LOC103028137 (LOC103028137,LOC108436315,LOC104939458,LOC108254806,LOC103386138)


Basic Information

Item Value
gene id LOC103028137
gene name LOC103028137,LOC108436315,LOC104939458,LOC108254806,LOC103386138
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 27962367 ~ 28008609 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247728.3
CACGCGGCGGAAAACAGCACAGCAGCTCGAGCAACGAAACACAGCGCAGCGAAGCGAAAGGGAAGGGAGGGTGAGGAGCGGCGGAAAGCAGCGGAACCCCAGCCCAATCCAGCCCATCCCAGCCCAGCACGCGTCAGCACGGTCACGGGGACTGCTGCGGTCAGTGAACGCGGCGCTGCAAGAACAATCTCTCCAGCAGCGTGTAACGGGCTGCGGGGCGACTCGCTCGTGCGCGCGCGCGGGGGGCACTAACTAACTCACGCTTACGGCAGCTAATAACTTGTCTAAAAGCAGAACCGCGAGCAGAAGGAGTAAAGGGGCACCTGTGGCGGGCGAGGAGCTCACACCGCGTGCAGAGGAGCAGCCGCGGGCTCGGCGGAGGCTCGTGTCTCGCGGTCAGACGCGGAGCAGAAGTTGctagttttttgttgttttgtttttgtagctctgcagagaaagagagagcgcgtGCGGgaggaagagcggaggggggcTGCAGGAATGTCCCAGAAGGAGAGACCCACTTTCTATCGGCAGGAGCTCAATAAGACCATATGGGAGGTTCCGGAGAGGTACCAGAACCTCTCCCCGGTGGGCTCGGGGGCTTATGGGTCGGTGTGCTCGGCGTATGACATCCAATCAGGGCTGAAGATCGCTGTGAAGAAACTGTCCCGACCTTTCCAGTCCATCATCCACGCCAAGCGCACTTACCGAGAGCTCCGGCTGCTTAAACACATGAAGCACGAGAATGTGATTGGCCTGCTggatgttttcacacctgccacCAACCTGGAGGAATTTAATGACGTGTACCTGGTGACTCACCTGATGGGCGCTGACCTCAACAACATCGTCAAATGCCAGAAGCTGACGGACGACCATGTGCAGTTCCTCATCTATCAGATTTTACGGGGCCTGAAGTACATCCACTCAGCGGACATCATCCACAGAGACCTAAAGCCTAGCAACCTGGCAGTAAATGAAGACTGTGAACTGAAGATTCTGGACTTTGGGCTGGCGAGGCACACAGACGACGAGATGACGGGCTACGTCGCAACGCGGTGGTACCGTGCCCCAGAGATCATGCTGAACTGGATGCACTACAACATGACGGtggatATCTGGTCCGTCGGCTGCATTATGGCAGAGCTTCTCACTGGACGGACACTCTTCCCTGGCACTGACCATATAAACCAGCTTCAGCAGATAATGCGCCTGACTGGAACTCCCCCAGCCTCACTAATAAGCAGGATGCCCAGCCACGAGGCCAGAAACTACATCAATTCCTTGCCACATATGCCAAAGAGGAACTTTGCTGATGTGTTCATTGGTGCAAACCCATTAGCTGTAGACCTCCTAGAGAAGATGCTGGTTCTGGACACAGATAAGCGGATCACAGCCTCGGAAGCCCTGGCCCACCCGTACTTTGCGCAGTACCATGATCCTGATGATGAACCAGAGGCCGATCCATATGACCAGAGCTTTGAGAGCCGGGAGCTGGATATCGAAGAGTGGAAAAGGCTGACCTATGAGGAGGTGCTTAGCTTTGAGCCACCGGTGTTTGATGGAGATGAGATGGAGTCCTGAGGAGCTGCTGCTCATCCCTTCCTGTTGTAGAACGACTGCAGGGTTCATCACCTCACGGACCCGCTCGTCTACGCGGGATAAACGCACGCAATGTGACGTTAAAGGAACAGATTGCCCAAAAAATGCCTTGTTCGCTAAATCCTGATTGAAAGATAACAGCCGCTGGTTAGCAATgcatagcattagctagctagcattcaTTGATTGTTAATCTTgctgtgtatttttttggtCAGACTGTTCCTTTAAAGTGCCTGTGCCATCTTTCAGTACTGGCTTCCTGAAGTTCAGAGACTTATATCTCCCCTCACACATGTGCTGTGCTATTTGTGaatggaggaaaaagaaaacatatttacacacacagacgtGCATACACACGTGCGTACATGGACTGGCCACTTCATTTAAAC
>XM_007247729.3
ACCACGCGGCGGAAAACAGCACAGCAGCTCGAGCAACGAAACACAGCGCAGCGAAGCGAAAGGGAAGGGAGGGTGAGGAGCGGCGGAAAGCAGCGGAACCCCAGCCCAATCCAGCCCATCCCAGCCCAGCACGCGTCAGCACGGTCACGGGGACTGCTGCGGTCAGTGAACGCGGCGCTGCAAGAACAATCTCTCCAGCAGCGTGTAACGGGCTGCGGGGCGACTCGCTCGTGCGCGCGCGCGGGGGGCACTAACTAACTCACGCTTACGGCAGCTAATAACTTGTCTAAAAGCAGAACCGCGAGCAGAAGGAGTAAAGGGGCACCTGTGGCGGGCGAGGAGCTCACACCGCGTGCAGAGGAGCAGCCGCGGGCTCGGCGGAGGCTCGTGTCTCGCGGTCAGACGCGGAGCAGAAGTTGctagttttttgttgttttgtttttgtagctctgcagagaaagagagagcgcgtGCGGgaggaagagcggaggggggcTGCAGGAATGTCCCAGAAGGAGAGACCCACTTTCTATCGGCAGGAGCTCAATAAGACCATATGGGAGGTTCCGGAGAGGTACCAGAACCTCTCCCCGGTGGGCTCGGGGGCTTATGGGTCGGTGTGCTCGGCGTATGACATCCAATCAGGGCTGAAGATCGCTGTGAAGAAACTGTCCCGACCTTTCCAGTCCATCATCCACGCCAAGCGCACTTACCGAGAGCTCCGGCTGCTTAAACACATGAAGCACGAGAATGTGATTGGCCTGCTggatgttttcacacctgccacCAACCTGGAGGAATTTAATGACGTGTACCTGGTGACTCACCTGATGGGCGCTGACCTCAACAACATCGTCAAATGCCAGAAGCTGACGGACGACCATGTGCAGTTCCTCATCTATCAGATTTTACGGGGCCTGAAGTACATCCACTCAGCGGACATCATCCACAGAGACCTAAAGCCTAGCAACCTGGCAGTAAATGAAGACTGTGAACTGAAGATTCTGGACTTTGGGCTGGCGAGGCACACAGACGACGAGATGACGGGCTACGTCGCAACGCGGTGGTACCGTGCCCCAGAGATCATGCTGAACTGGATGCACTACAACATGACGGtggatATCTGGTCCGTCGGCTGCATTATGGCAGAGCTTCTCACTGGACGGACACTCTTCCCTGGCACTGACCATATTGATCAGTTGAAGCTTATCATGCTACTCGTCGGAACCCCAGGGCCCGAGCTCTTGATGAAAATATCTTCAGAGTCTGCCAGAAACTACATCAATTCCTTGCCACATATGCCAAAGAGGAACTTTGCTGATGTGTTCATTGGTGCAAACCCATTAGCTGTAGACCTCCTAGAGAAGATGCTGGTTCTGGACACAGATAAGCGGATCACAGCCTCGGAAGCCCTGGCCCACCCGTACTTTGCGCAGTACCATGATCCTGATGATGAACCAGAGGCCGATCCATATGACCAGAGCTTTGAGAGCCGGGAGCTGGATATCGAAGAGTGGAAAAGGCTGACCTATGAGGAGGTGCTTAGCTTTGAGCCACCGGTGTTTGATGGAGATGAGATGGAGTCCTGAGGAGCTGCTGCTCATCCCTTCCTGTTGTAGAACGACTGCAGGGTTCATCACCTCACGGACCCGCTCGTCTACGCGGGATAAACGCACGCAATGTGACGTTAAAGGAACAGATTGCCCAAAAAATGCCTTGTTCGCTAAATCCTGATTGAAAGATAACAGCCGCTGGTTAGCAATgcatagcattagctagctagcattcaTTGATTGTTAATCTTgctgtgtatttttttggtCAGACTGTTCCTTTAAAGTGCCTGTGCCATCTTTCAGTACTGGCTTCCTGAAGTTCAGAGACTTATATCTCCCCTCACACATGTGCTGTGCTATTTGTGaatggaggaaaaagaaaacatatttacacacacagacgtGCATACACACGTGCGTACATGGACTGGCCACTTCATTTAAAC

Function

NR:

description
mitogen-activated protein kinase 14A isoform X2

GO:

id name namespace
GO:0000165 MAPK cascade biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004707 MAP kinase activity molecular_function

KEGG:

id description
K04441 P38; p38 MAP kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247728.3 False 2000 mRNA 0.54 12 27962367 28008607
XM_007247729.3 True 2002 mRNA 0.53 12 27962367 28008609

Neighbor

gene id symbol gene type direction distance location
LOC103045240 LOC108436365,LOC107592563,LOC107699336,LOC107680449,LOC107751004,LOC108254807 coding downstream 7315 27911675 ~ 27955052 (-)
kif21b kif21b coding downstream 87389 27757227 ~ 27874978 (-)
bcl2l15 NA coding downstream 508991 27445479 ~ 27453376 (-)
LOC103029919 NA coding downstream 658427 27301296 ~ 27303940 (-)
LOC103046766 LOC108436454 coding downstream 662796 27296666 ~ 27299571 (-)
b3galt6 b3galt6,LOC107592565,LOC107680432,LOC107699339,LOC107555998 coding upstream 15728 28024337 ~ 28028670 (-)
LOC103026702 hipk1,si:ch211-160o17.4,LOC108254861,LOC107680439 coding upstream 22077 28030686 ~ 28048695 (-)
LOC103044609 acap3b,LOC108254862,LOC107680440,LOC107714502 coding upstream 57273 28065882 ~ 28162362 (-)
LOC111195421 ddx19,LOC108411521,LOC108255077,LOC107680447,LOC107699345,LOC107572851,LOC107556002,LOC105931731 coding upstream 182111 28190720 ~ 28201222 (-)
LOC103026411 LOC107680412,LOC107751023,LOC107555990,LOC107714481,LOC107699319 coding upstream 208852 28217461 ~ 28224664 (-)
G193370 NA non-coding downstream 226256 27735902 ~ 27736111 (-)
G193369 NA non-coding downstream 230705 27731003 ~ 27731662 (-)
G193367 NA non-coding downstream 238262 27723860 ~ 27724105 (-)
G193223 NA non-coding downstream 455838 27488865 ~ 27506529 (-)
G193386 NA non-coding upstream 58865 28067474 ~ 28067681 (-)
G193411 NA non-coding upstream 157232 28165841 ~ 28166081 (-)
G193424 NA non-coding upstream 226556 28235165 ~ 28236469 (-)
G193426 NA non-coding upstream 235199 28243808 ~ 28244702 (-)
G193435 qrich1,LOC107729405,LOC107558890 non-coding upstream 308735 28317344 ~ 28318704 (-)
LOC103046149 LOC102777140,LOC108436414,LOC102208887,LOC105027122,LOC108280970,LOC103144351,LOC107751002 other downstream 261036 27425042 ~ 27701331 (-)
LOC111195340 NA other downstream 570796 27390794 ~ 27391571 (-)
G193097 NA other downstream 929278 27031663 ~ 27033089 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other downstream 1238261 26711253 ~ 26724106 (-)
LOC111195415 tfeb other downstream 2083714 25874910 ~ 25878653 (-)
tmem167b tmem167b other upstream 2382 28010991 ~ 28015612 (-)
LOC111195422 si:dkey-33m11.6,LOC108411515,LOC108255079,LOC107572850,LOC107714486,LOC107680422 other upstream 185770 28194379 ~ 28213070 (-)
LOC111195343 LOC108434908 other upstream 567498 28576107 ~ 28586222 (-)
G193541 NA other upstream 588946 28597555 ~ 28598638 (-)
G193737 NA other upstream 2157152 30165761 ~ 30180126 (-)

Expression


Co-expression Network