shisa4 (shisa4,LOC107561500,LOC107727880,LOC107655068,LOC107749490,LOC107685700)


Basic Information

Item Value
gene id shisa4
gene name shisa4,LOC107561500,LOC107727880,LOC107655068,LOC107749490,LOC107685700
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 22963708 ~ 22972405 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248414.3
TCAGTACATCACTGTTTGCCCGCAGGCTGTGTTGCTCGCGCGGCGGCGGCGGGATCTCGCGTGCGCATTGGAACCGGAGCGGATATTTTGGATACAGCGGCGCCGCGCTCTCTCTCCGTACAGATGTAAGGTGCTGTTCTGTTCCCGCCTCTTCTCTCTACTCTCTGCGGCTCCGGTTCAGGTCCCGGTTCGGTCGGTGGTGCGGAGCGGAGATGGCGCTGGCCGCGCTGGCTGTAGTGGCGCTGTGGGCGCTGCTGTCGGTGTGTGACGTGAGTGCTAATGAGGACTGCTTGTGGTATGTGGATAAAAATGGCACCTGGCACAATGGCTTTGACTGCCAACTCATCTCCTTCTGCTGTGGGACCTGCGCCCGGCGCTACTGCTGCCTTAACCCCGCAAAGATGATCACAGAGTCAGTACAGAAGCGCTGCATGCTCCTCCGCCTCAGCCCGTCCACCATTGCTGGAATCGCTTCCTCTATCCTGCTTTTTGTGGCGGCCATTGCCACCATGGTCTGCTGCTTCATGTGCTCCTGCTGCTACCTGTACCAGCGCCACCAGCAGCGGGGCCGATCAACTTACGAAGCTCAGCACATTCCGATGGCCAGCTACCCTGTGGAACCCATGTATGACGTTTATGGAAAACCCATCCGAAACCCGGAGAACCCTGGATATCCGATGGCTCCACAGTACCCTGGTGTGCCCCCGCAGTACCCCATGATGGCACCGGGGCCATACCCTCCATATACTCCTGCTGACCCGGGTTTCAATTTTGGAGCTCCTCCACCATATTCCCCCCCGCAGTATCCGGGCCACTGAGGGGTCGGCCTGTAACGGATCAGAGCTCAGACTGGCATGAGAGACTCTCCTCGAGTCATTAAACTGACCCGACAGATCGTCTTCAgaatctctttatttatttcctatttatttctgtttttttctctggagTGCAGCATGAACGGGCCGGGTCCGCCTGATGGAGTGAGTCCAGGAGTGAGTACCGGGGtgaacacacactcatctcACGAGTCGCTGAGACATTTTACACTCTCCCTGAAGCACAATGACTCCCCCTCCCCTTCCCACTCCACGTCACAGAGCTGACCTTAGTCCGTCCAGAATTTTACTGCTACCGTCCTCCTGCGTCATCATACACGCCCGCTAAACCTCCTTCAGAGGCTCTGGTGTTGGTACCCGTGGGGTGACGGACTGGTTGCTTCTGTTTCTGCTGCCACAGGATCCATTTCACTTGTCTGTTTAAAACTCATAATCCATAGATCATAAAGCATGTTATCTGCAACAGTACAGACTGGAATGTTCtacatataataaaaagtacatataataaaacacactaCCCGTCttattagagtaaaaaaaaacaacaaacactaGGCAACGTTAGATTTGTCTGTTTTTGACCACAAAGGTAAATTAGAGT

Function

symbol description
shisa4 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SHISA4 (shisa family member 4).

NR:

description
PREDICTED: protein shisa-4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248414.3 True 1443 mRNA 0.53 5 22963708 22972405

Neighbor

gene id symbol gene type direction distance location
lmod1 NA coding downstream 4662 22951724 ~ 22959046 (-)
timm17a timm17a,LOC107727855,LOC107554688,LOC106582745 coding downstream 18699 22940330 ~ 22945009 (-)
LOC103025695 sulf2a,LOC108412941,LOC107655065,LOC107749484,LOC107685697,LOC107600506 coding downstream 38040 22850141 ~ 22925668 (-)
LOC103042162 LOC108412995 coding downstream 123384 22805581 ~ 22840324 (-)
LOC103040941 ndrg3,LOC108412994,LOC107655061,LOC107727846,LOC107749481,LOC107562126 coding downstream 181236 22739733 ~ 22782472 (-)
ipo9 ipo9,LOC106566056 coding upstream 1799 22974204 ~ 22993650 (-)
LOC103025998 kdm5b,LOC107600688,LOC107685701,LOC107561016,LOC107749493 coding upstream 23689 22996094 ~ 23028601 (-)
rabif rabif,LOC107601129,LOC107581890,LOC107749491 coding upstream 61070 23033475 ~ 23036792 (-)
LOC103044418 adipor1 coding upstream 90762 23063167 ~ 23072202 (-)
LOC103045443 LOC108410710,LOC107727873,LOC107560790,LOC107685706,LOC107749489 coding upstream 101714 23074119 ~ 23082128 (-)
G192232 NA non-coding downstream 899 22961247 ~ 22962809 (-)
G192237 NA non-coding downstream 12382 22951007 ~ 22951326 (-)
G192235 NA non-coding downstream 24554 22938921 ~ 22939154 (-)
G192145 NA non-coding downstream 227466 22735091 ~ 22736242 (-)
G192149 NA non-coding downstream 275570 22684675 ~ 22688138 (-)
G192240 NA non-coding upstream 58247 23030652 ~ 23031070 (-)
LOC111195460 NA non-coding upstream 126433 23098838 ~ 23100988 (-)
G192288 NA non-coding upstream 132703 23105108 ~ 23105627 (-)
G192293 NA non-coding upstream 182177 23154582 ~ 23155042 (-)
G192335 NA non-coding upstream 243185 23215590 ~ 23223369 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other downstream 160066 22786163 ~ 22803642 (-)
amhr2 NA other downstream 240803 22709549 ~ 22722905 (-)
alas1 alas1,LOC106583798 other downstream 601250 22349347 ~ 22362458 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other downstream 1112066 21846969 ~ 21851642 (-)
elmo2 elmo2,LOC106583331 other downstream 1418877 21510924 ~ 21544831 (-)
G192251 adipor1,LOC107749488,LOC107385668 other upstream 82228 23054633 ~ 23058805 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other upstream 1066841 24039246 ~ 24105898 (-)
G192815 mdm4 other upstream 2239270 25211675 ~ 25217550 (-)
LOC111195415 tfeb other upstream 2902505 25874910 ~ 25878653 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other upstream 3738848 26711253 ~ 26724106 (-)

Expression


Co-expression Network