LOC103040941 (ndrg3,LOC108412994,LOC107655061,LOC107727846,LOC107749481,LOC107562126)


Basic Information

Item Value
gene id LOC103040941
gene name ndrg3,LOC108412994,LOC107655061,LOC107727846,LOC107749481,LOC107562126
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 22739733 ~ 22782472 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248404.3
CCATAAAGAGTGACATCAcgacccagagagagagagagagagacacaggagAACCCTCCTAACAGAACCCAGAACCAGCACCGCACGAGCAGCGCGAGCCCCACAACACCGCCCGGCCCACCGCACGAGCTCCTGCAGTACAGAGCGAGACGGACGCTGACATGGAGGAGCTACAGGACGTTCAGCTGACAGAAATCAGGCCCCTGCTGACCAACAAGaaTTCTCGGAACTTCCAGGACTTTGATTGTCAGGAATATGACCTTGAGACTCCGCAAGGTGTCCTACACGTGACCATGAGGGGCATTCCCAAAGGAAACCGCCCTGTGATCCTGACCTACCATGACATCGGCCTGAACCATAAATCGTGCTTCAACACACTGTTTAACTTTGAGGACATGAAGGAGATCACACAGCACTTTGCCGTGGTGCACATCGATGCCCCCGGCCAGCAGGAGGGAGCACCCCCCTTCCCCACTGGGTACCAGTATCCCAGTATGGATGAGCTGGCAGAGATGCTGCCCTCAGTCATGACTCAGCTGAAGGTGAACAGTGTGATCGGAATTGGCGTAGGTGCAGGAGCATACATCCTCTCCCGATTTGCACTCAACCACCCGTCGCTAGTGGAGGGTCTGGTGCTGATCAATGTGAACCCGTGCGCTGAGGGCTGGATCGACTGGGCTGCTTCTAAGCTCTCTGGATGGACCAGCACCCTGGTGGACATTGTGATGGCTCATCACTTCAGCACTGAGGAGCTAACAGACAACCAGGAACTGATCCAGACGTACCGCCTCCACATCGCCCAGGACATCAACCAGGAGAACCTTACCCTCTTCTGTGACTCTTACAATGCGCGCCGGGACCTGGGAATTGAGAGGCCTGTTGTTGGTCTGAATGAAGATATCAACAACACGCTGGTCTGCCCGGCTCTGCTGGTGGTGGGAGACACATCTCCTGCTGTGGAAGCTGTGGTGGAATGCAACTGCAGGCTAAATCCGACAAAAACGACACTCCTGAAGATGGCCGACTGTGGCGGCTTGCCTCAGGTTGTGCAGCCCGGTAAACTGGCCGAGGCCTTCAAGTATTTTGTTCAGGGGATGGGATACATCCCGTATGTTCTGCTCAGCCACCTGAGCAGTGAATCAGtaccaGCTGCCGGCATGACCCGCCTCGCCCGCTCCcgcaccacctcctcctccagcatCGCCTCTATGGACAGCACCCGCCTGCGCAACCTCAACAGCCCAATGGACGGCCTCAACACCGCAGCCCTGGACAACCAGGCCCAGCCACAGACCATGGAGGTGTCCTGCTAGACCAGCCCCCTCCTCTCTCAGGGGGTACAGTCTGCTGTTCCTACATGCTAACTCCTCCCCTGAACCGATCGATCACCTGATCAGGTTTGCTAAAGCAAGCAGAGGCGGTAAAGATTAGtggtgcacacaaacacacacaaacacagagagagagagagagtatatgattatatatatatatagactatatatatatatatatatatatatattatatatatatatatatatatatataaacccatCACATCTTCAATCACAAAACAATAAGAAATATCTGCAGTATGAGCGTATCTGAATTCTGGGCACAGTCACTGGGTGGTATGTGGTTTATGACATTGGGCCAGTTGGACGAGCTGAATGATGACTTTCACTTTAAACTCATCAGTTCTGATTTTTTAGGTATTAACATCTTTAAACTCGGAACAGCGGAGTtagaattaagtaaaaaaaataaaacacaacaacagTTGTTCTGAATAACCCCCTCAGTCCAGACATCCAGCCGCTGCACACATGTAGCataaatgaatgtttttgtaataataataataataataataatcttttatCAGTTCTCTGTAATGTTCCTGTGTTAGTCACCAGTTCTCGAGTAACCTGCAGAACTCTTGCTATGAATGAAGTTCAGTAGAAttatgctgctgctgatgaatcaacTGGGCTCTTCTGAAATAAACACATTCCAGATGTTCTAAAAAggtgtttaacatgttttatcaCTATAGTCTCCTAGAGAAAGCCCAGTTTCTAGCCCAGCTAATAGACTGACTCTGTACGGGAGAATATGCAGGTATTATAATTTAAGAGTTTGGGAGCAATAATTGTTTCTCATGCCGTCGTATAGGAATTGTTTCACCTGAAAGTTATAAAACTGTAacagattttaaatgttaatatcCTTTATTACTCATCTCGTTTTACccttaaatgtttgtttgtttttttaaacagttctcACAACAGTACTTGAATAATGTATACAAAACTGCACTTCTCATCCCTTCATAACCGTGGAACCATCTCTGATATAACGATGTCAACCGataatattcattaaaaacaaaatacctTCTAGTGAATAAAGCTGGAATATCTCTCATGA
>XM_007248405.3
tcttctGCTTCCTTTCTCATAcccattctctctccctccaaacacactctctccgtttctctctctttctttctctctccatcctgtCTGTTTTCCTCTGCTGTGCCTCGCCCCTCTCGCGCTCTGTctctgcgcctctctctctgctgGTTCTTCATCAGTGTCCCTGACTCTTCATCTCCTGTGGAAAGATGTCAACTGTTCTGGATGTGGAGCAGAATGCATGCACTGGGGATgcagtgGAATATGACCTTGAGACTCCGCAAGGTGTCCTACACGTGACCATGAGGGGCATTCCCAAAGGAAACCGCCCTGTGATCCTGACCTACCATGACATCGGCCTGAACCATAAATCGTGCTTCAACACACTGTTTAACTTTGAGGACATGAAGGAGATCACACAGCACTTTGCCGTGGTGCACATCGATGCCCCCGGCCAGCAGGAGGGAGCACCCCCCTTCCCCACTGGGTACCAGTATCCCAGTATGGATGAGCTGGCAGAGATGCTGCCCTCAGTCATGACTCAGCTGAAGGTGAACAGTGTGATCGGAATTGGCGTAGGTGCAGGAGCATACATCCTCTCCCGATTTGCACTCAACCACCCGTCGCTAGTGGAGGGTCTGGTGCTGATCAATGTGAACCCGTGCGCTGAGGGCTGGATCGACTGGGCTGCTTCTAAGCTCTCTGGATGGACCAGCACCCTGGTGGACATTGTGATGGCTCATCACTTCAGCACTGAGGAGCTAACAGACAACCAGGAACTGATCCAGACGTACCGCCTCCACATCGCCCAGGACATCAACCAGGAGAACCTTACCCTCTTCTGTGACTCTTACAATGCGCGCCGGGACCTGGGAATTGAGAGGCCTGTTGTTGGTCTGAATGAAGATATCAACAACACGCTGGTCTGCCCGGCTCTGCTGGTGGTGGGAGACACATCTCCTGCTGTGGAAGCTGTGGTGGAATGCAACTGCAGGCTAAATCCGACAAAAACGACACTCCTGAAGATGGCCGACTGTGGCGGCTTGCCTCAGGTTGTGCAGCCCGGTAAACTGGCCGAGGCCTTCAAGTATTTTGTTCAGGGGATGGGATACATCCCGTATGTTCTGCTCAGCCACCTGAGCAGTGAATCAGtaccaGCTGCCGGCATGACCCGCCTCGCCCGCTCCcgcaccacctcctcctccagcatCGCCTCTATGGACAGCACCCGCCTGCGCAACCTCAACAGCCCAATGGACGGCCTCAACACCGCAGCCCTGGACAACCAGGCCCAGCCACAGACCATGGAGGTGTCCTGCTAGACCAGCCCCCTCCTCTCTCAGGGGGTACAGTCTGCTGTTCCTACATGCTAACTCCTCCCCTGAACCGATCGATCACCTGATCAGGTTTGCTAAAGCAAGCAGAGGCGGTAAAGATTAGtggtgcacacaaacacacacaaacacagagagagagagagagtatatgattatatatatatatagactatatatatatatatatatatatatattatatatatatatatatatatatataaacccatCACATCTTCAATCACAAAACAATAAGAAATATCTGCAGTATGAGCGTATCTGAATTCTGGGCACAGTCACTGGGTGGTATGTGGTTTATGACATTGGGCCAGTTGGACGAGCTGAATGATGACTTTCACTTTAAACTCATCAGTTCTGATTTTTTAGGTATTAACATCTTTAAACTCGGAACAGCGGAGTtagaattaagtaaaaaaaataaaacacaacaacagTTGTTCTGAATAACCCCCTCAGTCCAGACATCCAGCCGCTGCACACATGTAGCataaatgaatgtttttgtaataataataataataataataatcttttatCAGTTCTCTGTAATGTTCCTGTGTTAGTCACCAGTTCTCGAGTAACCTGCAGAACTCTTGCTATGAATGAAGTTCAGTAGAAttatgctgctgctgatgaatcaacTGGGCTCTTCTGAAATAAACACATTCCAGATGTTCTAAAAAggtgtttaacatgttttatcaCTATAGTCTCCTAGAGAAAGCCCAGTTTCTAGCCCAGCTAATAGACTGACTCTGTACGGGAGAATATGCAGGTATTATAATTTAAGAGTTTGGGAGCAATAATTGTTTCTCATGCCGTCGTATAGGAATTGTTTCACCTGAAAGTTATAAAACTGTAacagattttaaatgttaatatcCTTTATTACTCATCTCGTTTTACccttaaatgtttgtttgtttttttaaacagttctcACAACAGTACTTGAATAATGTATACAAAACTGCACTTCTCATCCCTTCATAACCGTGGAACCATCTCTGATATAACGATGTCAACCGataatattcattaaaaacaaaatacctTCTAGTGAATAAAGCTGGAATATCTCTCATGA
>XM_007248406.3
ATAAAGAGTGACATCAcgacccagagagagagagagagagacacaggagAACCCTCCTAACAGAACCCAGAACCAGCACCGCACGAGCAGCGCGAGCCCCACAACACCGCCCGGCCCACCGCACGAGCTCCTGCAGTACAGAGCGAGACGGACGCTGACATGGAGGAGCTACAGGACGTTCAGCTGACAGAAATCAGGCCCCTGCTGACCAACAAGaaTTCTCGGAACTTCCAGGACTTTGATTGTCAGGAATATGACCTTGAGACTCCGCAAGGTGTCCTACACGTGACCATGAGGGGCATTCCCAAAGGAAACCGCCCTGTGATCCTGACCTACCATGACATCGGCCTGAACCATAAATCGTGCTTCAACACACTGTTTAACTTTGAGGACATGAAGGAGATCACACAGCACTTTGCCGTGGTGCACATCGATGCCCCCGGCCAGCAGGAGGGAGCACCCCCCTTCCCCACTGGGTACCAGTATCCCAGTATGGATGAGCTGGCAGAGATGCTGCCCTCAGTCATGACTCAGCTGAAGGTGAACAGTGTGATCGGAATTGGCGTAGGTGCAGGAGCATACATCCTCTCCCGATTTGCACTCAACCACCCGTCGCTAGTGGAGGGTCTGGTGCTGATCAATGTGAACCCGTGCGCTGAGGGCTGGATCGACTGGGCTGCTTCTAAGCTCTCTGGATGGACCAGCACCCTGGTGGACATTGTGATGGCTCATCACTTCAGCACTGAGGAGCTAACAGACAACCAGGAACTGATCCAGACGTACCGCCTCCACATCGCCCAGGACATCAACCAGGAGAACCTTACCCTCTTCTGTGACTCTTACAATGCGCGCCGGGACCTGGGAATTGAGAGGCCTGTTGTTGGTCTGAATGAAGATATCAACAACACGCTGGTCTGCCCGGCTCTGCTGGTGGTGGGAGACACATCTCCTGCTGTGGAAGCTGTGGTGGAATGCAACTGCAGGCTAAATCCGACAAAAACGACACTCCTGAAGATGGCCGACTGTGGCGGCTTGCCTCAGGTTGTGCAGCCCGGTAAACTGGCCGAGGCCTTCAAGTATTTTGTTCAGGGGATGGGATACAtaccaGCTGCCGGCATGACCCGCCTCGCCCGCTCCcgcaccacctcctcctccagcatCGCCTCTATGGACAGCACCCGCCTGCGCAACCTCAACAGCCCAATGGACGGCCTCAACACCGCAGCCCTGGACAACCAGGCCCAGCCACAGACCATGGAGGTGTCCTGCTAGACCAGCCCCCTCCTCTCTCAGGGGGTACAGTCTGCTGTTCCTACATGCTAACTCCTCCCCTGAACCGATCGATCACCTGATCAGGTTTGCTAAAGCAAGCAGAGGCGGTAAAGATTAGtggtgcacacaaacacacacaaacacagagagagagagagagtatatgattatatatatatatagactatatatatatatatatatatatatattatatatatatatatatatatatataaacccatCACATCTTCAATCACAAAACAATAAGAAATATCTGCAGTATGAGCGTATCTGAATTCTGGGCACAGTCACTGGGTGGTATGTGGTTTATGACATTGGGCCAGTTGGACGAGCTGAATGATGACTTTCACTTTAAACTCATCAGTTCTGATTTTTTAGGTATTAACATCTTTAAACTCGGAACAGCGGAGTtagaattaagtaaaaaaaataaaacacaacaacagTTGTTCTGAATAACCCCCTCAGTCCAGACATCCAGCCGCTGCACACATGTAGCataaatgaatgtttttgtaataataataataataataataatcttttatCAGTTCTCTGTAATGTTCCTGTGTTAGTCACCAGTTCTCGAGTAACCTGCAGAACTCTTGCTATGAATGAAGTTCAGTAGAAttatgctgctgctgatgaatcaacTGGGCTCTTCTGAAATAAACACATTCCAGATGTTCTAAAAAggtgtttaacatgttttatcaCTATAGTCTCCTAGAGAAAGCCCAGTTTCTAGCCCAGCTAATAGACTGACTCTGTACGGGAGAATATGCAGGTATTATAATTTAAGAGTTTGGGAGCAATAATTGTTTCTCATGCCGTCGTATAGGAATTGTTTCACCTGAAAGTTATAAAACTGTAacagattttaaatgttaatatcCTTTATTACTCATCTCGTTTTACccttaaatgtttgtttgtttttttaaacagttctcACAACAGTACTTGAATAATGTATACAAAACTGCACTTCTCATCCCTTCATAACCGTGGAACCATCTCTGATATAACGATGTCAACCGataatattcattaaaaacaaaatacctTCTAGTGAATAAAGCTGGAATATCTCTCATGA

Function

symbol description
ndrg3 Predicted to be involved in signal transduction. Located in cytoplasm.

NR:

description
PREDICTED: protein NDRG3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248404.3 True 2436 mRNA 0.47 17 22739733 22782472
XM_007248405.3 False 2427 mRNA 0.46 15 22739733 22759556
XM_007248406.3 False 2395 mRNA 0.47 16 22739733 22782470

Neighbor

gene id symbol gene type direction distance location
LOC103040317 faim2 coding downstream 34244 22693076 ~ 22705489 (-)
LOC103024753 LOC108424569 coding downstream 100185 22460458 ~ 22639548 (-)
eef1akmt3 NA coding downstream 436643 22297852 ~ 22303090 (-)
LOC111195450 NA coding downstream 446195 22286609 ~ 22293538 (-)
LOC103037062 LOC108424641,LOC106583265,LOC103359365,LOC100304514 coding downstream 455076 22259659 ~ 22284657 (-)
LOC103042162 LOC108412995 coding upstream 23109 22805581 ~ 22840324 (-)
LOC103025695 sulf2a,LOC108412941,LOC107655065,LOC107749484,LOC107685697,LOC107600506 coding upstream 67669 22850141 ~ 22925668 (-)
timm17a timm17a,LOC107727855,LOC107554688,LOC106582745 coding upstream 157858 22940330 ~ 22945009 (-)
lmod1 NA coding upstream 169252 22951724 ~ 22959046 (-)
shisa4 shisa4,LOC107561500,LOC107727880,LOC107655068,LOC107749490,LOC107685700 coding upstream 181236 22963708 ~ 22972405 (-)
G192145 NA non-coding downstream 3491 22735091 ~ 22736242 (-)
G192149 NA non-coding downstream 51595 22684675 ~ 22688138 (-)
G192138 NA non-coding downstream 85886 22609381 ~ 22653847 (-)
G192137 NA non-coding downstream 207017 22532454 ~ 22532716 (-)
G192120 NA non-coding downstream 298277 22407246 ~ 22441456 (-)
G192235 NA non-coding upstream 156449 22938921 ~ 22939154 (-)
G192237 NA non-coding upstream 168535 22951007 ~ 22951326 (-)
G192232 NA non-coding upstream 178775 22961247 ~ 22962809 (-)
G192240 NA non-coding upstream 248180 23030652 ~ 23031070 (-)
LOC111195460 NA non-coding upstream 316366 23098838 ~ 23100988 (-)
amhr2 NA other downstream 16828 22709549 ~ 22722905 (-)
alas1 alas1,LOC106583798 other downstream 377275 22349347 ~ 22362458 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other downstream 888091 21846969 ~ 21851642 (-)
elmo2 elmo2,LOC106583331 other downstream 1194902 21510924 ~ 21544831 (-)
npff npffl,npff,LOC107738884,LOC107677943,LOC107669931 other downstream 1303280 21430016 ~ 21436453 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other upstream 3691 22786163 ~ 22803642 (-)
G192251 adipor1,LOC107749488,LOC107385668 other upstream 272161 23054633 ~ 23058805 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other upstream 1256774 24039246 ~ 24105898 (-)
G192815 mdm4 other upstream 2429203 25211675 ~ 25217550 (-)
LOC111195415 tfeb other upstream 3092438 25874910 ~ 25878653 (-)

Expression


Co-expression Network