b3galt6 (b3galt6,LOC107592565,LOC107680432,LOC107699339,LOC107555998)


Basic Information

Item Value
gene id b3galt6
gene name b3galt6,LOC107592565,LOC107680432,LOC107699339,LOC107555998
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 28024337 ~ 28028670 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247727.2
CAGCTCACTGCCTGCGTCACCACCAGCCTACAGCTCCCTGCAGCTCCTGTCAGAGAGCGGAGGCTTTAGGAGGGAGAATGACGGCGTAAAAAAAcccgtattttattattaaccgTATTTCTGGAGTTATCTGTGAGTTAAATGCTCGCGGGTTGGGTGTGTAATGAGCGCGTTACCCGCGTCTAACGGTATCAGCCCGTTTAGCCTCTCTGAGCtgactagcttagcttagctgtcTGTGTTGCCGGGCAGCAGCTAACCAGCAGCCACAGGCTAACAATGCAGCACAGCCCGTTATAGAGCTTCAGAAACCACTGCAGCGCCTGGAGAACAGCTGTGACATCATGAATTTTGTCCGCCTTGTCTGCCGCCACAAGACGGGCCTGGCCCTCTGCGTCCTCTGCTTCTTCGCTATGGTCCTCCTTTTCCTCGCCAAATGCACCTCAGAGACGCTGAAGCCGGCCGACTCCCCAGGAATGGCGCCACAAGCAGAGCCGCGTCGAGAGCACCCGCCGGCTCCTTCACAGGCCAAACAGCTCTCTGCATTCCTGGTGGTGCTCATCACCACGGGCCCCAAGTACACAGAGCGGCGCAGCATCATCCGCAACACGTGGTTGGCAAAGTTGGACCGGGAAATTCTTGCCCTGTTCGTAATCGGAACTGAGGGCCTATCAGCGGAGGACATCCAGAACCTGAACACGGAACAGGTACGACACCATGACCTCCTGCTACTCCCGGACTTGCGTGATTCCTACGAGAATCTGACACGCAAGCTCATCCACATGTACTCCTGGCTGGACCAGAAGGTGGATTTCAAATTTGTTCTGAAGGCGGATGACGACACCTTTGCTCGCCTGGACCTTCTTAAGGAGGAGTTGAAGGCCAAGGATCCCAGTCGCCTCTACTGGGGCTTCTTCTCTGGTCGTGGTCGGGTTAAAGCTGCCGGTAAATGGAAAGAAAGTGCGTGGGAGTTATGTGACTATTACTTACCGTATGCCTTGGGTGGTGGCTACGTGCTGTCCGCTGACCTGGTACACTACATTCGTCTCAATGCTGCTTTCTTGAAGACGTGGCAAAGCGAGGACGTCTCTCTGGGCGCCTGGCTGGCCCCCGTTGATGTGAAGCGTCTGCACGACCCCCGATTTGACACCGAGTACAAGTCGAGGGGCTGCAGCAATAAATATCTTGTCACGCACAAGCAGAGCTTGGAGGACATGCTGGAGAAACACCAGACCCTCGAAAGAGAGGGGCACCTGTGCAAGGAGGAGGTGAAGCTCCGCCTATCATACATTTATGACTGGAGCGTGCCGCCTTCGCAGTGCTGCCAGCGCAAAGACGGAATCCCTTGATTTCTTCCCGGGACAATTATGTCACTCCTTTCAGCTTTGtgttgctatttatttatttatttattcgtttATTTATCAATGTCGTCCATGCTTGACCCAACCCAAGTTTACATTCCGCGTTGGAGATTTACAaaggttttttcttttttttttctttctgtaatcCAGTTATGATGACTGGGCGTGTTGCGTACTCTGGATGCGCAAAGCTCTTTGTCTTTGCCTGTGTTTTGACTGATTGTACAAGGCTGAGTTATTATGAGAAAAGcctttgagagagagagaagcgatTTGGCTGCTGTTTACCCTCTTCCCTTTGCCTTGTTCCTCACTGAATGTCCAGTCTCTTTTGCACACGGACAGAATCCATATCCATTGCTGATTTCTAGGGCTGGTCTGAATAgcattttagattttttcctGTACTTAGTATCACCCTTACAAACATTACTCACAATACAGAATAAGCCATAATGTGACGTTTCTTCAGTATTGCAGTTAAAAGTGTACACTGTAGGCCATACATACCAGTGATGGTGGGAATGAACTGAAATCTGCCATGCTGTAAGGCATGTAGCTGATAAAGCAGATATTTAATTAAAGTATTATATCTTATTAGATAATTCAAGCCCTCATGCTGGTTGGTTTTTaggcatattttatattttcgaTACAGTTGCCACGTGGTAATGGTAAGGCTGGAcaatatggttaaaaaaaaaaaaagtataattgcagtacatttcttaatttttgttGATAATATATCAACGTAAATAGAATATATGTCACAGAAAAAAAGCTTCCAGGAGTGCCTAAATTGGATGTCtgtgtttctttaaaatttatATGCCTATTTATGTAAAGCACCCTATAATGAATGTCAGTCAGTGaaagatgctgtaaataatagGTTAGAAAGTATTACCTTCATTGAAACATTTTGTATGGCggtatatatatagatattgaattattgtccagTCGTACTCTATGATGAGGTGCCGTGGATGCTTAGCATACATTTGATTATGATGATATtaactgtacttttttttgtttaatgaacTCTAATTTTTGTGCCTTAACAAAAGGCTAAGCTTCCAACTTCTACAAACACCAgtgttacaaatttacacaAGAGTATTCAGATAACTTGGGCCAGCCCTACTGATtgtggattaaaaaaatgagcTCCACAGAGATACTGAGAAAATGAATTGACGAAAGCCGCTTTTATTGGATGAAGgtgactttgttttttttttttaatgctgaaaGTATTAGCCCTGTAAATGCTTTATGCCAGTGTGCCCTATTAATAACACCCTCAAATGTTACTACTGAACAGTAGATTATACCTCttgttcttttattattaaatgttctgtttttacaTGA

Function

symbol description
b3galt6 Predicted to enable UDP-galactosyltransferase activity. Predicted to be involved in glycosaminoglycan biosynthetic process. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome spondylodysplastic type 2 and spondyloepimetaphyseal dysplasia with joint laxity type 1. Orthologous to human B3GALT6 (beta-1,3-galactosyltransferase 6).

NR:

description
PREDICTED: beta-1,3-galactosyltransferase 6

GO: NA

KEGG:

id description
K00734 B3GALT6; galactosylxylosylprotein 3-beta-galactosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247727.2 True 2750 mRNA 0.45 2 28024337 28028670

Neighbor

gene id symbol gene type direction distance location
LOC103028137 LOC103028137,LOC108436315,LOC104939458,LOC108254806,LOC103386138 coding downstream 15728 27962367 ~ 28008609 (-)
LOC103045240 LOC108436365,LOC107592563,LOC107699336,LOC107680449,LOC107751004,LOC108254807 coding downstream 69285 27911675 ~ 27955052 (-)
kif21b kif21b coding downstream 149359 27757227 ~ 27874978 (-)
bcl2l15 NA coding downstream 570961 27445479 ~ 27453376 (-)
LOC103029919 NA coding downstream 720397 27301296 ~ 27303940 (-)
LOC103026702 hipk1,si:ch211-160o17.4,LOC108254861,LOC107680439 coding upstream 2016 28030686 ~ 28048695 (-)
LOC103044609 acap3b,LOC108254862,LOC107680440,LOC107714502 coding upstream 37212 28065882 ~ 28162362 (-)
LOC111195421 ddx19,LOC108411521,LOC108255077,LOC107680447,LOC107699345,LOC107572851,LOC107556002,LOC105931731 coding upstream 162050 28190720 ~ 28201222 (-)
LOC103026411 LOC107680412,LOC107751023,LOC107555990,LOC107714481,LOC107699319 coding upstream 188791 28217461 ~ 28224664 (-)
LOC103044024 LOC108436218 coding upstream 225114 28253784 ~ 28267940 (-)
G193370 NA non-coding downstream 288226 27735902 ~ 27736111 (-)
G193369 NA non-coding downstream 292675 27731003 ~ 27731662 (-)
G193367 NA non-coding downstream 300232 27723860 ~ 27724105 (-)
G193223 NA non-coding downstream 517808 27488865 ~ 27506529 (-)
G193386 NA non-coding upstream 38804 28067474 ~ 28067681 (-)
G193411 NA non-coding upstream 137171 28165841 ~ 28166081 (-)
G193424 NA non-coding upstream 206495 28235165 ~ 28236469 (-)
G193426 NA non-coding upstream 215138 28243808 ~ 28244702 (-)
G193435 qrich1,LOC107729405,LOC107558890 non-coding upstream 288674 28317344 ~ 28318704 (-)
tmem167b tmem167b other downstream 8725 28010991 ~ 28015612 (-)
LOC103046149 LOC102777140,LOC108436414,LOC102208887,LOC105027122,LOC108280970,LOC103144351,LOC107751002 other downstream 323006 27425042 ~ 27701331 (-)
LOC111195340 NA other downstream 632766 27390794 ~ 27391571 (-)
G193097 NA other downstream 991248 27031663 ~ 27033089 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other downstream 1300231 26711253 ~ 26724106 (-)
LOC111195422 si:dkey-33m11.6,LOC108411515,LOC108255079,LOC107572850,LOC107714486,LOC107680422 other upstream 165709 28194379 ~ 28213070 (-)
LOC111195343 LOC108434908 other upstream 547437 28576107 ~ 28586222 (-)
G193541 NA other upstream 568885 28597555 ~ 28598638 (-)
G193737 NA other upstream 2137091 30165761 ~ 30180126 (-)
spcs1 spcs1,LOC107680421,LOC107744856 other upstream 2781124 30809794 ~ 30830957 (-)

Expression


Co-expression Network