lmod1


Basic Information

Item Value
gene id lmod1
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 22951724 ~ 22959046 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248413.3
CAGAGCCGTGAGGAGAGCCTCCGGGACAGCGCCTCTGATCGGACTCGGCTGCTCCTCTTAAATGTATCACCGTGGCTGTATGGGACTAGACCTGGGCTAAGACGGATCTGTGGTCGTAAACctatatacagtttatatacacACGGTATATAAACAGATTTATTGATTGTGGGTTGGTGAGTATTGGTGAGAGTTTTTTAGTCATGTCCAGAAGAAAGGTGAGGGGGTTGACCCGGACCGGGCGCCAGGTCAGCGAGGACCCGGACCTTGACAACCTGCTGTCAAACCTGTCGCCCGAAGAgatggaggagctgcagaaggAGGTGTCCACGGTGCCTGACCCCGACCCCAGCGAAATGATCGTTGTGGACCATGGAGATCAGAAGCAGAGTGGACCTAACAAGAAGGAGTCCAGCTCCAACAACCGGGACGAGCAGCTTGAGTCCAAGATGCACCTGCAGAGGAACCAGTCCACCGAGGGTGAGACTCGAAGGGAAAGTCGGAAGCAAGAGTATCTGAGAAAAATGGGTCTAAGCCAGGAGAAGAATGCTCCCCCATCAGACTCCAGGGATGGAGGGCTTCAGAGGCAAACCAGCATCTCCACACCCAGTTCTTTCCCAGCTAAGCAAGATAAGAAAATGGAGGACAGGAACTCAAGAACCGTAGAAGAACCCAGAAGCATCCGAGCAGGACAATTCAAACGAGAGGAAGAAAGTGCGAAGAAAGGTGACATGAAAGAGAAAGTGCAAAACGATGACAGCAAACTCAGAGAACGACGAGAGACAAGAGAAAGTAGCAGCAGCAAGACAAAAGAGCTGATCTCCAAACTTCAGGAGAAAAAGGAAGAGCCCAAAGAGAAGGACAGAAGAGATGACAGTCGGAAGAGGGAGTCGACAGACAGCAAGACGCGGGAGATGATCTCCAGGATACGAGAGAAGCAAGATCAGGAGGAAAAGAAGGAACGTGAGAGACGAGAGGAAGCCAAGAAAAGAGAGGAGGTCAGGATGAAGGGACTTATCTCGAAGatggaggagaaaaagaatcAGGTTGAAGAGAGCAAGACGAACGGAGAAGAACGACAAAGGAAGACAGaggacaaagagaaagaggagaaggtAGAAAAACAACTGGAAGTAGAGAAGTCCAAAGAGATGGTGAAAAGTGGAGTGAAGAAGGAGCCTAAAATTACAGACAGagaagacaaagagaaagagaaagagaaggaacaGAAGGATAAAGATCTACCTAAAGGTAAAGAGGAGCTAAAGACAAAGTTTGCCGAAAAGAAAAGCTCTGCCGACAAAGAGCAAACTGTGATTCACAACGACATCCACGAGTCTGGCAAAGAGAAAACGATTGAAAACTGTCAGTCGGAAAAGAACACCAAAACAAAGAgcaaagaggaggaggaggaagaggagtccACCAGTATGTTTGCTGAAGATCTGGAACGAGTCCGCCGCAACGATCCCACCATGGCTGAAGTCAATGTCAACAACTCTGAGGTCATCAAAGTCAAAACCCTCATTCAGTTTGCTGAAGCCCTGAATAACAACACTCACATCAAGAGTTTTGCCCTCGCCAACTGCCGAGCAGACGACCACGTAGCTTATGCCATCGCTGGCACCTTACGCAACAACAAGACCCTCACCAGCGTCAACCTGGATTCAAACCTTCTCACCAGCAAAGGGATCATGGCACTGGTCCAGGCCCTTCAGTACAATTCCACCCTCACCGAACTCCGCTTTCACAACCAGCGACACATCTGCGGAGGCAAGTCGGAGATGGAGATGACAAAGATATTAAAGGAAAACACGACCCTCCTAAAGCTGGGATACCACTTTGAGCTGGCCGGACCACGCATGACCATGACCAACATCCTCAGTCGCAACATGGACCGGCAGCGGCAGAGACGACTGCAGGAGCAGAAGCAAGCCCAGGCCCAGGGCAACGGCGACAAGAAGGACTCACTCGAAGTCCCGAAGATCGGCTTCAGCAAAACCTCTCCGAGGAGTTCACCAAAACCCTCTCCCACCCCCTCTCCTGTTCCGTCTCCCAAGTTGATCCCCAAGAAGGGACATGGTGGTCCTccacccccacctccaccacctgGAGGCTTGCCACCACCACCGCCGCCAATTCTGGACGGTGACTTTCTGAAGAACTCCCTGACCCCTGTGTCTCAGAGAAAGGTCGAGGACAGAACTGGAGGCCGAAGCGGAAGCCTAAACTCACGAGACCAACTTCTGGCCTCCATAAGAGGTGCCAAccctaaaaagctaaaaaagGTTGAACTACCGAAGCTCCTGCAGTAATCAGACCGAGATAGTGGAGTGAAGATGGACGAGAGAACGAGGCCGGACCTCTCATGGACCCGGAACTGGTCAGAACCAGGCATAAGTAACCAGTCTACTACTGCCCTGTATGATGGACCACAGGCGAGGGGTGGATATTGGTCGGTTTATGGGATGGATTCTCAGCTTCAGCCAGGATCTCTCGCAGTACCCCGGACTCTGTAGAGAACCGGAACCTGGTGAAGCTGTGGGGCGACACAGAGGCTGAGGGTGCCAGCCTGAGGGGATGCcttgcttatttttttgcactaaatgAAGCAATTCTTTTGAGAGTGTGCagtacagtgtgtttgtgtgtgtgaatggagaAATGGTGCATTTTAGAGCAGATTTAACTCAGCTTCCAGTGACTGACTGCTTAAACTCAATGGGAATATTTTCTGTTTGGAATTTTAATTATGCTACCATAATTCATCAGATGTAAGAAGATTCATTTGGAACGGTTTGTTGGCAAATTTGCAGTCTGAGGTTTTTTTAGAATGGTGAAGATGGGAAGTAGaagcctgtttacacctggttacTTAATTTAGTTTTGAGAATCAGGATTAGGCCAAACCGCATTAAAAATACTAGTGTAAACACATCCAATACGCatcttctttgtttgtttttttgtttttttaataatcaggGAATTTACTTCTTAAACCCTAGATTTCAGATTCTGTTATAAATTCTAATGAAGAAACAATAATGAAGTATTTGTACAGTATA

Function

GO: NA

KEGG:

id description
K22030 LMOD; leiomodin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248413.3 True 3068 mRNA 0.49 3 22951724 22959046

Neighbor

gene id symbol gene type direction distance location
timm17a timm17a,LOC107727855,LOC107554688,LOC106582745 coding downstream 6715 22940330 ~ 22945009 (-)
LOC103025695 sulf2a,LOC108412941,LOC107655065,LOC107749484,LOC107685697,LOC107600506 coding downstream 26056 22850141 ~ 22925668 (-)
LOC103042162 LOC108412995 coding downstream 111400 22805581 ~ 22840324 (-)
LOC103040941 ndrg3,LOC108412994,LOC107655061,LOC107727846,LOC107749481,LOC107562126 coding downstream 169252 22739733 ~ 22782472 (-)
LOC103040317 faim2 coding downstream 246235 22693076 ~ 22705489 (-)
shisa4 shisa4,LOC107561500,LOC107727880,LOC107655068,LOC107749490,LOC107685700 coding upstream 4662 22963708 ~ 22972405 (-)
ipo9 ipo9,LOC106566056 coding upstream 15158 22974204 ~ 22993650 (-)
LOC103025998 kdm5b,LOC107600688,LOC107685701,LOC107561016,LOC107749493 coding upstream 37048 22996094 ~ 23028601 (-)
rabif rabif,LOC107601129,LOC107581890,LOC107749491 coding upstream 74429 23033475 ~ 23036792 (-)
LOC103044418 adipor1 coding upstream 104121 23063167 ~ 23072202 (-)
G192237 NA non-coding downstream 398 22951007 ~ 22951326 (-)
G192235 NA non-coding downstream 12570 22938921 ~ 22939154 (-)
G192145 NA non-coding downstream 215482 22735091 ~ 22736242 (-)
G192149 NA non-coding downstream 263586 22684675 ~ 22688138 (-)
G192138 NA non-coding downstream 297877 22609381 ~ 22653847 (-)
G192232 NA non-coding upstream 2201 22961247 ~ 22962809 (-)
G192240 NA non-coding upstream 71606 23030652 ~ 23031070 (-)
LOC111195460 NA non-coding upstream 139792 23098838 ~ 23100988 (-)
G192288 NA non-coding upstream 146062 23105108 ~ 23105627 (-)
G192293 NA non-coding upstream 195536 23154582 ~ 23155042 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other downstream 148082 22786163 ~ 22803642 (-)
amhr2 NA other downstream 228819 22709549 ~ 22722905 (-)
alas1 alas1,LOC106583798 other downstream 589266 22349347 ~ 22362458 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other downstream 1100082 21846969 ~ 21851642 (-)
elmo2 elmo2,LOC106583331 other downstream 1406893 21510924 ~ 21544831 (-)
G192251 adipor1,LOC107749488,LOC107385668 other upstream 95587 23054633 ~ 23058805 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other upstream 1080200 24039246 ~ 24105898 (-)
G192815 mdm4 other upstream 2252629 25211675 ~ 25217550 (-)
LOC111195415 tfeb other upstream 2915864 25874910 ~ 25878653 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other upstream 3752207 26711253 ~ 26724106 (-)

Expression


Co-expression Network