACCTGAACTAACAGATGCTGATAAACAGTGCTGCATTCCACACATCATCTGCagctttctgtatttctgcataaattgcataaaatgtgattttctaAAAATCTTTAAACATTACAATGATATTCTACCTGTTTTATGCCATTTCCACTAacaagctaaagaacactgtagTAATATGTGTACagggtctcctgcattaaatatggatgtgcttgtc
>XM_015604311.2
aacagatcctattttcttcTCTTAGTTAACTCAAAATCTACAGCATTTAGAATTTAGGTATTAAATAATTGGATGCAATCTGATTGTCTCCTGAATACTAGTAGGTCAAAATACCTGATGATCTTGCTAATCCTGAATATATTTTTGCTCTAGTAGCTTTCCTGCATTTATACTGATCCTCTGGGGACGCACTGAGAAGTGTCTGAAAGAGGCGTGTGAGGAGATAAACCACATGGGGACTGAGTGCCACTACTTTGTTTGCGATGTGGCCAACAGAGAGGAAGTGTACAAGCAAGCCAAGGTGGTACGAGAAAAGGTTGGCGATGTCACCATCTTGGTCAATAATGCAGCAGTGGTTCATGGGAAGAGTTTGATGGACAGTGAAGATGATGCCCTCCTGAAATCTCAGCATGTAAATACAATGGGACAGTTTTGGACTACAAAAGCATTCTTACCTCGTATGCTGGAACTACAGAAGGGTCACATGGTCTGCGTGAACTCCATCCTGTCTCTGTCACCAATACCTGGTGCTATAGACTACTGCACCTCAAAAGCTTCAtctctggcctttatggaaagCCTGACCCTTGGCCTGCTGGACTGCCCTGGTGTTGGCTGCACCACCGTGCTCCCATTTCACACCAACACTGAGATGTTCCAGGGCATGAGAGTGAGGTTTCCCAAACTCTTCCCACCCCTCAGGCCAGAAGTGGTTGCACAGAGAACGGTGGATGCAGTTCGGACCAACACAGCCTTCGTCTACCTTCCATGGAGCATGCATGCACTGGTTTTCCTCAAAAGCATCTTACCGCAGAGTGCTTTAGCAGAAATCCACAGGTTCTCGGGAACCTACACATGTATGAACACGTTTAAGGGACGAACATAAGAGCCGAGCCGGGGTGGAGGAGTTTCTCTGTGATAATGAAGACGGGGGATTTCACGTCGGTGTTTCGCTCCTGACTGGTGAGAACAGACAGTTCCTGAATCAGACGAGTCGACTGTCCTTCTGTAAAGACACTGAACGGAGCATAAAAAAGGATTTGGAAAATGGTGAAGAACATGAAGTGCAGAAAATGTTGCTTTAGTTCGGACTGCAGCAGGACAGGCTTTGGGACAGCTTTgacctgtgtgtgagtgtgtgtgtgcatggacTGGTCTTAAGAAAGCTGTCTCACGCCGCTGTATCTTCCTCTGCCCGTTTTATTAGAAAGCTAATGTCACTGTAAATTGATCATTTGATAAAAATGCAGTTTCaagaacattttttatattctgaTAGATTTGGGTGTGTAAAACTAAAAGGGTGTGGGTGTCCCTGATTCATTTTGTGCTGCggtgttgccagattgggtggttgTCTCTCAACAAAAGTGACAGATCTGCAGTTGGTTCCAAACATGAGCTCGAAGTCTATGTGggttttttatacatttttatcatttttttgactttataagaaaatgaaataaattaatgaaataaatatgggaaactatatatatttgtatcttTTTCAAATGTATTAATTGAACTAAAATGGGCTGCGTGGAGGTTGAAGCCAGACAATGTAAAGCAACTGTGAAGCAACATCAATGGACAGCTAAACATGCTAAACATGCTAAACATGCTTGAAGGAAAATGCTAATAGACAAATCTAATACCTGAACTAACAGATGCTGATAAACAGTGCTGCATTCCACACATCATCTGCagctttctgtatttctgcataaattgcataaaatgtgattttctaAAAATCTTTAAACATTACAATGATATTCTACCTGTTTTATGCCATTTCCACTAacaagctaaagaacactgtagTAATATGTGTACagggtctcctgcattaaatatggatgtgcttgtc

Function

symbol description
dhrs3 Predicted to enable NAD-retinol dehydrogenase activity. Predicted to be involved in regulation of retinoic acid receptor signaling pathway and retinoid metabolic process. Predicted to act upstream of or within several processes, including animal organ morphogenesis; negative regulation of retinoic acid receptor signaling pathway; and regulation of ossification. Predicted to be located in endoplasmic reticulum membrane and photoreceptor outer segment membrane. Predicted to be active in lipid droplet.

NR:

description
PREDICTED: short-chain dehydrogenase/reductase 3-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007243192.3 True 2333 mRNA 0.47 6 10023992 10041141
XM_015604311.2 False 1876 mRNA 0.42 6 10034011 10041141

Neighbor

gene id symbol gene type direction distance location
klhdc7a LOC108438577 coding upstream 184670 9836099 ~ 9839322 (+)
LOC103024232 arhgef10la,LOC108438575,LOC107695083,LOC106565901 coding upstream 1290867 8438713 ~ 8733125 (+)
LOC103046266 chd5,LOC107555845,LOC107691315 coding upstream 1592930 8346072 ~ 8431062 (+)
LOC103047485 rpl22,LOC103047485,LOC108414460,LOC107737211,LOC107555851 coding upstream 1680645 8332182 ~ 8343347 (+)
LOC103024538 draxin,LOC108413332,LOC106565906 coding upstream 1778995 8193011 ~ 8244997 (+)
LOC103039471 NA coding downstream 78892 10120033 ~ 10132709 (+)
LOC111195373 NA coding downstream 135989 10177130 ~ 10180602 (+)
LOC111195374 NA coding downstream 173218 10214359 ~ 10214948 (+)
LOC111195375 NA coding downstream 179401 10220542 ~ 10221130 (+)
LOC103026179 asic1,asic1b,LOC107721241 coding downstream 434798 10475939 ~ 10963809 (+)
G188349 NA non-coding upstream 42423 9918929 ~ 9981569 (+)
G188358 NA non-coding upstream 52699 9964529 ~ 9971293 (+)
G188356 NA non-coding upstream 67403 9953600 ~ 9956589 (+)
G188355 NA non-coding upstream 68171 9952648 ~ 9955821 (+)
G188316 NA non-coding upstream 193816 9829959 ~ 9830176 (+)
G188366 NA non-coding downstream 24597 10065738 ~ 10066423 (+)
G188478 NA non-coding downstream 50068 10091209 ~ 10157456 (+)
G188527 NA non-coding downstream 187356 10228497 ~ 10229131 (+)
G188622 NA non-coding downstream 260027 10301168 ~ 10301380 (+)
G188623 NA non-coding downstream 261304 10302445 ~ 10302703 (+)
G188325 NA other upstream 166997 9854307 ~ 9856995 (+)
LOC103032765 igsf21,igsf21a,LOC108438574,LOC107749415,LOC107727841,LOC107685626 other upstream 204037 9283795 ~ 9819955 (+)
agtrap agtrap other upstream 1752280 8256796 ~ 8271712 (+)
LOC111195452 NA other upstream 1910750 8112003 ~ 8113242 (+)
trnaq-uug_4 NA other upstream 2831766 7192154 ~ 7192226 (+)
LOC111195371 NA other downstream 60614 10101755 ~ 10106530 (+)
G188624 NA other downstream 262219 10303360 ~ 10303665 (+)
G188771 NA other downstream 806930 10848071 ~ 10852736 (+)
G188923 lrig1,LOC107557776,LOC107753782,LOC107600281 other downstream 1048587 11089728 ~ 11090047 (+)
G188968 suclg2,LOC107753779,LOC107656059,LOC107729402,LOC107699794 other downstream 1410238 11451379 ~ 11464480 (+)

Expression


Co-expression Network