LOC103047460


Basic Information

Item Value
gene id LOC103047460
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15832088 ~ 15833721 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007243528.2
CTAATTACTAGTGAATAATAAGTAATTCACCGTTGTAATTAACACTGTTCTTCTGCTCTGCTCTACTGTTTGTTTCAGGTGTACAGGTGTAAAGTAGACTGGGGAAATTCTCGAGGAAATGGAAACAGAACAGACGCTTCCTTTCGCTGGGTGCTTTAAGGCGTACGCCTGTTCGAGGGTGATGCTTCTTCTCCTGCTGCTCGTTCATCCAGCAGCAGCGTCTTCCAGCCTCTGCCAGGACCTCTGCATCTGCTCCAGCGACATCCTCAGCTGCCCCCAGAGGAACCTGACTACTCCGCCCACGCACCTGCCTCGCTACACCGCCGTACTGGACCTCAGCTTCAACAGTATCTTGCGATTGCGTGCCGACTGGACCGCTGTATCGCTCCGCAGTCTGCACACTCTCCTGTTGAGCCACAACAACCTACACTCGCTGTCCCCGGATGCGTTCACGAAGGTGAAGCGCCTGAAGCACCTCGACCTGTCCTCGAACAACTTAACGTACCTGGACGAGTTCGTCTTCGAGCCGTTGCCGCACCTGGAGGTTCTGATGCTCTACAACAACCGGATCGGTCTGATCGATCGCTTATCGTTCTCTGGGCTGTTAAGTCTGCAGAAGCTTTACCTGAGCCAGAACCGGGTCACTCGCTTCCCTCTGGAGCTGCTCAAGGACCGGAACCGTCTGGACAAGCTTCGTCTGGTGGACGTCTCCTTTAATCGAATCAGATCTCTACCTCTAGCGGAGCTGAAGACCGTTCCCACCTGGCTTAAGGACAGCGTCTACTTTCACGGCAATCCGTTGCTCTGCAGTTGCGACTTGTACAGCGCCCTCAGCGGGTGGCAGCAGCGAGATCTGCGCCCGGTTTCCGAATTCACAGATAATCATACATGTGTGCAACCATGGTCACCTATCGGTGGAGGCAAAACCAGCATCCTGCAGCTCCACCTGCAGCTAAACTGCAGTGAAGTCCGAGTTCGAGACGAAGAGGCTTTTCTAAACCAGATTCTCATCTTAGACTGTGATTCACGCTTTAGGGACGCAACTAAGAATTGGATAGCGCCCCCGCTGGTCAACCAGAGCATTCTTCTGCCATTGCCTGATGGGCAGCTGCAGTTGGGGCCACTGCGGGCGGAGGATTCGGGCGAGTACAGGTGCGTGGTGGAGGGTGAGGGTGTAAACGAGACGGTGTTGGTAACGGTGAGGGTCTACAACTCTACCTACGGCTTCGGGGATGGTCTGAACACAGCCTACACCACGCTGGGCTGCTGCATACTCACCATCGTTCTTGTGTTCATCTACCTGTACCTCGTCCCCTGCCCATGCTGCCCCGGCAAGGCAAAAATGGCGTACGAAGAAAGCTGCTACGCCTCCAACCTGAGCCTTACAAACCCTCCTGACCCACAGGGGGCGCCACATGTGGCCTTCTATGAAGGTAAAGACCAGAACGGTGGCATAAAGTGTGATGCGAAGAAAAACGATGAGGATGGGGATAGATGAATACAAcgataaatacaaacaaaaggAAATACTTTGAtagaaatgctgtaaatgtaacatATAAAGTTGTACATGGTGTAAAAGACAGACATAAAAAGTGGAGATgcaaactttttgttttgttccaaCACTGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007243528.2 True 1634 mRNA 0.52 1 15832088 15833721

Neighbor

gene id symbol gene type direction distance location
LOC103030908 LOC103362890,LOC104939527,LOC101063010 coding downstream 6849 15814220 ~ 15825239 (-)
acad9 acad9,LOC107749438,LOC107566791,LOC107551129 coding downstream 47434 15765883 ~ 15784654 (-)
efcc1 efcc1,LOC107581369 coding downstream 70486 15723299 ~ 15761602 (-)
ppcs ppcs,LOC107685733,LOC107565714,LOC107551114,LOC107749447,LOC107691385 coding downstream 307915 15519665 ~ 15524173 (-)
rbm12 rbm12,LOC108424674,LOC107685660,LOC107749443,LOC107551121,LOC107581359 coding downstream 327697 15495710 ~ 15504391 (-)
LOC103030277 LOC108415871 coding upstream 13140 15846861 ~ 15851191 (-)
LOC103029523 iqsec1b,iqsec1,LOC108424663,LOC107691341,LOC107551128 coding upstream 35414 15869135 ~ 16138293 (-)
wnt7a wnt7a,wnt7aa,LOC108424657,LOC107749431,LOC107685644,LOC107727836 coding upstream 686823 16520544 ~ 16556758 (-)
phf2 phf2 coding upstream 905566 16739287 ~ 16794230 (-)
fam120a fam120a,LOC107685640,LOC107691381 coding upstream 963147 16796868 ~ 16827437 (-)
G190214 NA non-coding downstream 33331 15718099 ~ 15798757 (-)
G190204 NA non-coding downstream 224183 15597327 ~ 15607905 (-)
G190199 NA non-coding downstream 262817 15556521 ~ 15569271 (-)
G190183 NA non-coding downstream 380518 15388095 ~ 15451570 (-)
G190171 NA non-coding downstream 477456 15353437 ~ 15354632 (-)
G190252 NA non-coding upstream 75314 15909035 ~ 15909528 (-)
G190257 NA non-coding upstream 132774 15966495 ~ 15969045 (-)
G190265 NA non-coding upstream 161475 15995196 ~ 16002227 (-)
G190268 NA non-coding upstream 168543 16002264 ~ 16043340 (-)
G190234 NA non-coding upstream 180546 16014267 ~ 16016150 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other downstream 365504 15409207 ~ 15466584 (-)
LOC103024926 dynlrb1,LOC106565026 other downstream 509913 15318643 ~ 15322175 (-)
tsen2 NA other downstream 2755346 13062799 ~ 13076742 (-)
LOC111195455 NA other downstream 3118056 12612611 ~ 12714032 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 511980 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 735902 16569623 ~ 16599317 (-)
cass4 NA other upstream 1000129 16833850 ~ 16869461 (-)
irf6 irf6,LOC107599105,LOC106565674 other upstream 1347393 17181114 ~ 17193747 (-)
G190788 NA other upstream 1383600 17217321 ~ 17219780 (-)

Expression


Co-expression Network