tp53rk (tp53rk)


Basic Information

Item Value
gene id tp53rk
gene name tp53rk
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15056169 ~ 15061088 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248319.3
ACATCCCACCGAAAGAAAGTCAAACACCGCtgtaggacttttattttgaaactaACAGGAGTTGGTTCTCGGATGGAGCAGAAGCATGGCGGGTATGGATGGTGGTAGTGGCGGCGCTGTCGCTCCGCCGAGTTTACCCGGAGCTCAGCTGCTGAAACAGGGCGCGGAGGCCCGGGTTTACCGCGGCCGGTTCTTGGGGAAGTCCACCATCGTTAAGGAGCGGTTTCCGAAGCGGTACCGACACCCGGTCCTGGATGAGAAGCTGACAAAGCGCAGAACCGCACAGGAGGTCCGGTCCATACTGCGCTGCAGGAAAGCGGGTATCAGTGCTCCAGTGGTATATTTCGTTGACTACACCACTAACTGCATCTTCCTGGAGGAAATCACGGACTCCATCACCATCAGGGAGCACATCACCTCCACTCAAGCATCTGGACGAAGCACAGAGACGCTGTACGGCCTGGCCGACCGCATCGGACAGATCCTGGCCAAGATGCACGATGAGGACGTCGTCCACGGAGACCTCACCACCTCCAACATGCTGCTGGTGGGTGAAGAAGACGGAAAACCAGGCAAACTGGTTCTAATAGACTTTGGCTTGAGCTACATCTCTGCCCTGCCTGAGGATAAAGGGGTGGACATGTACGTCCTGGAGAAGGCGTTCCTCAGCACCCACCCAAACACAGAGGCTCTGTTCCAGAGACTTCTGAAGAGCTACATCGCTGCATCCAAAAAAGCTCCAGCTGTCATTAAAAAACTGGACGAAGTCAGACTGAGAGGACGAAAGAGGTCTATGGTTGGATAAGTTGGAAAAGTCTGTAATACCCCATCTTAATTTGAATTATCATGGAAGATGATACCATACTTGGGCTGCACAATATCGATgaaaaatcaatataaaatataaaaccaaatattttatttttctgcaatatatattgtgaaattTGAAATAACTGGAATTGTCAGTGATCCAACATACTGTACAGTTATTATTGGagtgaaaaaaattatattgagCATGTAATCTGCCtttggtagattttttttttgtcataaaatgtaaatattggtAACGATTTACAATAAGCTTCACAATTAACAGttctaataaataatacagaacTCACTAACAAAGCTGAAATCACATTGTGCAGCCGTACACCACACCACATCTTTTACTGGTTTCTACTTCCATACCAATGTGCCTCTCTGGTTATTACTGATATCACAATAAAGTtgctttaagttgtaaataaaagtttttttaaacaaaa

Function

symbol description
tp53rk Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in protein phosphorylation and tRNA threonylcarbamoyladenosine metabolic process. Predicted to act upstream of or within phosphorylation and tRNA processing. Predicted to be part of EKC/KEOPS complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in Galloway-Mowat syndrome 4. Orthologous to human TP53RK (TP53 regulating kinase).

NR:

description
PREDICTED: TP53-regulating kinase

GO: NA

KEGG:

id description
K08851 TP53RK, PRPK, BUD32; TP53 regulating kinase and related kinases

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248319.3 True 1277 mRNA 0.45 2 15056169 15061088

Neighbor

gene id symbol gene type direction distance location
LOC103021615 NA coding downstream 1992 15041675 ~ 15054177 (-)
fndc11 NA coding downstream 23108 15032273 ~ 15033061 (-)
LOC103047892 LOC108424570 coding downstream 71274 14973578 ~ 14984895 (-)
LOC111195383 LOC108424608 coding downstream 100750 14954137 ~ 14955419 (-)
LOC103040538 si:ch73-190f16.2,nabp2,LOC108424604,LOC107557546,LOC108255000,LOC107572067 coding downstream 199783 14847122 ~ 14856386 (-)
LOC103042686 LOC103042686,LOC108424612,LOC108255211,LOC105895941,LOC104930306 coding upstream 12533 15073621 ~ 15087689 (-)
LOC103044311 ube2v1,LOC107572061,LOC105022328,LOC106572481,LOC107683645,LOC103044311,LOC108425074 coding upstream 29137 15090225 ~ 15096142 (-)
LOC103042998 ptk6,LOC108255075,LOC103372356 coding upstream 39387 15100475 ~ 15130469 (-)
LOC107197607 ptk6,LOC108231632 coding upstream 73687 15134775 ~ 15162761 (-)
LOC111195446 kaznb,LOC108424680,LOC107749453,LOC107685722,LOC105028825 coding upstream 175894 15236982 ~ 15282579 (-)
G189951 NA non-coding downstream 14927 15039981 ~ 15041242 (-)
G189867 LOC108424607 non-coding downstream 142104 14906176 ~ 14914065 (-)
G189852 NA non-coding downstream 188430 14866421 ~ 14867739 (-)
G189846 NA non-coding downstream 211926 14842576 ~ 14844243 (-)
G189845 ankrd52 non-coding downstream 225863 14825835 ~ 14830306 (-)
G189956 NA non-coding upstream 40640 15101728 ~ 15135426 (-)
G189987 NA non-coding upstream 137338 15198426 ~ 15202766 (-)
G190001 NA non-coding upstream 148529 15209617 ~ 15284715 (-)
G190004 NA non-coding upstream 154550 15215638 ~ 15217350 (-)
G190171 NA non-coding upstream 292349 15353437 ~ 15354632 (-)
tsen2 NA other downstream 1979427 13062799 ~ 13076742 (-)
LOC111195455 NA other downstream 2342137 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other downstream 2436603 12614912 ~ 12619566 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 2660637 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 2877559 12160542 ~ 12178610 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 257555 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 348119 15409207 ~ 15466584 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 1284613 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 1508535 16569623 ~ 16599317 (-)
cass4 NA other upstream 1772762 16833850 ~ 16869461 (-)

Expression


Co-expression Network