prph (prph)


Basic Information

Item Value
gene id prph
gene name prph
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 14624822 ~ 14638350 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248304.3
GGAGATATAGTCAGCTCTAGGGTATAAAAACCCTGGTATGCCTAACTTGGATGTCCTGTTGCTCCAGCTCTGACCACTGCCTCCCTCCAAAACTCCAGTGAAAGGTAAAAAACCCAGACAAGGACAAGGAGAAGACGATAAACCCATTCGAGACGTCCAACCATGAGCCACTCCACCGTCCGCACCTCGTACCGTCGCACCTTTGGTGCCCCTGCATCCTACACAGCCTACTCCCCGCTTCCATCCCGCCTGCCCATGTCCGGAGGCCGCTACCTAAGCTCGGTACCTGCTTCCATGCCCACTCGCAACGTGGGCTACCGGGCACGCTCGGGCACCCCAGTCTCTGCCTCCCGCCTGTCCTACGACAAGGTGGACTTCTCCGTGGCCGATGCCATCAACCAGGAGTTCCTGACCACTCGCAGCAATGAGAAGCAGGAGTTGCAGGAGCTGAACGACCGCTTCGCCAGCTTCATCGAGAAGGTCCGCTACCTGGAGCAGCAGAACGCCGGCCTCCAGCTGGAGCTCAACCAGTACAAGGGCAAACAGCAGCAGGGGCACCCCAATCGAGCCAGTGAGATGTGCCAGCAGGAGATGAGGGAGCTGCGTAACCAGATGGAGCAGATCGGGAAGGAACGGGACCAGTTCCAGGTGGAACGGGACAACTTGGCCGAAGATCTGGCCTTGCTCAAGCAGAGGCTGGATGAGGAGGCGCAGAAAAGGCAGGATGCTGAAAACCAGCTGGTCCTGTTCCGAAAGGATGTGGACGATGCCACTCTGGCCCGTTTGGAGCTGGAGAGGAAGATTGAGTCACTGATGGATGAGATTGAGTTCTTAAAGAAGGTGCACGATGAGGAAATCCAGGATGTGCAGGTGAGCATTGAGACCACTCAGcagatgaagatggaggtggaGGCCACAGCTCGTCCTGACCTGACTGCAGCCCTTAGGGATATAAGGTCCCAGTATGAAAGCATTGCAACCAAGAACATGCAGGAATCTGAGGAGTGGTACAAGTCCAAGGTTTCTGACCTGACAGATTCTGCGAAGCGTAATGCTGATGCCATGAGACAGGCCAAGCAGGAGGCCAACGAGTTCAGGAGGCAGATCCAAAGCCTCAACTGTGATATCGACGCTCTCAAGAGCACGAACGAGGCTCTGGTGAGGCAGATAAGGGATATGGAAGACCAGTTTGGATTGGAGGCCGGGAACTACCAGGACAACATCACGCGCCTGGAAGAGGAGATCCGCCACCTGAAGGACGAAATGTCCCGTCACTTGAGGGAATACCAGGACCTGCTCAATGTCAAGATGGCTCTGGACATCGAGATTGCCACCTACAGGAAGTTACTAGAGGGAGAGGAGAGCAGAATCGTGGTTCCGATCATGACATCAATGGGAATGCGCAATGGAATTGACTTTGACCAGCCTGCTGATGTTAGACAAAGCAAGAAGGTTGTGATCAAAACCGTTGAGATCCGTGATGGAGAGGTGGTGAAGGAGtctaagaaagagaaagacgcCCCCCGTGATGCCAAGATCACCCGAGAGTCCGACCGGGATGATTAGAGCAGGACGTTTGCGGCCACTGGTTCCATGTTCCAAAACTGAGGAGTTGAGAACAAAAAAGGGAGGATAAAATAAAGATGACACAAACATTAAAGCTGCTTATGCCTATCTACTGTAACTCAatgctgacaaaaaaaaaacaggattgaaAAATTGAGAAATTGTTCAAATTATTTCTACACTTTCTTCGATACTGTGATCCTAAACGGGATAGCCGACACACTTCAGCGAATCTCACAACGCAATGGTGCTAACGTCCTAGTCTAATCAGCCTTAAATCGCTCACAGTACATCTGATACAGTCTACAGTTCAACCACTGTTCAATCTCTTTAAATGTAATCTAACATATTCACTCCAGCACACAGCAGTCAATACAGTTCACAGTTGGGACGTTTTAAGAAAAACAGCGAATTTACACCAAATAAAATCACGTCATCTTTTATACACCAACTGTGGCCTTTATTTACAGCAGAACTTTACTGTTACCACTGATATTTAACTCAACTACTATATGATTAGTGGACACTGAGCTGGTCACTTACAGCActtacaacccccccccccctccccccgcaCTCACTGTCTATACAGAAAAACTGCCAGCTCACTTTCCCCTATAGCTTTACTGCAGTAGCATTAGCCTAGCGCTTTTAGCCGTTTTGTGatgtttaaagtattaaagatTGTATAATGGAGGTGTTAAAGGTTCTGTCCTCAGTTGATGATCTTAGCTAGTCTAGATCACTGTGGTTTAGGATACTGAACTAATCTGAAAGAAGGCCTCAGTCATTTCAATCCACAGAACTTgaatgtgttttctgctgcaaCCTCGTGCAAAACCAAATAAAGTGATTAAGAACATAA
>XM_007248305.3
GCGGAGATATAGTCAGCTCTAGGGTATAAAAACCCTGGTATGCCTAACTTGGATGTCCTGTTGCTCCAGCTCTGACCACTGCCTCCCTCCAAAACTCCAGTGAAAGGTAAAAAACCCAGACAAGGACAAGGAGAAGACGATAAACCCATTCGAGACGTCCAACCATGAGCCACTCCACCGTCCGCACCTCGTACCGTCGCACCTTTGGTGCCCCTGCATCCTACACAGCCTACTCCCCGCTTCCATCCCGCCTGCCCATGTCCGGAGGCCGCTACCTAAGCTCGGTACCTGCTTCCATGCCCACTCGCAACGTGGGCTACCGGGCACGCTCGGGCACCCCAGTCTCTGCCTCCCGCCTGTCCTACGACAAGGTGGACTTCTCCGTGGCCGATGCCATCAACCAGGAGTTCCTGACCACTCGCAGCAATGAGAAGCAGGAGTTGCAGGAGCTGAACGACCGCTTCGCCAGCTTCATCGAGAAGGTCCGCTACCTGGAGCAGCAGAACGCCGGCCTCCAGCTGGAGCTCAACCAGTACAAGGGCAAACAGCAGCAGGGGCACCCCAATCGAGCCAGTGAGATGTGCCAGCAGGAGATGAGGGAGCTGCGTAACCAGATGGAGCAGATCGGGAAGGAACGGGACCAGTTCCAGGTGGAACGGGACAACTTGGCCGAAGATCTGGCCTTGCTCAAGCAGAGGCTGGATGAGGAGGCGCAGAAAAGGCAGGATGCTGAAAACCAGCTGGTCCTGTTCCGAAAGGATGTGGACGATGCCACTCTGGCCCGTTTGGAGCTGGAGAGGAAGATTGAGTCACTGATGGATGAGATTGAGTTCTTAAAGAAGGTGCACGATGAGGAAATCCAGGATGTGCAGGTGAGCATTGAGACCACTCAGcagatgaagatggaggtggaGGCCACAGCTCGTCCTGACCTGACTGCAGCCCTTAGGGATATAAGGTCCCAGTATGAAAGCATTGCAACCAAGAACATGCAGGAATCTGAGGAGTGGTACAAGTCCAAGGTTTCTGACCTGACAGATTCTGCGAAGCGTAATGCTGATGCCATGAGACAGGCCAAGCAGGAGGCCAACGAGTTCAGGAGGCAGATCCAAAGCCTCAACTGTGATATCGACGCTCTCAAGAGCACGAACGAGGCTCTGGTGAGGCAGATAAGGGATATGGAAGACCAGTTTGGATTGGAGGCCGGGAACTACCAGGACAACATCACGCGCCTGGAAGAGGAGATCCGCCACCTGAAGGACGAAATGTCCCGTCACTTGAGGGAATACCAGGACCTGCTCAATGTCAAGATGGCTCTGGACATCGAGATTGCCACCTACAGGAAGTTACTAGAGGGAGAGGAGAGCAGAATCGTGGTTCCGATCATGACATCAATGGGAATGCGCAATGTTGACTTTGACCAGCCTGCTGATGTTAGACAAAGCAAGAAGGTTGTGATCAAAACCGTTGAGATCCGTGATGGAGAGGTGGTGAAGGAGtctaagaaagagaaagacgcCCCCCGTGATGCCAAGATCACCCGAGAGTCCGACCGGGATGATTAGAGCAGGACGTTTGCGGCCACTGGTTCCATGTTCCAAAACTGAGGAGTTGAGAACAAAAAAGGGAGGATAAAATAAAGATGACACAAACATTAAAGCTGCTTATGCCTATCTACTGTAACTCAatgctgacaaaaaaaaaacaggattgaaAAATTGAGAAATTGTTCAAATTATTTCTACACTTTCTTCGATACTGTGATCCTAAACGGGATAGCCGACACACTTCAGCGAATCTCACAACGCAATGGTGCTAACGTCCTAGTCTAATCAGCCTTAAATCGCTCACAGTACATCTGATACAGTCTACAGTTCAACCACTGTTCAATCTCTTTAAATGTAATCTAACATATTCACTCCAGCACACAGCAGTCAATACAGTTCACAGTTGGGACGTTTTAAGAAAAACAGCGAATTTACACCAAATAAAATCACGTCATCTTTTATACACCAACTGTGGCCTTTATTTACAGCAGAACTTTACTGTTACCACTGATATTTAACTCAACTACTATATGATTAGTGGACACTGAGCTGGTCACTTACAGCActtacaacccccccccccctccccccgcaCTCACTGTCTATACAGAAAAACTGCCAGCTCACTTTCCCCTATAGCTTTACTGCAGTAGCATTAGCCTAGCGCTTTTAGCCGTTTTGTGatgtttaaagtattaaagatTGTATAATGGAGGTGTTAAAGGTTCTGTCCTCAGTTGATGATCTTAGCTAGTCTAGATCACTGTGGTTTAGGATACTGAACTAATCTGAAAGAAGGCCTCAGTCATTTCAATCCACAGAACTTgaatgtgttttctgctgcaaCCTCGTGCAAAACCAAATAAAGTGATTAAGAACATAA

Function

symbol description
prph Predicted to enable structural molecule activity. Acts upstream of or within tissue regeneration. Predicted to be located in type III intermediate filament. Is expressed in nervous system. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 1. Orthologous to human PRPH (peripherin).

NR:

description
plasticin-like

GO: NA

KEGG:

id description
K07607 PRPH; peripherin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248304.3 True 2431 mRNA 0.49 9 14624822 14638348
XM_007248305.3 False 2430 mRNA 0.49 9 14624822 14638350

Neighbor

gene id symbol gene type direction distance location
tamm41 tamm41 coding downstream 3410 14610951 ~ 14621412 (-)
vgll4 vgll4,LOC107697562,LOC107750033 coding downstream 15198 14549146 ~ 14609624 (-)
LOC111195442 NA coding downstream 369350 14251464 ~ 14255472 (-)
LOC103026383 NA coding downstream 1052211 13557022 ~ 13572611 (-)
gdf11 gdf11,LOC108431504,LOC107385665,LOC101480554,LOC103359380 coding downstream 1091200 13493576 ~ 13533622 (-)
LOC111195382 tuba1c,LOC108431527,LOC105935211,LOC102211704 coding upstream 9456 14647806 ~ 14654334 (-)
LOC103046666 Tuba1a,tuba1a,LOC108255233,LOC108275946,LOC106934846 coding upstream 17895 14656245 ~ 14659947 (-)
suox suox coding upstream 29657 14668007 ~ 14677478 (-)
mcrs1 mcrs1,LOC107696040 coding upstream 41577 14679927 ~ 14694115 (-)
dnajc14 dnajc14,LOC107562234 coding upstream 82035 14720385 ~ 14728314 (-)
G189808 NA non-coding downstream 28248 14594996 ~ 14596574 (-)
G189803 NA non-coding downstream 78177 14545906 ~ 14546645 (-)
G189789 NA non-coding downstream 201152 14420713 ~ 14423670 (-)
G189779 NA non-coding downstream 299525 14324804 ~ 14325297 (-)
G189778 NA non-coding downstream 313780 14310305 ~ 14311042 (-)
G189814 inpp1,LOC107683640,LOC107730897,LOC107562242,LOC107737355 non-coding upstream 69385 14707735 ~ 14709526 (-)
G189821 inpp1 non-coding upstream 74533 14712883 ~ 14713733 (-)
G189823 NA non-coding upstream 79086 14717436 ~ 14799628 (-)
G189834 NA non-coding upstream 121438 14759788 ~ 14760374 (-)
G189835 cnpy2,LOC103039390,LOC108431501,LOC107572063 non-coding upstream 142198 14780548 ~ 14782900 (-)
tsen2 NA other downstream 1548080 13062799 ~ 13076742 (-)
LOC111195455 NA other downstream 1910790 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other downstream 2005256 12614912 ~ 12619566 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 2229290 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 2446212 12160542 ~ 12178610 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 680293 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 770857 15409207 ~ 15466584 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 1707351 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 1931273 16569623 ~ 16599317 (-)
cass4 NA other upstream 2195500 16833850 ~ 16869461 (-)

Expression


Co-expression Network