LOC103032351 (LOC108435192)


Basic Information

Item Value
gene id LOC103032351
gene name LOC108435192
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 27197051 ~ 27210316 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247742.3
AGACTGAAGGGTATGGAATGGAACTGATGAGGGACTCCGGGGCCTTGGCCATGAAAGAGTGAGGAATGCTTCTGTGGCTGGAGAAGCGCCGTAGGTTGCCTGTGCAAACAGCTGGCAGTAACCTGTACAAGCTGCCGCCGCAAGAAGAGCGAGACTAGCCCTACTGTATCTCTTCTCATCTCTGCGGACTCAGAAAACATCAGTCGCCTGCAGAAACCGAGACAGGCCCAGCAATGGATGTCATGCTGCTTGTCCTAATACTCTCTGTGTGTGGGCCGGTGTGGGCCACCACCATTGACATGGACTATGGTGGCGTTCCCCTGTGGATCAACCGCTTTCTGGGCGAGCCGAGCGTCCTGAGCTTGCGGGATCGGATGGAGCCGGGCTGGTTTCGAGCTGTCAACACCCAGAGTTGCCCTCTAGAATGCGACTGTCCGATCCAGTGGCCCACGGCCTTGTACTGCGAGCACCGAGGCCTGCAGCACCTTCCGGAAGGCCTACCATCCAGGATCCAGTACCTCTTCCTCCAAGGCAACGCGTTGACTGGCTTCAATTCTGGAGTCTTCGCCAATACGTCCAGTTTACGATGGCTTTTCTTGGACCGCAATCAGATTCTCAGCGAGAGGCTTGAACCAACGCTACTGTCCAATCTGACACGATTAGTGAATCTCTTCATGAACCATAACAACCTGACAGAGGTGCCAACCGGCCTGCCAAGAGGACTCAAGCAGCTCAGACTTGCGTACAACCATATTGAGAAGATTTCTCCAGGAGCTTTCCAGGATCTACGGAATCTGACGCTGCTTCTGCTGCAAGGCAATCGGCTGAAGACTGTTAGCGAGGCAGACTTTAAAGGTCTCCCAATCCTGAACTTGCTGGATCTCAGCCACAACAACCTGGAGACGTTCCCCAAGCATCTGCCTCCATCTGTCCAACAGCTCTACCTCTCCGGCAACGACCTGACCGGCCTGTCCGAGGACTGCCTCCAGGACTTTAACGGACTCCGCTATTTACGTCTTAGCCGCAACAGGCTAAAGAACCAAGATCTGGCCTCTGCTGCCTTCAACGTGACCTCACTGGTGGAACTGGACCTGTCCTACAACCAGCTCACTCAGATCCCAGTGGTCCCAACCAGCCTCCAATACCTCTATCTGGAGGTCAACCACATCAGAGAATTTAACGTGAGCAGCCTCTGCAGGACAGTGGGCCCAACATCCTACTCACGCTTGAAGATCCTGAGACTGGACGGCAACAAGATGGCGTATCATCAGCTGCCACCTGACTGGGTGTACTGTCTGAGAGTGCTTCACAACATCTACATCTGATCTTTGTCTTTTTAGCTCAGTTTATCTCAACTCAGTGTATCTTAACTCTTGAGTGCAGCTTAACCACTTCGCTTCGCTAGATGGTCTAGATTAATCAAATTTGGTGAACATGATAtttgtggacacaccttctaataaaaacacactctgACACACTGTCCATGTACTGTAACTctcattataccacagttagttccgaccctgcaaagTGATTGGCTGAACGACGCTTTATGAGTGCCGCTATCAGACGGTAATGCACTGAAACTGAAGCtgtccatgtattactccgtcACATACAAGTAACCTAACAGTGatacagcgcttacaagccaaacagcgcagctacaaacagtgCAGCAATGGAACTTTTTTAACTCGttttttctcgtcctctttacgtgagaatctttcaataaacagagaCAGTTGAATGgtggtataattgcaataatacactcgaggttcgtgctgtAACGTGTAATGATCTACGACTGCAACATAGCAGTTCCAATTTTCCACGTtatagcactctctctctcgtttattgcttaaaaagtaaaaaaagtactgcccaaagaataggactctctggagcagataaagtgcatgaacctattggcaccatgactAATGATAGGTGTGTCATTAGTCTTACAGTAGAAGGGATTAGGTCTGTgaagcattgagctgtggagcagtgggagAACCATGTTCTCTgaaatggtggtgctccatccagtactttttggCTGAGTGGGGAATTGTTACCTCACCAACTCTCAGCTTTTGTTGTTACTGAATGCAGTCAATCTAATTcttggagaaaaaaacactcttaaatAGCCTTGATTtagaaagaaacaataaatgaactgGTGTCCCAATAGTTTTGTCCATCTAGTGTATAAATGCTACATGCTTCTGGTTTGTATATCTGCTGCAAAATTGTTCAgagatttattaaacacagcatATATATCAGATTTAACAGGTCTGTAAGTTTTGTGTAGATGTTGTATGTGCTAATGTCTCTTACTGGACATGCTTCAAATTATtgctatccaatgaaaaacaagtctcCATTTCAATCTCATTTTTGTCTAAGttactacactgtaagcccagataagttgaaattacttaaaaaaatgatttaacttttttt
>XM_022682725.1
GAGACTGAAGGGTATGGAATGGAACTGATGAGGGACTCCGGGGCCTTGGCCATGAAAGAGTGAGGAATGCTTCTGTGGCTGGAGAAGCGCCGTAGGTTGCCTGTGCAAACAGCTGGCAGTAACCTGTACAAGCTGCCGCCGCAAGAAGAGCGAGACTAGCCCTACTGTATCTCTTCTCATCTCTGCGGACTCAGAAAACATCAGTCGCCTGCAGAAACCGAGGCCCAGCAATGGATGTCATGCTGCTTGTCCTAATACTCTCTGTGTGTGGGCCGGTGTGGGCCACCACCATTGACATGGACTATGGTGGCGTTCCCCTGTGGATCAACCGCTTTCTGGGCGAGCCGAGCGTCCTGAGCTTGCGGGATCGGATGGAGCCGGGCTGGTTTCGAGCTGTCAACACCCAGAGTTGCCCTCTAGAATGCGACTGTCCGATCCAGTGGCCCACGGCCTTGTACTGCGAGCACCGAGGCCTGCAGCACCTTCCGGAAGGCCTACCATCCAGGATCCAGTACCTCTTCCTCCAAGGCAACGCGTTGACTGGCTTCAATTCTGGAGTCTTCGCCAATACGTCCAGTTTACGATGGCTTTTCTTGGACCGCAATCAGATTCTCAGCGAGAGGCTTGAACCAACGCTACTGTCCAATCTGACACGATTAGTGAATCTCTTCATGAACCATAACAACCTGACAGAGGTGCCAACCGGCCTGCCAAGAGGACTCAAGCAGCTCAGACTTGCGTACAACCATATTGAGAAGATTTCTCCAGGAGCTTTCCAGGATCTACGGAATCTGACGCTGCTTCTGCTGCAAGGCAATCGGCTGAAGACTGTTAGCGAGGCAGACTTTAAAGGTCTCCCAATCCTGAACTTGCTGGATCTCAGCCACAACAACCTGGAGACGTTCCCCAAGCATCTGCCTCCATCTGTCCAACAGCTCTACCTCTCCGGCAACGACCTGACCGGCCTGTCCGAGGACTGCCTCCAGGACTTTAACGGACTCCGCTATTTACGTCTTAGCCGCAACAGGCTAAAGAACCAAGATCTGGCCTCTGCTGCCTTCAACGTGACCTCACTGGTGGAACTGGACCTGTCCTACAACCAGCTCACTCAGATCCCAGTGGTCCCAACCAGCCTCCAATACCTCTATCTGGAGGTCAACCACATCAGAGAATTTAACGTGAGCAGCCTCTGCAGGACAGTGGGCCCAACATCCTACTCACGCTTGAAGATCCTGAGACTGGACGGCAACAAGATGGCGTATCATCAGCTGCCACCTGACTGGGTGTACTGTCTGAGAGTGCTTCACAACATCTACATCTGATCTTTGTCTTTTTAGCTCAGTTTATCTCAACTCAGTGTATCTTAACTCTTGAGTGCAGCTTAACCACTTCGCTTCGCTAGATGGTCTAGATTAATCAAATTTGGTGAACATGATAtttgtggacacaccttctaataaaaacacactctgACACACTGTCCATGTACTGTAACTctcattataccacagttagttccgaccctgcaaagTGATTGGCTGAACGACGCTTTATGAGTGCCGCTATCAGACGGTAATGCACTGAAACTGAAGCtgtccatgtattactccgtcACATACAAGTAACCTAACAGTGatacagcgcttacaagccaaacagcgcagctacaaacagtgCAGCAATGGAACTTTTTTAACTCGttttttctcgtcctctttacgtgagaatctttcaataaacagagaCAGTTGAATGgtggtataattgcaataatacactcgaggttcgtgctgtAACGTGTAATGATCTACGACTGCAACATAGCAGTTCCAATTTTCCACGTtatagcactctctctctcgtttattgcttaaaaagtaaaaaaagtactgcccaaagaataggactctctggagcagataaagtgcatgaacctattggcaccatgactAATGATAGGTGTGTCATTAGTCTTACAGTAGAAGGGATTAGGTCTGTgaagcattgagctgtggagcagtgggagAACCATGTTCTCTgaaatggtggtgctccatccagtactttttggCTGAGTGGGGAATTGTTACCTCACCAACTCTCAGCTTTTGTTGTTACTGAATGCAGTCAATCTAATTcttggagaaaaaaacactcttaaatAGCCTTGATTtagaaagaaacaataaatgaactgGTGTCCCAATAGTTTTGTCCATCTAGTGTATAAATGCTACATGCTTCTGGTTTGTATATCTGCTGCAAAATTGTTCAgagatttattaaacacagcatATATATCAGATTTAACAGGTCTGTAAGTTTTGTGTAGATGTTGTATGTGCTAATGTCTCTTACTGGACATGCTTCAAATTATtgctatccaatgaaaaacaagtctcCATTTCAATCTCATTTTTGTCTAAGttactacactgtaagcccagataagttgaaattacttaaaaaaatgatttaacttttttt

Function

NR:

description
PREDICTED: lumican-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247742.3 True 2490 mRNA 0.47 4 27197051 27210315
XM_022682725.1 False 2487 mRNA 0.47 4 27197051 27210316

Neighbor

gene id symbol gene type direction distance location
prelp prelp coding downstream 26056 27162747 ~ 27170995 (-)
LOC103047370 NA coding downstream 43725 27147714 ~ 27153326 (-)
il10 NA coding downstream 63195 27129152 ~ 27133856 (-)
LOC103035733 foxp4,LOC107739274,LOC107728618 coding downstream 847346 26114437 ~ 26349705 (-)
LOC103036054 mdfi,LOC103036054,LOC107548515,LOC107675846,LOC107728619 coding downstream 1111573 26008796 ~ 26085478 (-)
LOC103031188 chia,LOC108435172,LOC108255197,LOC108255198 coding upstream 64341 27274657 ~ 27290319 (-)
LOC107197599 NA coding upstream 76904 27287220 ~ 27292809 (-)
LOC103046766 LOC108436454 coding upstream 86350 27296666 ~ 27299571 (-)
LOC103029919 NA coding upstream 90980 27301296 ~ 27303940 (-)
bcl2l15 NA coding upstream 235163 27445479 ~ 27453376 (-)
G193110 NA non-coding downstream 57815 27138083 ~ 27139236 (-)
G193085 NA non-coding downstream 197978 26927108 ~ 26999073 (-)
G193056 NA non-coding downstream 297237 26885836 ~ 26899814 (-)
G193062 NA non-coding downstream 297647 26898271 ~ 26899404 (-)
G193049 NA non-coding downstream 320431 26876370 ~ 26876620 (-)
G193156 NA non-coding upstream 19783 27230099 ~ 27230302 (-)
G193160 NA non-coding upstream 29110 27239426 ~ 27239902 (-)
G193165 NA non-coding upstream 54151 27264467 ~ 27299949 (-)
G193154 NA non-coding upstream 85412 27295728 ~ 27305659 (-)
G193178 NA non-coding upstream 114090 27324406 ~ 27324839 (-)
G193097 NA other downstream 163962 27031663 ~ 27033089 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other downstream 472945 26711253 ~ 26724106 (-)
LOC111195415 tfeb other downstream 1318398 25874910 ~ 25878653 (-)
G192815 mdm4 other downstream 1979501 25211675 ~ 25217550 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other downstream 3091153 24039246 ~ 24105898 (-)
LOC111195340 NA other upstream 180478 27390794 ~ 27391571 (-)
LOC103046149 LOC102777140,LOC108436414,LOC102208887,LOC105027122,LOC108280970,LOC103144351,LOC107751002 other upstream 214726 27425042 ~ 27701331 (-)
tmem167b tmem167b other upstream 800675 28010991 ~ 28015612 (-)
LOC111195422 si:dkey-33m11.6,LOC108411515,LOC108255079,LOC107572850,LOC107714486,LOC107680422 other upstream 984063 28194379 ~ 28213070 (-)
LOC111195343 LOC108434908 other upstream 1365791 28576107 ~ 28586222 (-)

Expression


Co-expression Network