LOC103036054 (mdfi,LOC103036054,LOC107548515,LOC107675846,LOC107728619)


Basic Information

Item Value
gene id LOC103036054
gene name mdfi,LOC103036054,LOC107548515,LOC107675846,LOC107728619
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 26008796 ~ 26085478 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247753.3
GAGTGATTTCCTGTGGAGGACAAGTTCAGAGCTGAGGAGCTGCTGCAGGCTCTCGGAGTTCGCCTTCAGAGCGCGAGCAGAACTTCTGCAGAACTTTAGGAACTTTTACACAACTTTCTTCACCAGAACTTTTGGCTACAGCTTTTAATTAACTTGCTCGTGCGTTGGTTGTTGTTCTTCttcgtgttgttttgtttttcttctctgagaggaggaggaggaggaactcTGACTGACTGGGCTCGAGCGCAGTTTTGCTGTCAGCTTTGTGGAGCTGGACACTTTTGGACAAAAGCAGGAGAGCTGCGCGCGAGCGGGTGCAGTAAGTGCTCGGACAGCATGTTTGGACAGAGCTGTGAAAGTGGTGCTCTGAGCTtctgatgaagaggaggaggtgaggaagagaaagaggagcGGAACCGTTAGAAGTTTCTCCTCGTGCAGGAGGGGAGCGAAGGATATGCGTTAGCCGAGGAGCGCGTGCTGCGTGTAGAAGggTAGTTTCTGGTCACCTGGCTTGCAGCTCCAGAGCAGAtgtgggaggaggaggagcacaGCCCCAGTGCCAGCTTGCCTGAACCTCCAGATGGGGCCTGTCCTGCCCCTGAGACATTGCCAGAGGAGCCCTCTGCTGCCCCCAGCTCAGGTGGAGATGGAAGCAGCCACACCCCAGCCCAGGAGCTTCCCCCACAACCTACGCCCTCCGTGCCTCCTACGCCCACCATGCCCCCAACACCCCCCACATCCCCTACGCCCCCCAACACGGAGAAACCATCCAATCCAGAGAAtggcaacaacaacaacagcctGTCACAGCCGGACTTCTGCAAGACACCCAGCAAAAGCATAACATGTCAACCTCAGGCCAGGTCCACGCCCTTGCCTTCATCTTTATCCAGCTCATCAGAGGCTGCTGCGCTCCTGAGGAATGGCAGCAAGCCCATCACCCACCAGGCTCACAGTAATGGAGTCAAGAACGGAGCTCCGCTACTGCGGGCGGTGTCTTCGTCCTCCTCCACTTCGACGGCGCCTCATAAGAACACAAAGAAGCTGCAGTCGAACCCGTCCATCAACAGCCAGAGTAGCAAGAGGAGCAAAGGGAGCTCCAAGTCTAACAGCTCCCAAATCCCCACAGAGGCCCAAGATGATTGCTGCGTCCACTGCATCCTGGCCTGCCTCTTCTGCGAGTTTCTAACCCTGTGTAACATCGTGCTGGACTGTGCCACCTGCGGCTCCTGTGCCTCGGACGACTcgtgcttctgctgctgctgtgcctCGGAGGAGTGCGGTGACTGTGACCTGCCCTGTGACATGGACTGCGGCATCATCGACGCCTGCTGCGAGTCCGCCGACTGCCTGGAGATCTGCATGGAGTGCTGCGGCCTTTGCTTCTCCTCATGAGAGCCCACTAGGGGGCAATGTGTCAATCGCACAGGACTCTTGAAACTTTGTGGCGATATGGGAGCAAACCAGGGCAGAACGGAACCAAAGAACACAAACCGAAGAAATGCAATCAGAGCACTTGTGGACGGCCTCGGAGACTGTAAGCAAGTGAGGAACTCTGTCGCTTCAAGAGTTTTCAGTTTGCGTTTGGATTTTGCGTAATCCTGGAATATTTCCTGCACATTGGAAATCTTGGACTGTATCGGTCGAATGGGTTCTCCGTAGAGCAGTGGCAAAGAACATCTACTTTTGAAAGGACAAGATGTTTCATTTATTGTGACTCCTTTTATTGTGACTGGACAATATCCCATTCAATGAAATTCTATTAAATCTATGCTACTATATACCTGTAAAACCAAAATGTCCAACCATTCTAGAGGTTCTGTAAGGGTATTGTTTTAAGAATCCTTTTTAagcactttcatttttttcaaagttCCTTTTAcaccaatgactgtagaaaacatggacaGTGCAACAGTGTCTTTTGAAAGTGAGGCCATCACAGATCTATCATTGGAGCCTCTTTTTACTGTGCTATATCAtaagatacaggggttggacaatgaaactgaaacacctgtcattttagtgtgggaggtttcatggcttaattggagcagc

Function

symbol description
mdfi Is expressed in several structures, including neural plate; paraxial mesoderm; pectoral fin; pectoral fin bud; and presumptive diencephalon. Orthologous to human MDFI (MyoD family inhibitor).

NR:

description
myoD family inhibitor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247753.3 True 2067 mRNA 0.52 5 26008796 26085478

Neighbor

gene id symbol gene type direction distance location
ppfia4 ppfia4 coding downstream 238077 25587726 ~ 25770719 (-)
LOC103039085 NA coding downstream 454109 25508488 ~ 25554687 (-)
LOC103038137 NA coding downstream 471793 25527642 ~ 25537003 (-)
lrrn2 lrrn2,LOC108425772,LOC107603068,LOC107739267,LOC107727852,LOC107675837,LOC107656005 coding downstream 654319 25235114 ~ 25354477 (-)
LOC103045744 NA coding downstream 1207895 24774039 ~ 24800901 (-)
LOC103035733 foxp4,LOC107739274,LOC107728618 coding upstream 28959 26114437 ~ 26349705 (-)
il10 NA coding upstream 1043674 27129152 ~ 27133856 (-)
LOC103047370 NA coding upstream 1062236 27147714 ~ 27153326 (-)
prelp prelp coding upstream 1077269 27162747 ~ 27170995 (-)
LOC103032351 LOC108435192 coding upstream 1111573 27197051 ~ 27210316 (-)
G192955 tfeb non-coding downstream 150380 25854665 ~ 25858416 (-)
G192956 NA non-coding downstream 151641 25856383 ~ 25857155 (-)
G192952 NA non-coding downstream 182840 25819208 ~ 25825956 (-)
G192951 NA non-coding downstream 189845 25809068 ~ 25818951 (-)
G192947 NA non-coding downstream 223341 25782382 ~ 25785455 (-)
G193005 NA non-coding upstream 142130 26227608 ~ 26297229 (-)
G193014 NA non-coding upstream 349030 26434508 ~ 26434782 (-)
G193017 NA non-coding upstream 407725 26493203 ~ 26493562 (-)
G193018 NA non-coding upstream 492254 26577732 ~ 26577984 (-)
G193020 NA non-coding upstream 533268 26618746 ~ 26618978 (-)
LOC111195415 tfeb other downstream 130143 25874910 ~ 25878653 (-)
G192815 mdm4 other downstream 791246 25211675 ~ 25217550 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other downstream 1902898 24039246 ~ 24105898 (-)
G192251 adipor1,LOC107749488,LOC107385668 other downstream 2949991 23054633 ~ 23058805 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other downstream 3205154 22786163 ~ 22803642 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other upstream 625775 26711253 ~ 26724106 (-)
G193097 NA other upstream 946185 27031663 ~ 27033089 (-)
LOC111195340 NA other upstream 1305316 27390794 ~ 27391571 (-)
LOC103046149 LOC102777140,LOC108436414,LOC102208887,LOC105027122,LOC108280970,LOC103144351,LOC107751002 other upstream 1339564 27425042 ~ 27701331 (-)
tmem167b tmem167b other upstream 1925513 28010991 ~ 28015612 (-)

Expression


Co-expression Network