LOC103027815 (LOC108424594,LOC106566152)


Basic Information

Item Value
gene id LOC103027815
gene name LOC108424594,LOC106566152
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 21412689 ~ 21428618 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248359.3
TAGAGTCTCTGTTTTACCGCATAGAGccgaaaagagagagagaggagtcgAGCTGAGGACGAGCGAGAAGACCAGCCTATAGAGGGTCTCTGAGGGTCTCTGTCTTTGATGTCTGAACGAACATACAGAAGAGATAACGAAGACTCTGACTGCATGATCTTCGTCCTACATCACCTCCATCATCTTCctcactatttctctcttttcagcCTCCTTGgtttgtcctctctctctctctctctctctctttctttctctctctaatcaGCTTCTATAACAGTCTCACGTTCTCTCAACACCATGGAGACTGGGAGCCCACGCAAGATCCAGTTCACGGTCCCGTTGCTGGActctcacctggaccctgaagcTGCTGAACAGATCAGGAGAAGGCGGCCAACTCCAGCAACACTGGTAGCATCCAGTGACCAGTCCTCTCCAGAAATAGATGAAGACCGTCTTTCCAATCACCTCTACAAGCAAGCTCTGCTGAATTCACCCCGACAGAGACGGAAAGGAGCCAAAGGAACGCCAACCATGAAAGAGCTGCAGTTCATGGTGGAGCATCACCTGTGCCGGCAGCAGCAGGGCGCGGCGGACGAGTCGTCAGAGAGCTGTTTATCGGAGAGGACGAGTCCGGACGCCGGGCCCGGGGGGGAGGAGCTGCCGGTGGATGAGGTGGGCTGGAGTATAGCGGAGAAGGAGACGGTGGAGGCCCTGGAGAAACTGCGCTGCCAGGTGGAGAGTTTATCAGAGGCAGCAGGAGGAACAGAATCAGAACCGCCTCTTACCAGGGAACTGCCCGGTTCTGCTGCAGCCGGACCGGCAACATCCAAACCACCAACACCAGCAGcagcagcagcagcagcagcagcaggtcgcTCCTCTGGGGATGCAGCAGAGCCGGATGGGTCCCGGCGGATCCGCAGTGAGCGACAGTAGAAACACAGTGATGATGAGGAGGTGGATCAGATAAACAGAACAGAACCCTGGGGACGGGTTCACGGCCCGGACACTGGTGGATCCACACTGTAGACAATCTGAGgacttttattctctaaatcagcaaaatgtttaaattccTAACAAAATTAACTCACACTCCCAAATTTACTCAATTATTTTCATAACATTCAGATTCTGACTAAACTAAATCCCAGCCTTCAAGCTGAAACTCACATCTTCTGTAAAGTTCTGTAAAGTTCTATTAATGTTCTATAATGTTCACGTCCCGACTGAAGGACAGGTTTGTGGTTCTGAGCCTCACCCGGACCAGCAGTGGGCGTGTCCTTCACTATTCCGAATTCAGGGAATTCAGCGTTTTTCCACGTCCGAttcctgttttcctgttttatcTGATTCTTCTTTGCTTGTTTCAtagttttatgtaatttatgacCCACATGTTCAGTGTTCTACAACAGTTTCAGTTTTAAACTAAAGCCACTGTAGTCCTGAATCCCGCTGCTGGAGTGGGAGGAGTTTTTATGTAATTTCCTGACCTGCAGCACAAACCCTCACTGAAACCAAGATCCCAAATTAATACCAAGAAATTTATACCATGATCAATTTCTATGACTAATGAAAGATTTTACAGCAATGGATAATGGAACAATAGTATGATAGTATAGAGTAATAGAATAATGAAGCAATTGaagtatgaaaaaaattaataaagggaCACCAGAATAACTGTATATTGATACTAAAATAATAGTATACTGAAATAATAGAAgtaataaaacagttaaataaTGGAATACTATAGTAATGAAATGAAAGAGTAATGTCATAATGGAGTAAAGAAACATTGCATTAATTGTAATAATGGAGTAATGGAAAATTggcataattaattattatgaattttaccatagttagttccgaccctgcaatgtgattggctgacaggCATTCTATgggtgacattatcagccggtaatgcaccaTAACCGAAGCTCTTTATGTATTACTTTGCCACATACAGGCAACCTATGGAGTAGGATATacagctccaaaaaaaaaaaataa
>XM_007248360.3
TAGAGTCTCTGTTTTACCGCATAGAGccgaaaagagagagagaggagtcgAGCTGAGGACGAGCGAGAAGACCAGCCTATAGAGGGTCTCTGAGGGTCTCTGTCTTTGATGTCTGAACGAACATACAGAAGAGATAACGAAGACTCTGACTGCATGATCTTCGTCCTACATCACCTCCATCATCTTCctcactatttctctcttttcagcCTCCTTGgtttgtcctctctctctctctctctctctctttctttctctctctaatcaGCTTCTATAACAGTCTCACGTTCTCTCAACACCATGGAGACTGGGAGCCCACGCAAGATCCAGTTCACGGTCCCGTTGCTGGActctcacctggaccctgaagcTGCTGAACAGATCAGGAGAAGGCGGCCAACTCCAGCAACACTGGTAGCATCCAGTGACCAGTCCTCTCCAGAAATAGATGAAGACCGTCTTTCCAATCACCTCTACAAGCAAGCTCTGCTGAATTCACCCCGACAGAGACGGAAAGGAGCCAAAGGAACGCCAACCATGAAAGAGCTGCAGTTCATGGTGGAGCATCACCTGTGCCGGCAGCAGCAGGGCGCGGCGGACGAGTCGTCAGAGAGCTGTTTATCGGAGAGGACGAGTCCGGACGCCGGGCCCGGGGGGGAGGAGCTGCCGGTGGATGAGGTGGGCTGGAGTATAGCGGAGAAGGAGACGGTGGAGGCCCTGGAGAAACTGCGCTGCCAGGTGGAGAGTTTATCAGAGGCAGCAGGAGGAACAGAATCAGAACCGCCTCTTACCAGGGAACTGCCCGGTTCTGCTGCAGCCGGACCGGCAACATCCAAACCACCAACACCAGCAGcagcagcagcagcagcagcaggtcgcTCCTCTGGGGATGCAGCAGAGCCGGATGGGTCCCGGCGGATCCGCAGTGAGCGACAGTAGAAACACAGTGATGATGAGGAGGTGGATCAGATAAACAGAACAGAACCCTGGGGACGGGTTCACGGCCCGGACACTGGTGGATCCACACTGTAGACAATCTGAGgacttttattctctaaatcagcaaaatgtttaaattccTAACAAAATTAACTCACACTCCCAAATTTACTCAATTATTTTCATAACATTCAGATTCTGACTAAACTAAATCCCAGCCTTCAAGCTGAAACTCACATCTTCTGTAAAGTTCTGTAAAGTTCTATTAATGTTCTATAATGTTCACGTCCCGACTGAAGGACAGGTTTGTGGTTCTGAGCCTCACCCGGACCAGCAGTGGGCGTGTCCTTCACTATTCCGAATTCAGGGAATTCAGCGTTTTTCCACGTCCGAttcctgttttcctgttttatcTGATTCTTCTTTGCTTGTTTCAtagttttatgtaatttatgacCCACATGTTCAGTGTTCTACAACAGTTTCAGTTTTAAACTAAAGCCACTGTAGTCCTGAATCCCGCTGCTGGAGTGGGAGGAGTTTTTATGTAATTTCCTGACCTGCAGCACAAACCCTCACTGAAACCAAGATCCCAAATTAATACCAAGAAATTTATACCATGATCAATTTCTATGACTAATGAAAGATTTTACAGCAATGGATAATGGAACAATAGTATGATAGTATAGAGTAATAGAATAATGAAGCAATTGaagtatgaaaaaaattaataaagggaCACCAGAATAACTGTATATTGATACTAAAATAATAGTATACTGAAATAATAGAAgtaataaaacagttaaataaTGGAATACTATAGTAATGAAATGAAAGAGTAATGTCATAATGGAGTAAAGAAACATTGCATTAATTGTAATAATGGAGTAATGGAAAATTggcataattaattattatgaattttaccatagttagttccgaccctgcaatgtgattggctgacaggCATTCTATgggtgacattatcagccggtaatgcaccaTAACCGAAGCTCTTTATGTATTACTTTGCCACATACAGGCAACCTATGGAGTAGGATATacagctccaaaaaaaaaaaataa

Function

NR:

description
PREDICTED: protein phosphatase 1 regulatory subunit 1A-like isoform X2

GO: NA

KEGG:

id description
K08050 PPP1R1A; protein phosphatase 1 regulatory subunit 1A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248359.3 True 2031 mRNA 0.45 6 21412689 21428618
XM_007248360.3 False 2028 mRNA 0.45 6 21412689 21428618

Neighbor

gene id symbol gene type direction distance location
LOC103026802 NA coding downstream 64305 21342702 ~ 21348384 (-)
gpx1 gpx1a,LOC103031640,LOC108435306,LOC108255192,LOC107577558,LOC107718196,LOC103360354 coding downstream 297766 21112480 ~ 21114923 (-)
LOC103031955 NA coding downstream 315449 21093650 ~ 21097240 (-)
itpr1 itpr1 coding downstream 340271 20837118 ~ 21072418 (-)
bhlhe40 bhlhe40 coding downstream 591165 20816597 ~ 20821524 (-)
itga7 itga7 coding upstream 13670 21442288 ~ 21498063 (-)
LOC111195406 NA coding upstream 79434 21508052 ~ 21508261 (-)
arfgap1 arfgap1 coding upstream 122137 21550755 ~ 21570651 (-)
LOC111195407 NA coding upstream 143749 21572367 ~ 21583063 (-)
LOC103033505 agap2 coding upstream 169509 21598127 ~ 21630334 (-)
G191791 NA non-coding downstream 41910 21303518 ~ 21370779 (-)
G191787 NA non-coding downstream 132937 21279003 ~ 21279752 (-)
G191691 NA non-coding downstream 173167 21173472 ~ 21239522 (-)
G191664 NA non-coding downstream 305867 21105440 ~ 21106822 (-)
G191653 NA non-coding downstream 320454 21091820 ~ 21092235 (-)
G191812 NA non-coding upstream 97541 21526159 ~ 21528036 (-)
G191827 NA non-coding upstream 281298 21709916 ~ 21711285 (-)
G191858 NA non-coding upstream 404524 21833142 ~ 21833495 (-)
G191870 NA non-coding upstream 431508 21860126 ~ 21924848 (-)
G191880 NA non-coding upstream 529223 21957841 ~ 21958432 (-)
brk1 brk1,BRK1,LOC106565571 other downstream 309471 21099347 ~ 21103218 (-)
LOC103036492 card19,LOC108443695 other downstream 1884109 19511321 ~ 19528580 (-)
LOC103032794 tusc2,tusc2b,LOC107593101,LOC107587002,LOC107695626 other downstream 2510404 18897509 ~ 18902285 (-)
LOC111195399 wu:fd14a01,myhz1.2,LOC108444093,LOC108443910,LOC108444092,LOC108416711,LOC108416675,LOC108416954,LOC108443907,LOC108254798,LOC108261508,LOC107737926,LOC107575389,LOC108416101,LOC107681327,LOC108261437,LOC108254800,LOC106570860,LOC102780693,LOC101068441,LOC108417180,LOC101164155,LOC105899468,LOC107378336,LOC107378334,LOC101071797,LOC105890352,LOC107372732,LOC107093413,LOC108254796 other downstream 2613774 18708319 ~ 18798915 (-)
LOC103041510 LOC108414096 other downstream 3097352 18311452 ~ 18315337 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other upstream 1398 21430016 ~ 21436453 (-)
elmo2 elmo2,LOC106583331 other upstream 82306 21510924 ~ 21544831 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other upstream 418351 21846969 ~ 21851642 (-)
alas1 alas1,LOC106583798 other upstream 920729 22349347 ~ 22362458 (-)
amhr2 NA other upstream 1280931 22709549 ~ 22722905 (-)

Expression


Co-expression Network