LOC103031188 (chia,LOC108435172,LOC108255197,LOC108255198)


Basic Information

Item Value
gene id LOC103031188
gene name chia,LOC108435172,LOC108255197,LOC108255198
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 27274657 ~ 27290319 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247738.3
GCATTGCACATAGGCAACATGGGCAAACTACTGATTTGTGTTGGACTGGCTCTCCTGCTGCACGTGCAGCTAGGATCCTCCTACATCCTGTCATGTTACTTCACCAACTGGGGACAGTACAGGCCTGGTGCAGGAAAGTACTTCCCCACCAACGTTGACCCTTGCCTGTGTGACCACCTGATCTACGCCTTTGCTGGCATGAACAACAACGAGATTGCCACTTACGAGTGGGATGATGTCAAGCTCTACGGCGAGTTCCAGGCCCTGAAGAACCAGAACAGCAACCTGAAGACCCTTCTGGCTATTGGTGGCTGGAACTTTGGTACCGCCAAgTTCTCTGCTATGGTGGCTTCCTCTGCTAACCGTCAGACCTTCATCAGCTCTGTGATCAAGTTCCTGAGGCAGTACGAGTTCGACGGTCTGGATATTGACTGGGAGTACCCTGGATCCCGTGGCAGCCCTGCTCAGGACAAACAGCTCTACACCACTCTTATGCAGGAAATGATGGCTGCTTTCGTTGCTGAGGGCAAGCAGACCAACCGTGCTCGTCTGATGCTGACCGCTGCCGTTTCTGCTGGCAAGAGCACCATCGACTCTGGATACCAGATCTCCCAGCTTGGCCAGATCCTGGACTACTTCCACGTCATGACCTATGACTTCCACGGCTCCTGGGAGACACAGACTGGTGAGAACAGCCCCCTGTACCAAGGACCAGCTGACACAGGCTCTTACATCTACTTCAACGTTAACTACGCCATGAACTACTGGAAGAGCAACGGTGCCCCCGCTGAGAAACTGCTCGTCGGCTTCCCCACCTACGGACACACCTTCATGCTGTCCAGCTCTTCCAACACTGGTGTCGGAGCCCCCACTGCTGGACCTGGACCCGCTGGAACCTACACCAGGCAGTCTGGATTCTGGGCTTACTATGAGATCTGTACCTTCCTGGCTCAGGGAGCCACTCAGGCCTGGGACACTCCCCAGGATGTGCCATACGCCTACAGCAGCAGCAACGTCTGGGTCGGCTATGACAACATCAAGAGCTTCAACATTAAGATTGATTGGCTGAAGAAGAACAACTTCGGTGGTGCCATGGTTTGGTCTCTGGATCTGGACGACTTCAGCGGAACCTTCTGCAACCAGGGCAAATACCCTCTGATCAACACCATCAAGACCGGCCTGGGAACTGGACAGAGTTGCACCGCCCCTTCCAACCCCCTGCCCCCAGTTACCGCCGCCCCAGCCACTGCTGCCCCATCCTCTGGTGGAGGCAGCAGCGGTGGCAGCAGCGGTGGCAGCTCCAGCGGCGGCAGTGGCTTCTGTGCTGGCAAGTCCAACGGCCTGTACCCCAACCCCACCAACAAGAACCAGTTCTACAGCTGCGACCAGGGCAAAACCTACCTCGAGCACTGCGCCACCGGCCTGGTCTTCGATTCCTCCTGCTCTTGCTGTAACTGGGCTTAAACCCAAGTCCGGAAGTTTGGAGTTCCCCCAGGCTACTCTGCACGTGATTCGTCTGATTGGTCAATAGTAATGTTAATCTCTGTtccaaaataaaggaaaatccAGCAAAGCCAAA
>XM_022682726.1
AAACAAGAACCTGAGTCGCAGCAGCTGCCTCCAAATGATGTATCTGCAAGCGCTTCTCCATGTGCGAAGAGCGTCCACGGACTGGCTCTCCTGCTGCACGTGCAGCTAGGATCCTCCTACATCCTGTCATGTTACTTCACCAACTGGGGACAGTACAGGCCTGGTGCAGGAAAGTACTTCCCCACCAACGTTGACCCTTGCCTGTGTGACCACCTGATCTACGCCTTTGCTGGCATGAACAACAACGAGATTGCCACTTACGAGTGGGATGATGTCAAGCTCTACGGCGAGTTCCAGGCCCTGAAGAACCAGAACAGCAACCTGAAGACCCTTCTGGCTATTGGTGGCTGGAACTTTGGTACCGCCAAgTTCTCTGCTATGGTGGCTTCCTCTGCTAACCGTCAGACCTTCATCAGCTCTGTGATCAAGTTCCTGAGGCAGTACGAGTTCGACGGTCTGGATATTGACTGGGAGTACCCTGGATCCCGTGGCAGCCCTGCTCAGGACAAACAGCTCTACACCACTCTTATGCAGGAAATGATGGCTGCTTTCGTTGCTGAGGGCAAGCAGACCAACCGTGCTCGTCTGATGCTGACCGCTGCCGTTTCTGCTGGCAAGAGCACCATCGACTCTGGATACCAGATCTCCCAGCTTGGCCAGATCCTGGACTACTTCCACGTCATGACCTATGACTTCCACGGCTCCTGGGAGACACAGACTGGTGAGAACAGCCCCCTGTACCAAGGACCAGCTGACACAGGCTCTTACATCTACTTCAACGTTAACTACGCCATGAACTACTGGAAGAGCAACGGTGCCCCCGCTGAGAAACTGCTCGTCGGCTTCCCCACCTACGGACACACCTTCATGCTGTCCAGCTCTTCCAACACTGGTGTCGGAGCCCCCACTGCTGGACCTGGACCCGCTGGAACCTACACCAGGCAGTCTGGATTCTGGGCTTACTATGAGATCTGTACCTTCCTGGCTCAGGGAGCCACTCAGGCCTGGGACACTCCCCAGGATGTGCCATACGCCTACAGCAGCAGCAACGTCTGGGTCGGCTATGACAACATCAAGAGCTTCAACATTAAGATTGATTGGCTGAAGAAGAACAACTTCGGTGGTGCCATGGTTTGGTCTCTGGATCTGGACGACTTCAGCGGAACCTTCTGCAACCAGGGCAAATACCCTCTGATCAACACCATCAAGACCGGCCTGGGAACTGGACAGAGTTGCACCGCCCCTTCCAACCCCCTGCCCCCAGTTACCGCCGCCCCAGCCACTGCTGCCCCATCCTCTGGTGGAGGCAGCAGCGGTGGCAGCAGCGGTGGCAGCTCCAGCGGCGGCAGTGGCTTCTGTGCTGGCAAGTCCAACGGCCTGTACCCCAACCCCACCAACAAGAACCAGTTCTACAGCTGCGACCAGGGCAAAACCTACCTCGAGCACTGCGCCACCGGCCTGGTCTTCGATTCCTCCTGCTCTTGCTGTAACTGGGCTTAAACCCAAGTCCGGAAGTTTGGAGTTCCCCCAGGCTACTCTGCACGTGATTCGTCTGATTGGTCAATAGTAATGTTAATCTCTGTtccaaaataaaggaaaatccAGCAAAGCCAAA
>XM_022682727.1
GGGTCAGCTGCTGCAGAGCGCCTACCCGCGGCCTGGAGGGTCCAAACAATACACGGACTGGCTCTCCTGCTGCACGTGCAGCTAGGATCCTCCTACATCCTGTCATGTTACTTCACCAACTGGGGACAGTACAGGCCTGGTGCAGGAAAGTACTTCCCCACCAACGTTGACCCTTGCCTGTGTGACCACCTGATCTACGCCTTTGCTGGCATGAACAACAACGAGATTGCCACTTACGAGTGGGATGATGTCAAGCTCTACGGCGAGTTCCAGGCCCTGAAGAACCAGAACAGCAACCTGAAGACCCTTCTGGCTATTGGTGGCTGGAACTTTGGTACCGCCAAgTTCTCTGCTATGGTGGCTTCCTCTGCTAACCGTCAGACCTTCATCAGCTCTGTGATCAAGTTCCTGAGGCAGTACGAGTTCGACGGTCTGGATATTGACTGGGAGTACCCTGGATCCCGTGGCAGCCCTGCTCAGGACAAACAGCTCTACACCACTCTTATGCAGGAAATGATGGCTGCTTTCGTTGCTGAGGGCAAGCAGACCAACCGTGCTCGTCTGATGCTGACCGCTGCCGTTTCTGCTGGCAAGAGCACCATCGACTCTGGATACCAGATCTCCCAGCTTGGCCAGATCCTGGACTACTTCCACGTCATGACCTATGACTTCCACGGCTCCTGGGAGACACAGACTGGTGAGAACAGCCCCCTGTACCAAGGACCAGCTGACACAGGCTCTTACATCTACTTCAACGTTAACTACGCCATGAACTACTGGAAGAGCAACGGTGCCCCCGCTGAGAAACTGCTCGTCGGCTTCCCCACCTACGGACACACCTTCATGCTGTCCAGCTCTTCCAACACTGGTGTCGGAGCCCCCACTGCTGGACCTGGACCCGCTGGAACCTACACCAGGCAGTCTGGATTCTGGGCTTACTATGAGATCTGTACCTTCCTGGCTCAGGGAGCCACTCAGGCCTGGGACACTCCCCAGGATGTGCCATACGCCTACAGCAGCAGCAACGTCTGGGTCGGCTATGACAACATCAAGAGCTTCAACATTAAGATTGATTGGCTGAAGAAGAACAACTTCGGTGGTGCCATGGTTTGGTCTCTGGATCTGGACGACTTCAGCGGAACCTTCTGCAACCAGGGCAAATACCCTCTGATCAACACCATCAAGACCGGCCTGGGAACTGGACAGAGTTGCACCGCCCCTTCCAACCCCCTGCCCCCAGTTACCGCCGCCCCAGCCACTGCTGCCCCATCCTCTGGTGGAGGCAGCAGCGGTGGCAGCAGCGGTGGCAGCTCCAGCGGCGGCAGTGGCTTCTGTGCTGGCAAGTCCAACGGCCTGTACCCCAACCCCACCAACAAGAACCAGTTCTACAGCTGCGACCAGGGCAAAACCTACCTCGAGCACTGCGCCACCGGCCTGGTCTTCGATTCCTCCTGCTCTTGCTGTAACTGGGCTTAAACCCAAGTCCGGAAGTTTGGAGTTCCCCCAGGCTACTCTGCACGTGATTCGTCTGATTGGTCAATAGTAATGTTAATCTCTGTtccaaaataaaggaaaatccAGCAAAGCCAAA

Function

symbol description
chia Enables chitinase activity and kinase binding activity. Involved in chitin catabolic process; positive regulation of chemokine production; and production of molecular mediator involved in inflammatory response. Located in extracellular space. Implicated in asthma. Biomarker of asthma and sinusitis.

NR:

description
acidic mammalian chitinase isoform X1

GO: NA

KEGG:

id description
K01183 E3.2.1.14; chitinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247738.3 False 1579 mRNA 0.55 11 27274657 27280054
XM_022682726.1 True 1615 mRNA 0.55 11 27274657 27290319
XM_022682727.1 False 1591 mRNA 0.56 11 27274657 27283949

Neighbor

gene id symbol gene type direction distance location
LOC103032351 LOC108435192 coding downstream 64341 27197051 ~ 27210316 (-)
prelp prelp coding downstream 103662 27162747 ~ 27170995 (-)
LOC103047370 NA coding downstream 121331 27147714 ~ 27153326 (-)
il10 NA coding downstream 140801 27129152 ~ 27133856 (-)
LOC103035733 foxp4,LOC107739274,LOC107728618 coding downstream 924952 26114437 ~ 26349705 (-)
LOC103046766 LOC108436454 coding upstream 6347 27296666 ~ 27299571 (-)
LOC103029919 NA coding upstream 10977 27301296 ~ 27303940 (-)
bcl2l15 NA coding upstream 155160 27445479 ~ 27453376 (-)
kif21b kif21b coding upstream 466908 27757227 ~ 27874978 (-)
LOC103045240 LOC108436365,LOC107592563,LOC107699336,LOC107680449,LOC107751004,LOC108254807 coding upstream 621356 27911675 ~ 27955052 (-)
G193160 NA non-coding downstream 34755 27239426 ~ 27239902 (-)
G193156 NA non-coding downstream 44355 27230099 ~ 27230302 (-)
G193110 NA non-coding downstream 135421 27138083 ~ 27139236 (-)
G193085 NA non-coding downstream 275584 26927108 ~ 26999073 (-)
G193056 NA non-coding downstream 374843 26885836 ~ 26899814 (-)
G193154 NA non-coding upstream 5409 27295728 ~ 27305659 (-)
G193178 NA non-coding upstream 34087 27324406 ~ 27324839 (-)
G193179 NA non-coding upstream 38423 27328742 ~ 27331162 (-)
G193181 NA non-coding upstream 65659 27355978 ~ 27356313 (-)
G193185 NA non-coding upstream 79856 27370175 ~ 27370433 (-)
G193097 NA other downstream 241568 27031663 ~ 27033089 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other downstream 550551 26711253 ~ 26724106 (-)
LOC111195415 tfeb other downstream 1396004 25874910 ~ 25878653 (-)
G192815 mdm4 other downstream 2057107 25211675 ~ 25217550 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other downstream 3168759 24039246 ~ 24105898 (-)
LOC111195340 NA other upstream 100475 27390794 ~ 27391571 (-)
LOC103046149 LOC102777140,LOC108436414,LOC102208887,LOC105027122,LOC108280970,LOC103144351,LOC107751002 other upstream 134723 27425042 ~ 27701331 (-)
tmem167b tmem167b other upstream 720672 28010991 ~ 28015612 (-)
LOC111195422 si:dkey-33m11.6,LOC108411515,LOC108255079,LOC107572850,LOC107714486,LOC107680422 other upstream 904060 28194379 ~ 28213070 (-)
LOC111195343 LOC108434908 other upstream 1285788 28576107 ~ 28586222 (-)

Expression


Co-expression Network