LOC103038772


Basic Information

Item Value
gene id LOC103038772
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 14754376 ~ 14764355 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248309.2
aaaacaaaatcataattttttaagtggtctcattttttttctagagctttaTATTAAGTTGGTCATAATAGTGGACCAGCATGGTCAAGAGAAAGGTCATTAAGCTTAGGCATAATGCTTGGCTGTTTTGGGAAAGCTAGCTGATCAATTTGATCAAACTAGTTCTAATGGTGGACCAGCTTTGGCAGGTTTCATCATACTGGATGAGTTATGTCAAATCTGGTTGTCCAACTGGGTCAGGCTGGTCTTTACTGGTGGAGCAGAATAACTGTTAGGTATGTAAACCATCTTGGGTTCAATAGGTAATCTTGGTTACCAAGCTCAGCTATGCTGGATGGCTTACTTCATGTTGGTCAACATAATTGGTCATACTGattctacttttttatttggCCAAGTTCTACAGGTGGACCAGTATGGCCCAGTGTGAGCTTGTGGTCCTGATCAAACTGGTTGACGCAATCAGTAATGGTGATCCTACTGCTTGACTAAGTTCTTGGGCATGCTGGTAGACCAGAAAACcactcagacagacagatatttaGTGGTACCAGTTTGAACAGCTTGAGCAGTCAAGAAGAACGCGGTAATGTTACAGTATTGACACTTTGTTCCTTGTTTACTGGACTCTTCCTCCTGCAGGCTGATCTCGCTGGATGACTCTGGTTGGGAGGAGCAGTACAGAGCTGTTAAGGGTGAACAGTTTGAGTTAGGTGTAACAGTGAACAGCAGTGTAGAGGACAGTGAATCAGTGGTATAGGATGGAGGAAGCGTACACGGCCCTTTATCAGCAGTTTCTCCGCCTTCAGTCTCTCTGCCTGAAACAAGCCGCCATGCTTCAACACCTGACGGAGGCGTTGAGACGACAGCAAGGAAATCTGGAACCCCCCGGCACCAAAGAATTCTTCCTACCCCATCAAGGGTATAAAAGCTGCGTGACCCGCGTGCTGCCACACCCTAAGGAAACCAGTCTACCTCCTCTTTCTTATGGGGATTTTGAAGATTTGGTATCTATCCCGATCCAGTGCACAGAGGAAGAGGCGACCTTCACCTATCCAGGTGTTCCTGCACAAGCAGCTCAGATGCCAGCCCTCGCACCACACCCAGGTGATGCTAACCTCGCTCCCCTGACTGGGGCACTGCACCGACTACAGCTTGACCCCACGTGGGCGGAGCCAAAGCTGAACAACTGTGATCAAACAATGCCAGCGGCTTCTCCGGCACCTCAAGCCAGCATAGTGAAAAATTTACAGCAGGTTGAGCAGCGCTGGCACAGCCTCCAAACATCTAAACCCACGCGGAGGCCGTGGTCCTCCTCCTTCATGAACAGTGAGATGCTGAGCCAGGCCGGGGGGCTGCTGATGTCGGGGGTCATGGTGTCGTCCCAGGTGTGTGAATTCTGCCATGCTGTGTTTCCCGGACACACCACCACCAACGGGGAGTTTCTGCGCCATCTTATGTCACACACCTGAGACACCACACCTGAGACACCACACCAGATACATCCCTATAGAGACATAACACTGGagacaaacacctgaaacaTCACCCCAGAGATATCACATATGGAAAAATCACCAGAGACATCATACGGGAGACATCTGTTACCTGTTCTTAAATACAGAATGAGACACATTCA
>XM_022682439.1
ttttccgTCCTGAAGTGTTAATGGTACATTTATCTGGTCCGGAAACCCAGTTGGACCCGTGTTTGAGTTGTTTGAGTACATTTATATAAAGGCTGATCTCGCTGGATGACTCTGGTTGGGAGGAGCAGTACAGAGCTGTTAAGGGTGAACAGTTTGAGTTAGGTGTAACAGTGAACAGCAGTGTAGAGGACAGTGAATCAGTGGTATAGGATGGAGGAAGCGTACACGGCCCTTTATCAGCAGTTTCTCCGCCTTCAGTCTCTCTGCCTGAAACAAGCCGCCATGCTTCAACACCTGACGGAGGCGTTGAGACGACAGCAAGGAAATCTGGAACCCCCCGGCACCAAAGAATTCTTCCTACCCCATCAAGGGTATAAAAGCTGCGTGACCCGCGTGCTGCCACACCCTAAGGAAACCAGTCTACCTCCTCTTTCTTATGGGGATTTTGAAGATTTGGTATCTATCCCGATCCAGTGCACAGAGGAAGAGGCGACCTTCACCTATCCAGGTGTTCCTGCACAAGCAGCTCAGATGCCAGCCCTCGCACCACACCCAGGTGATGCTAACCTCGCTCCCCTGACTGGGGCACTGCACCGACTACAGCTTGACCCCACGTGGGCGGAGCCAAAGCTGAACAACTGTGATCAAACAATGCCAGCGGCTTCTCCGGCACCTCAAGCCAGCATAGTGAAAAATTTACAGCAGGTTGAGCAGCGCTGGCACAGCCTCCAAACATCTAAACCCACGCGGAGGCCGTGGTCCTCCTCCTTCATGAACAGTGAGATGCTGAGCCAGGCCGGGGGGCTGCTGATGTCGGGGGTCATGGTGTCGTCCCAGGTGTGTGAATTCTGCCATGCTGTGTTTCCCGGACACACCACCACCAACGGGGAGTTTCTGCGCCATCTTATGTCACACACCTGAGACACCACACCTGAGACACCACACCAGATACATCCCTATAGAGACATAACACTGGagacaaacacctgaaacaTCACCCCAGAGATATCACATATGGAAAAATCACCAGAGACATCATACGGGAGACATCTGTTACCTGTTCTTAAATACAGAATGAGACACATTCA
>XM_022682440.1
CGTGACCCAGCAGGTTCTGCTCTGTGAGAAATTTTCAGTTCCTGCTTTCAGTTTGTGGATTCAGGCAGGAACAGCCTGTTAAAGTCGTGTTTTAAGAGCAGTATAAACACTTTTTCCGTCCTGAAGTGTTAATGGTACATTTATCTGGTCCGGAAACCCAGTTGGACCCGTGTTTGAGTTGTTTGAGTACATTTATATAAAGGCTGATCTCGCTGGATGACTCTGGTTGGGAGGAGCAGTACAGAGCTGTTAAGGGTGAACAGTTTGAGTTAGGTGTAACAGTGAACAGCAGTGTAGAGGACAGTGAATCAGTGGTATAGGATGGAGGAAGCGTACACGGCCCTTTATCAGCAGTTTCTCCGCCTTCAGTCTCTCTGCCTGAAACAAGCCGCCATGCTTCAACACCTGACGGAGGCGTTGAGACGACAGCAAGGAAATCTGGAACCCCCCGGCACCAAAGAATTCTTCCTACCCCATCAAGGGTATAAAAGCTGCGTGACCCGCGTGCTGCCACACCCTAAGGAAACCAGTCTACCTCCTCTTTCTTATGGGGATTTTGAAGATTTGGTATCTATCCCGATCCAGTGCACAGAGGAAGAGGCGACCTTCACCTATCCAGGTGTTCCTGCACAAGCAGCTCAGATGCCAGCCCTCGCACCACACCCAGGTGATGCTAACCTCGCTCCCCTGACTGGGGCACTGCACCGACTACAGCTTGACCCCACGTGGGCGGAGCCAAAGCTGAACAACTGTGATCAAACAATGCCAGCGGCTTCTCCGGCACCTCAAGCCAGCATAGTGAAAAATTTACAGCAGGTTGAGCAGCGCTGGCACAGCCTCCAAACATCTAAACCCACGCGGAGGCCGTGGTCCTCCTCCTTCATGAACAGTGAGATGCTGAGCCAGGCCGGGGGGCTGCTGATGTCGGGGGTCATGGTGTCGTCCCAGGTGTGTGAATTCTGCCATGCTGTGTTTCCCGGACACACCACCACCAACGGGGAGTTTCTGCGCCATCTTATGTCACACACCTGAGACACCACACCTGAGACACCACACCAGATACATCCCTATAGAGACATAACACTGGagacaaacacctgaaacaTCACCCCAGAGATATCACATATGGAAAAATCACCAGAGACATCATACGGGAGACATCTGTTACCTGTTCTTAAATACAGAATGAGACACATTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248309.2 True 1639 mRNA 0.48 5 14754376 14761942
XM_022682439.1 False 1088 mRNA 0.52 6 14754376 14763654
XM_022682440.1 False 1199 mRNA 0.51 6 14754376 14764355

Neighbor

gene id symbol gene type direction distance location
dnajc14 dnajc14,LOC107562234 coding downstream 26062 14720385 ~ 14728314 (-)
mcrs1 mcrs1,LOC107696040 coding downstream 60261 14679927 ~ 14694115 (-)
suox suox coding downstream 76898 14668007 ~ 14677478 (-)
LOC103046666 Tuba1a,tuba1a,LOC108255233,LOC108275946,LOC106934846 coding downstream 94429 14656245 ~ 14659947 (-)
LOC111195382 tuba1c,LOC108431527,LOC105935211,LOC102211704 coding downstream 100042 14647806 ~ 14654334 (-)
LOC103039087 NA coding upstream 2958 14767313 ~ 14778341 (-)
LOC103039903 LOC103039903,LOC108431517,LOC108255002,LOC107697969,LOC107598614,LOC107715030,LOC107671896,LOC102210977 coding upstream 21967 14786322 ~ 14795751 (-)
LOC103040538 si:ch73-190f16.2,nabp2,LOC108424604,LOC107557546,LOC108255000,LOC107572067 coding upstream 82767 14847122 ~ 14856386 (-)
LOC111195383 LOC108424608 coding upstream 189782 14954137 ~ 14955419 (-)
LOC103047892 LOC108424570 coding upstream 209223 14973578 ~ 14984895 (-)
G189821 inpp1 non-coding downstream 40643 14712883 ~ 14713733 (-)
G189814 inpp1,LOC107683640,LOC107730897,LOC107562242,LOC107737355 non-coding downstream 44850 14707735 ~ 14709526 (-)
G189808 NA non-coding downstream 157802 14594996 ~ 14596574 (-)
G189803 NA non-coding downstream 207731 14545906 ~ 14546645 (-)
G189789 NA non-coding downstream 330706 14420713 ~ 14423670 (-)
G189835 cnpy2,LOC103039390,LOC108431501,LOC107572063 non-coding upstream 16193 14780548 ~ 14782900 (-)
G189837 ankrd52,LOC105017093,LOC106565408,LOC106583345 non-coding upstream 33238 14797593 ~ 14805872 (-)
G189841 NA non-coding upstream 48643 14812998 ~ 14815031 (-)
G189845 ankrd52 non-coding upstream 61480 14825835 ~ 14830306 (-)
G189846 NA non-coding upstream 78221 14842576 ~ 14844243 (-)
tsen2 NA other downstream 1677634 13062799 ~ 13076742 (-)
LOC111195455 NA other downstream 2040344 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other downstream 2134810 12614912 ~ 12619566 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 2358844 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 2575766 12160542 ~ 12178610 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 554288 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 644852 15409207 ~ 15466584 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 1581346 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 1805268 16569623 ~ 16599317 (-)
cass4 NA other upstream 2069495 16833850 ~ 16869461 (-)

Expression


Co-expression Network