prelp (prelp)


Basic Information

Item Value
gene id prelp
gene name prelp
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 27162747 ~ 27170995 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247741.3
gaaatagacacACACAGCATTGTTGACCTTCAACAGAGTGAACAGAGTAAAAGGCAGAGAAGTAAAGACCCAATAGCCAGGCTGCCTCACGGAGGAGAGCAAAGACAGCAAAAGggggtgagagagggagagagagagagagagagaggagagaaagaagggagggacagagagagagggagagagaaggaggacaGAAACCCCAAAGTGTGAAGGAGACGACTTGAAAAGGCATAAAAGAAGAGGGCAAGTACCAGCAGCAGGACCATGAAGGCTGGGCTTGGATATTGCTCTCTGCTAGTCCTTCTCCTGACCACAGATGTCTTGGGACAGCGTGCAAGGCCACGTCCAAAACCCCCAACCACAAGGAAACCTTCTCCACCTGTACCAAAGAGACCTTCTCCTTCAACTCCCAAAAAGGAACTCGAACCTCAGGAGCCCACTGATTTTCCCCCTCCCATCCTTGGTCCACCTTCCTCCTTCGCAGACTGTCCTAGAGAGTGCTTCTGTCCACCTTCCTACCCAAATGCTCTTTACTGCGAGAACCGCAACCTCCGCAAGGTCCCAATCATCCCCTTTCGCACCCATTATCTCTACCTACAGAACAATTACATCGATTCAGTGAGTGCAGACTCCTTCAACAATGCCACAGACTTGAAGTGGATAAATTTGGGGAACAACCGCGTTCGCTCCATAGACAAACAAGTGTTTGAGAAGCTGCCAAATTTGCTGTATCTCTACATGGAAAGAAACCAGTTAAAGGAAGTGCCCAGCGCTCTGCCAACTTCCCTGGAGCAGTTGCGACTTAGCCGCAACCAAATATCAAAGGTCGCTCCGGGAGCTTTCAGCAAGATGGAACACCTCGTACTCCTGGATCTGCACCACAACAAGATCAGCGACAGCAACCTGGGCAAGAACGTCTTCAAAGATCTTAAGAATCTAATACAGCTCAACCTGGCACACAACATCCTCAGGAAGATGCCCCCAAATATACCCAACAGCATCTTCCAGTTGTTTTTGGACAGAAACAACATTGAGGACATTCCTGAGAACTATTTCAAAGACTTTTCGAATCTAGCTTTTGTTAGACTCAATTACAACCAGCTGAGCGACAAAGGCCTCCCGAAGATGGTGTTTAATGTCAGCACACTGCTTGATTTGCACTTGGCTCACAACCAGTTGAGCACTGTTCCACTGTTCAACGGCCACCTGGAGCATCTACAcctcaacaacaacaatattGAGAGTCTAAATGGTACGGAGATCTGTCCCTTTAAGCCAAACGGGGATGTGCATGACAATGACAGCGTGCCCAGGCTCAGGTATTTGCGGCTGGATGGCAACCACTTGAGTCCCCCTGTCCCCATGGATGTCATCATGTGCTTTAGACATCTCCACTCCATCGTGATCTAGAAGGAATGTCTGGATCCTTTTTGAAATTGAAGTTCTTGAACACGTTCATGcatgtatatacatatgtgCACAGCAGCGGCGGCCCTGTCCACTTGACAGTACTGACTGACTCAAGCAGTACTATGGAAAACACAAGAAATGGctaaatcttttcttttttttttcgtcagGAATGTATTTTTGAGCTTCATgagcttaaaaaatatttattaaatattaaaaataggaGTAACACTTTTGAGCATGAATATTTCTGCATTTAAGATatgtttatgtattatatatacagttctcGTGATGCAACAGTATTATTAAAACGATGAGGTAAAATATCCTTGAAATCAAGGTACATTAACAGACATTCTGTACGACattacagtggtgcttgaaagtttgtaaaCTACAGAATATAGAATTTTTGATAGatccctgttctttaaataaaacaggctctGTCTATTCATGTCTGATTGTCCTCCCattgattgaaaacacctgACTCTAATTTCAACTTTAAACTAACTGCTAATcctagaggttcacatacttaAGCCATTTACAAGTATGTACTGATGGATCAACTGggtcaataaataaattaccaagtataatatttttgtctgttttgtttaacttgcttctctttatctacttttaggacttgaaATATGTGAAAGATCTGATGaagttttaggtcatatttatgcagaaatatagaaaattctgaagggttcacaaactttcaagcaccactgtatatCTACAATGTGGTTACAAACAAACTGTAGAACACtaaacattaaactaaaatgactggaattattcagtattctgaTCACCTGCTCCCAAACTTAGTTTACTATAAGTCATGTCTGATAAtaattt

Function

symbol description
prelp Predicted to be an extracellular matrix structural constituent. Predicted to be located in collagen-containing extracellular matrix. Predicted to be active in extracellular space. Is expressed in cranial ganglion; myotome; and pectoral fin. Orthologous to human PRELP (proline and arginine rich end leucine rich repeat protein).

NR:

description
PREDICTED: prolargin

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
K08125 PRELP; prolargin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247741.3 True 2298 mRNA 0.42 3 27162747 27170995

Neighbor

gene id symbol gene type direction distance location
LOC103047370 NA coding downstream 9421 27147714 ~ 27153326 (-)
il10 NA coding downstream 28891 27129152 ~ 27133856 (-)
LOC103035733 foxp4,LOC107739274,LOC107728618 coding downstream 813042 26114437 ~ 26349705 (-)
LOC103036054 mdfi,LOC103036054,LOC107548515,LOC107675846,LOC107728619 coding downstream 1077269 26008796 ~ 26085478 (-)
ppfia4 ppfia4 coding downstream 1392028 25587726 ~ 25770719 (-)
LOC103032351 LOC108435192 coding upstream 26056 27197051 ~ 27210316 (-)
LOC103031188 chia,LOC108435172,LOC108255197,LOC108255198 coding upstream 103662 27274657 ~ 27290319 (-)
LOC107197599 NA coding upstream 116225 27287220 ~ 27292809 (-)
LOC103046766 LOC108436454 coding upstream 125671 27296666 ~ 27299571 (-)
LOC103029919 NA coding upstream 130301 27301296 ~ 27303940 (-)
G193110 NA non-coding downstream 23511 27138083 ~ 27139236 (-)
G193085 NA non-coding downstream 163674 26927108 ~ 26999073 (-)
G193056 NA non-coding downstream 262933 26885836 ~ 26899814 (-)
G193062 NA non-coding downstream 263343 26898271 ~ 26899404 (-)
G193049 NA non-coding downstream 286127 26876370 ~ 26876620 (-)
G193156 NA non-coding upstream 59104 27230099 ~ 27230302 (-)
G193160 NA non-coding upstream 68431 27239426 ~ 27239902 (-)
G193165 NA non-coding upstream 93472 27264467 ~ 27299949 (-)
G193154 NA non-coding upstream 124733 27295728 ~ 27305659 (-)
G193178 NA non-coding upstream 153411 27324406 ~ 27324839 (-)
G193097 NA other downstream 129658 27031663 ~ 27033089 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other downstream 438641 26711253 ~ 26724106 (-)
LOC111195415 tfeb other downstream 1284094 25874910 ~ 25878653 (-)
G192815 mdm4 other downstream 1945197 25211675 ~ 25217550 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other downstream 3056849 24039246 ~ 24105898 (-)
LOC111195340 NA other upstream 219799 27390794 ~ 27391571 (-)
LOC103046149 LOC102777140,LOC108436414,LOC102208887,LOC105027122,LOC108280970,LOC103144351,LOC107751002 other upstream 254047 27425042 ~ 27701331 (-)
tmem167b tmem167b other upstream 839996 28010991 ~ 28015612 (-)
LOC111195422 si:dkey-33m11.6,LOC108411515,LOC108255079,LOC107572850,LOC107714486,LOC107680422 other upstream 1023384 28194379 ~ 28213070 (-)
LOC111195343 LOC108434908 other upstream 1405112 28576107 ~ 28586222 (-)

Expression


Co-expression Network